Wall clock time and date at job start Mon Mar 30 2020 01:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47373 * 2 1 4 4 C 1.53002 * 109.46921 * 239.99635 * 2 1 3 5 5 N 1.46504 * 109.47061 * 184.99845 * 4 2 1 6 6 C 1.36939 * 119.99823 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99769 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00042 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47217 * 89.99712 * 10 8 6 12 12 H 1.48492 * 109.47489 * 209.99962 * 10 8 6 13 13 H 1.48503 * 109.47244 * 330.00251 * 10 8 6 14 14 N 1.46508 * 109.47322 * 120.00234 * 2 1 3 15 15 C 1.46497 * 119.99705 * 59.99336 * 14 2 1 16 16 C 1.34777 * 119.99978 * 240.00038 * 14 2 1 17 17 O 1.21607 * 120.00053 * 3.03335 * 16 14 2 18 18 C 1.47439 * 119.99849 * 183.03524 * 16 14 2 19 19 C 1.37990 * 124.15638 * 173.36805 * 18 16 14 20 20 S 1.72096 * 104.03359 * 179.97438 * 19 18 16 21 21 N 1.56397 * 96.15806 * 359.97438 * 20 19 18 22 22 N 1.27423 * 109.87475 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46668 * 300.00091 * 1 2 3 24 24 H 1.09003 * 109.47097 * 59.99469 * 1 2 3 25 25 H 1.08993 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47586 * 305.00297 * 4 2 1 27 27 H 1.09000 * 109.46927 * 65.00790 * 4 2 1 28 28 H 0.96997 * 119.99739 * 0.02562 * 5 4 2 29 29 H 0.96997 * 119.99784 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.47291 * 264.08859 * 15 14 2 31 31 H 1.08994 * 109.47587 * 24.08935 * 15 14 2 32 32 H 1.08999 * 109.46886 * 144.09324 * 15 14 2 33 33 H 1.08001 * 127.98100 * 359.94006 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4390 -2.2067 7 1 3.6466 -1.8442 -3.0516 8 6 5.5671 -1.5391 -2.1509 9 7 6.2216 -1.0456 -1.1211 10 14 6.4998 -2.3740 -3.5374 11 1 6.8625 -1.3670 -4.5668 12 1 7.7349 -2.9974 -2.9980 13 1 5.6434 -3.4213 -4.1497 14 7 2.0184 -0.6907 1.1962 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0834 17 8 3.0416 1.1434 1.9197 18 6 3.3398 -0.7488 3.2523 19 6 4.2444 -0.2026 4.1397 20 16 4.5228 -1.4615 5.2797 21 7 3.5616 -2.5027 4.6179 22 7 3.0213 -1.9957 3.5812 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -1.7198 -1.2952 27 1 1.7516 -0.1584 -2.1369 28 1 3.9823 -0.4628 -0.4316 29 1 7.1882 -1.1159 -1.0819 30 1 0.7975 -2.1451 2.0868 31 1 1.4270 -2.5700 0.4771 32 1 2.5051 -2.6081 1.8928 33 1 4.6780 0.7864 4.1225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482313404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:31 Heat of formation + Delta-G solvation = 42.213441 kcal Electronic energy + Delta-G solvation = -18941.852998 eV Core-core repulsion = 15937.621874 eV Total energy + Delta-G solvation = -3004.231124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24128 -40.57254 -37.95618 -35.87812 -33.85142 -32.90144 -31.73971 -28.23559 -27.80830 -27.41204 -25.24717 -24.34060 -22.09293 -21.06715 -19.76065 -19.12410 -17.72227 -17.39416 -17.21727 -16.79267 -16.30229 -16.07151 -15.37818 -15.16581 -15.03273 -14.14951 -14.02510 -13.83575 -13.69303 -13.27594 -13.17803 -12.97848 -12.88021 -12.79886 -12.52085 -12.16288 -11.83630 -11.75924 -11.27432 -11.11755 -11.09710 -10.96198 -10.79653 -9.65743 -9.01240 -7.95228 -5.24770 -0.91885 -0.03203 0.36655 0.56651 1.44402 1.46858 1.54961 1.86082 2.10963 2.54176 2.75391 3.37995 3.59356 3.69638 3.88456 4.08380 4.27584 4.32834 4.34371 4.45143 4.74972 4.83418 4.87734 4.94898 5.06063 5.18149 5.30639 5.46749 5.58714 6.22236 6.25298 6.47510 6.97142 7.31224 8.06926 8.30288 9.28207 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.006655 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.516097 B = 4206.581656 C = 5280.335283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.742 5.742 6 C -0.242 4.242 7 H 0.080 0.920 8 C -0.078 4.078 9 N -0.970 5.970 10 Si 0.976 3.024 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.267 1.267 14 N -0.577 5.577 15 C 0.082 3.918 16 C 0.593 3.407 17 O -0.566 6.566 18 C -0.042 4.042 19 C -0.245 4.245 20 S 0.567 5.433 21 N -0.335 5.335 22 N -0.221 5.221 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.370 0.630 29 H 0.249 0.751 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -0.465 13.509 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.385 5.385 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.621 5.621 10 Si 0.804 3.196 11 H -0.215 1.215 12 H -0.224 1.224 13 H -0.192 1.192 14 N -0.307 5.307 15 C -0.061 4.061 16 C 0.377 3.623 17 O -0.446 6.446 18 C -0.189 4.189 19 C -0.402 4.402 20 S 0.702 5.298 21 N -0.315 5.315 22 N -0.090 5.090 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.202 0.798 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.632 -1.616 14.222 16.715 hybrid contribution 0.909 1.019 -1.630 2.127 sum -7.723 -0.597 12.592 14.783 Atomic orbital electron populations 1.21972 0.90896 1.03703 1.03424 1.21460 0.96429 0.96584 0.83039 0.90456 1.21247 0.84114 0.97988 0.95327 1.42511 1.01996 1.69865 1.24117 1.19667 0.89963 1.28265 0.99509 0.90242 1.25608 0.97563 1.03212 1.00653 1.69867 1.06845 1.52993 1.32404 0.85108 0.77850 0.78139 0.78464 1.21465 1.22402 1.19151 1.47668 1.48173 1.13593 1.21261 1.22170 1.02234 0.79683 1.02007 1.17073 0.78271 0.85493 0.81440 1.90766 1.61125 1.16223 1.76436 1.22552 1.03129 0.92169 1.01046 1.29224 1.01092 1.10319 0.99524 1.80866 1.32349 0.93739 1.22800 1.78320 1.15235 1.28328 1.09647 1.71891 1.21015 1.08656 1.07445 0.91788 0.89450 0.90689 0.94577 0.94361 0.79848 0.94249 0.90567 0.90777 0.90026 0.76207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.19 71.98 0.66 -2.78 16 2 C 0.13 4.47 2.79 44.99 0.13 4.59 16 3 H 0.08 3.09 6.90 -2.39 -0.02 3.07 16 4 C 0.14 5.67 5.52 86.38 0.48 6.15 16 5 N -0.74 -39.40 5.43 -343.44 -1.87 -41.26 16 6 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 7 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 8 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 9 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 10 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 N -0.58 -20.82 2.24 -826.45 -1.85 -22.68 16 15 C 0.08 2.57 8.54 127.77 1.09 3.67 16 16 C 0.59 23.33 7.36 86.67 0.64 23.97 16 17 O -0.57 -25.19 16.14 -4.05 -0.07 -25.26 16 18 C -0.04 -1.41 6.63 41.36 0.27 -1.13 16 19 C -0.24 -6.30 11.22 67.76 0.76 -5.54 16 20 S 0.57 10.71 23.38 -56.49 -1.32 9.39 16 21 N -0.33 -9.20 12.49 37.02 0.46 -8.73 16 22 N -0.22 -7.07 7.93 -50.35 -0.40 -7.47 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 1.61 7.67 -2.39 -0.02 1.59 16 26 H 0.04 1.39 6.87 -2.39 -0.02 1.37 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.37 21.68 7.06 -92.71 -0.65 21.02 16 29 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.27 6.54 -2.39 -0.02 2.26 16 32 H 0.08 2.89 5.29 -2.39 -0.01 2.88 16 33 H 0.22 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -75.13 295.39 3.09 -72.03 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.49 Total: 24.32 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.33 Total: 11.71 kcal Atomic # 7 Polarization: -138.11 SS G_CDS: -3.38 Total: -141.48 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.07 Total: -25.26 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 16 Polarization: 10.71 SS G_CDS: -1.32 Total: 9.39 kcal Total: -75.13 3.09 -72.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482313404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.246 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds