Wall clock time and date at job start Mon Mar 30 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47335 * 2 1 4 4 C 1.46495 * 120.00113 * 263.37874 * 3 2 1 5 5 C 1.53007 * 109.47289 * 270.00304 * 4 3 2 6 6 N 1.46495 * 109.47289 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00035 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99838 * 359.97438 * 7 6 5 9 9 C 1.38808 * 119.99997 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00181 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00021 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46835 * 59.99888 * 11 9 7 13 13 H 1.48505 * 109.46882 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46929 * 299.99695 * 11 9 7 15 15 C 1.34773 * 120.00049 * 83.38037 * 3 2 1 16 16 O 1.21604 * 120.00084 * 183.66317 * 15 3 2 17 17 C 1.47451 * 120.00175 * 3.65902 * 15 3 2 18 18 C 1.37976 * 124.15594 * 173.59863 * 17 15 3 19 19 S 1.72108 * 104.03423 * 180.02562 * 18 17 15 20 20 N 1.56408 * 96.15192 * 0.02562 * 19 18 17 21 21 N 1.27418 * 109.87614 * 359.97438 * 20 19 18 22 22 H 1.09010 * 109.46970 * 300.00227 * 1 2 3 23 23 H 1.09000 * 109.46737 * 59.99820 * 1 2 3 24 24 H 1.08996 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47299 * 239.99843 * 2 1 3 26 26 H 1.09008 * 109.47299 * 119.99895 * 2 1 3 27 27 H 1.09004 * 109.46958 * 29.99435 * 4 3 2 28 28 H 1.08997 * 109.47718 * 149.99657 * 4 3 2 29 29 H 1.09004 * 109.46411 * 299.99467 * 5 4 3 30 30 H 1.08997 * 109.47268 * 59.99078 * 5 4 3 31 31 H 0.97005 * 119.99768 * 359.97438 * 6 5 4 32 32 H 0.97000 * 120.00407 * 180.02562 * 10 9 7 33 33 H 1.08007 * 127.98642 * 0.26794 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4005 2.0230 -1.2602 5 6 3.8845 1.7688 -1.5327 6 7 4.2664 2.4101 -2.7932 7 6 5.5557 2.3177 -3.2453 8 1 6.2911 1.7723 -2.6723 9 6 5.9177 2.9258 -4.4394 10 7 5.0217 3.5908 -5.1374 11 14 7.6767 2.8003 -5.0558 12 1 8.0292 1.3721 -5.2591 13 1 7.8031 3.5291 -6.3435 14 1 8.5957 3.3994 -4.0550 15 6 2.1162 2.0614 1.1594 16 8 2.4578 3.2284 1.1527 17 6 1.8088 1.3905 2.4360 18 6 2.0008 1.9618 3.6772 19 16 1.4814 0.7472 4.7804 20 7 1.0911 -0.3093 3.6951 21 7 1.3141 0.1616 2.5323 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8055 1.6085 -2.0741 28 1 2.2226 3.0961 -1.1901 29 1 4.4794 2.1833 -0.7188 30 1 4.0624 0.6957 -1.6028 31 1 3.6060 2.9002 -3.3076 32 1 5.2746 4.0155 -5.9720 33 1 2.3843 2.9457 3.9040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482941684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:40 Heat of formation + Delta-G solvation = 66.178020 kcal Electronic energy + Delta-G solvation = -18260.316713 eV Core-core repulsion = 15257.124772 eV Total energy + Delta-G solvation = -3003.191942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.41938 -39.36492 -36.30077 -34.57722 -32.45318 -31.62163 -30.24697 -28.12703 -27.04498 -24.47797 -23.55756 -22.57365 -21.39002 -20.47126 -18.50834 -17.15322 -16.74634 -16.35372 -16.09621 -15.56324 -14.96044 -14.40219 -13.99664 -13.96478 -13.58601 -13.23921 -12.94642 -12.72526 -12.50668 -12.32089 -11.81781 -11.28957 -11.24355 -10.96805 -10.89087 -10.65731 -10.34702 -10.29889 -10.16663 -10.12828 -9.97396 -9.70665 -8.85142 -8.55423 -6.91738 -5.74064 -3.03494 -0.20242 0.64911 1.25725 1.27423 2.94439 3.08530 3.46767 3.50559 3.52058 3.61408 4.42439 4.54772 4.63598 5.00345 5.12626 5.33726 5.49643 5.55751 5.66698 5.76092 5.84001 5.99103 6.05132 6.17526 6.28297 6.55215 6.73716 6.89075 7.21161 7.42428 7.71743 8.07740 8.44312 9.55249 10.10993 10.46368 11.48776 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.003781 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.771008 B = 7402.703695 C = 7710.956730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.585 5.585 4 C 0.107 3.893 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.596 3.404 16 O -0.520 6.520 17 C -0.016 4.016 18 C -0.235 4.235 19 S 0.451 5.549 20 N -0.297 5.297 21 N -0.202 5.202 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -7.208 20.428 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.028 4.028 3 N -0.317 5.317 4 C -0.015 4.015 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.378 3.622 16 O -0.395 6.395 17 C -0.163 4.163 18 C -0.392 4.392 19 S 0.587 5.413 20 N -0.277 5.277 21 N -0.073 5.073 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -11.175 -8.222 21.204 25.340 hybrid contribution 1.260 1.250 -1.511 2.331 sum -9.915 -6.971 19.693 23.124 Atomic orbital electron populations 1.22041 0.95672 1.02117 1.01522 1.22033 0.94799 0.81597 1.04405 1.47802 1.62722 1.14695 1.06444 1.21825 0.97291 0.99296 0.83124 1.20915 0.91513 0.96031 0.90136 1.42191 1.10013 1.63676 1.21588 1.19162 0.86888 1.27825 1.03177 0.91245 1.24741 0.97888 1.00534 0.97715 1.69650 1.32932 1.39344 1.16282 0.86239 0.84417 0.77439 0.77917 1.21252 1.21629 1.21237 1.16742 0.78399 0.85495 0.81545 1.90870 1.47502 1.15139 1.86006 1.22819 1.04985 0.91665 0.96794 1.28894 1.05678 1.08721 0.95919 1.81490 1.42056 0.98829 1.18915 1.78724 1.23013 1.26059 0.99873 1.71899 1.12364 1.10075 1.12914 0.92916 0.92792 0.91519 0.89981 0.87865 0.89924 0.89369 0.95989 0.96210 0.78204 0.93420 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.68 37.16 0.36 -1.37 16 2 C 0.09 1.19 5.70 -4.04 -0.02 1.17 16 3 N -0.59 -8.97 2.49 -174.94 -0.44 -9.40 16 4 C 0.11 1.88 5.52 -4.04 -0.02 1.86 16 5 C 0.14 3.06 6.58 -4.04 -0.03 3.04 16 6 N -0.73 -19.23 5.60 -59.91 -0.34 -19.57 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 10 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 11 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 15 C 0.60 9.47 7.61 -12.51 -0.10 9.38 16 16 O -0.52 -9.86 16.36 5.27 0.09 -9.77 16 17 C -0.02 -0.20 6.48 -83.78 -0.54 -0.75 16 18 C -0.24 -2.18 11.21 30.64 0.34 -1.84 16 19 S 0.45 3.13 23.38 -107.50 -2.51 0.61 16 20 N -0.30 -3.12 12.49 60.35 0.75 -2.37 16 21 N -0.20 -2.43 6.55 32.74 0.21 -2.22 16 22 H 0.05 0.62 6.95 -51.92 -0.36 0.26 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 26 H 0.10 1.30 5.29 -51.92 -0.27 1.02 16 27 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.09 1.68 7.37 -51.93 -0.38 1.30 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.21 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -33.90 299.23 -6.10 -40.00 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.83 Total: 4.45 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.25 Total: 3.93 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.92 Total: -61.53 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.51 Total: 0.61 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.90 -6.10 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482941684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.174 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds