Wall clock time and date at job start Mon Mar 30 2020 01:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46745 * 2 1 4 4 C 1.52997 * 109.47072 * 120.00624 * 2 1 3 5 5 C 1.53004 * 109.47000 * 184.99738 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21563 * 120.00283 * 359.72077 * 7 6 5 9 9 C 1.47752 * 119.99635 * 179.72380 * 7 6 5 10 10 C 1.39351 * 124.11438 * 179.72402 * 9 7 6 11 11 N 1.30089 * 112.14363 * 179.85098 * 10 9 7 12 12 S 1.55925 * 108.75630 * 0.39574 * 11 10 9 13 13 N 1.31495 * 124.11823 * 0.02562 * 9 7 6 14 14 N 1.46496 * 109.46451 * 240.00353 * 2 1 3 15 15 C 1.36939 * 120.00442 * 85.00577 * 14 2 1 16 16 H 1.08006 * 119.99454 * 359.97438 * 15 14 2 17 17 C 1.38807 * 120.00698 * 179.97438 * 15 14 2 18 18 N 1.31625 * 119.99442 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00501 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47035 * 59.99782 * 19 17 15 21 21 H 1.48501 * 109.47385 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47244 * 300.00342 * 19 17 15 23 23 H 1.09005 * 109.47019 * 299.99619 * 1 2 3 24 24 H 1.08996 * 109.47178 * 59.99299 * 1 2 3 25 25 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47672 * 65.00068 * 4 2 1 27 27 H 1.09006 * 109.46819 * 304.99498 * 4 2 1 28 28 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 29 29 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 30 30 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 31 31 H 1.08003 * 123.92855 * 0.02562 * 10 9 7 32 32 H 0.97008 * 120.00047 * 264.99289 * 14 2 1 33 33 H 0.97003 * 119.99361 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 7 4.0532 -1.3037 2.5099 7 6 5.3736 -1.3345 2.7783 8 8 6.1598 -0.7941 2.0249 9 6 5.8656 -2.0254 3.9881 10 6 7.2096 -2.1147 4.3451 11 7 7.3796 -2.7717 5.4550 12 16 5.9871 -3.2349 5.9817 13 7 5.0890 -2.6357 4.8561 14 7 2.0182 -0.6905 -1.1962 15 6 2.1490 -0.0074 -2.3758 16 1 1.8919 1.0405 -2.4243 17 6 2.6121 -0.6615 -3.5091 18 7 2.9259 -1.9384 -3.4499 19 14 2.7899 0.2702 -5.1183 20 1 3.7444 1.3933 -4.9372 21 1 3.2999 -0.6478 -6.1682 22 1 1.4672 0.8063 -5.5288 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.7517 -1.7716 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.8532 0.4369 1.3572 29 1 3.9994 -1.0729 0.4258 30 1 3.4258 -1.7346 3.1113 31 1 8.0162 -1.6858 3.7689 32 1 2.2490 -1.6318 -1.1527 33 1 3.2491 -2.3956 -4.2420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484989992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:46 Heat of formation + Delta-G solvation = 2.481250 kcal Electronic energy + Delta-G solvation = -17772.799259 eV Core-core repulsion = 14766.845218 eV Total energy + Delta-G solvation = -3005.954041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.17092 -40.19437 -38.12351 -35.97399 -34.71135 -34.02182 -31.12091 -29.81605 -28.31971 -25.88784 -24.83441 -23.23093 -21.83058 -21.10015 -20.36738 -19.31014 -18.75746 -17.26957 -17.02707 -16.77386 -16.32975 -16.16868 -15.53921 -15.32580 -15.13640 -14.46803 -14.11819 -13.57677 -13.29690 -13.23405 -12.77475 -12.62135 -12.54074 -12.33651 -12.26578 -12.23392 -12.11724 -12.10951 -11.66116 -11.58357 -11.20654 -10.90640 -10.35307 -10.06464 -8.95776 -7.90199 -5.17054 -0.67436 0.32623 0.43381 0.63574 1.48176 1.51001 1.56449 1.97057 2.02311 2.59460 3.38738 3.44061 3.68378 3.92424 3.99338 4.00837 4.23489 4.37634 4.46837 4.68337 4.76999 4.88610 5.02611 5.10405 5.20561 5.27673 5.38811 5.41335 5.56435 5.63109 6.32614 6.39440 7.01306 7.38784 8.16551 8.37910 9.33168 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.003617 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.849275 B = 7739.971957 C = 8358.275400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.117 4.117 5 C 0.131 3.869 6 N -0.694 5.694 7 C 0.596 3.404 8 O -0.561 6.561 9 C -0.004 4.004 10 C 0.087 3.913 11 N -0.599 5.599 12 S 0.808 5.192 13 N -0.562 5.562 14 N -0.736 5.736 15 C -0.234 4.234 16 H 0.075 0.925 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.966 3.034 20 H -0.281 1.281 21 H -0.298 1.298 22 H -0.278 1.278 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.418 0.582 31 H 0.220 0.780 32 H 0.372 0.628 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -1.847 23.085 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.155 4.155 5 C 0.008 3.992 6 N -0.345 5.345 7 C 0.377 3.623 8 O -0.439 6.439 9 C -0.176 4.176 10 C -0.105 4.105 11 N -0.442 5.442 12 S 0.849 5.151 13 N -0.415 5.415 14 N -0.376 5.376 15 C -0.366 4.366 16 H 0.093 0.907 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.796 3.204 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.204 1.204 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.256 0.744 31 H 0.237 0.763 32 H 0.204 0.796 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.412 -2.390 24.130 24.368 hybrid contribution 0.508 0.719 -2.620 2.764 sum 2.920 -1.671 21.510 21.772 Atomic orbital electron populations 1.22269 0.97206 1.01000 1.00885 1.20444 0.93103 0.95303 0.85487 0.93587 1.21927 0.92420 1.02120 0.99078 1.21271 0.95504 0.96571 0.85889 1.45760 1.06675 1.55389 1.26713 1.17099 0.82959 0.79298 0.82971 1.90845 1.56359 1.47241 1.49485 1.22137 0.91484 1.05441 0.98560 1.23806 0.97022 0.97233 0.92404 1.72154 1.34667 1.20386 1.16949 1.78690 0.80672 1.35576 1.20175 1.72219 1.41182 1.16914 1.11146 1.42658 1.78409 1.10252 1.06313 1.19577 1.34475 0.94136 0.88460 0.90738 1.25472 1.03270 0.96829 1.01287 1.69807 1.52882 1.10187 1.29250 0.85311 0.77894 0.77338 0.79848 1.20718 1.22491 1.20383 0.90615 0.94796 0.93742 0.91132 0.87739 0.91932 0.93664 0.74434 0.76333 0.79645 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.49 71.98 0.68 -4.30 16 2 C 0.17 6.05 2.89 44.99 0.13 6.18 16 3 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 4 C -0.12 -3.32 4.87 30.59 0.15 -3.17 16 5 C 0.13 4.27 5.56 86.38 0.48 4.75 16 6 N -0.69 -18.98 5.55 -466.05 -2.59 -21.57 16 7 C 0.60 17.91 7.82 86.76 0.68 18.59 16 8 O -0.56 -21.23 16.80 -3.91 -0.07 -21.29 16 9 C 0.00 -0.09 6.81 41.98 0.29 0.20 16 10 C 0.09 1.80 11.22 85.22 0.96 2.76 16 11 N -0.60 -11.06 11.41 -92.44 -1.05 -12.11 16 12 S 0.81 10.53 23.69 -56.49 -1.34 9.19 16 13 N -0.56 -10.81 11.00 -80.58 -0.89 -11.70 16 14 N -0.74 -36.09 4.57 -322.95 -1.48 -37.57 16 15 C -0.23 -12.96 9.93 84.03 0.83 -12.13 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 18 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 19 Si 0.97 46.97 29.55 68.60 2.03 48.99 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 29 H 0.04 1.90 7.75 -2.39 -0.02 1.88 16 30 H 0.42 9.13 8.06 -92.71 -0.75 8.38 16 31 H 0.22 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.37 19.77 7.80 -92.70 -0.72 19.05 16 33 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.01 305.80 -0.76 -71.76 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.32 Total: 25.26 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 4.66 Total: 8.90 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -5.72 Total: -142.82 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.07 Total: -21.29 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 16 Polarization: 10.53 SS G_CDS: -1.34 Total: 9.19 kcal Total: -71.01 -0.76 -71.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484989992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.245 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds