Wall clock time and date at job start Mon Mar 30 2020 01:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47272 * 2 1 4 4 C 1.36936 * 120.00024 * 275.31163 * 3 2 1 5 5 H 1.08002 * 120.00385 * 37.57484 * 4 3 2 6 6 C 1.38815 * 119.99902 * 217.57625 * 4 3 2 7 7 N 1.31626 * 120.00174 * 21.42859 * 6 4 3 8 8 Si 1.86804 * 120.00109 * 201.43174 * 6 4 3 9 9 H 1.48498 * 109.46839 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47172 * 119.99919 * 8 6 4 11 11 H 1.48495 * 109.47080 * 240.00100 * 8 6 4 12 12 C 1.46499 * 119.99990 * 95.30868 * 3 2 1 13 13 C 1.53001 * 109.47526 * 269.99900 * 12 3 2 14 14 N 1.46499 * 109.47526 * 179.97438 * 13 12 3 15 15 C 1.34772 * 119.99895 * 180.02562 * 14 13 12 16 16 O 1.21570 * 120.00314 * 359.97438 * 15 14 13 17 17 C 1.47750 * 119.99877 * 180.27669 * 15 14 13 18 18 C 1.39355 * 124.11812 * 179.45215 * 17 15 14 19 19 N 1.30098 * 112.14333 * 179.77897 * 18 17 15 20 20 S 1.55922 * 108.75584 * 0.46319 * 19 18 17 21 21 N 1.31497 * 124.11589 * 359.74867 * 17 15 14 22 22 H 1.08999 * 109.46792 * 59.99896 * 1 2 3 23 23 H 1.09000 * 109.47139 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47087 * 300.00179 * 1 2 3 25 25 H 1.08999 * 109.47087 * 239.99821 * 2 1 3 26 26 H 1.08999 * 109.46792 * 120.00104 * 2 1 3 27 27 H 0.96998 * 120.00245 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47418 * 150.00090 * 12 3 2 29 29 H 1.09004 * 109.47263 * 30.00326 * 12 3 2 30 30 H 1.09001 * 109.46617 * 59.99699 * 13 12 3 31 31 H 1.09004 * 109.47198 * 300.00466 * 13 12 3 32 32 H 0.97004 * 119.99625 * 0.02562 * 14 13 12 33 33 H 1.08000 * 123.92862 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9628 6 6 3.2112 2.9289 -1.3728 7 7 4.3028 2.7980 -0.6490 8 14 3.0993 4.2796 -2.6583 9 1 1.7771 4.2143 -3.3312 10 1 3.2551 5.6023 -2.0014 11 1 4.1766 4.0964 -3.6638 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7383 1.8366 14 7 1.4973 3.3892 3.1002 15 6 0.5647 4.0758 3.7895 16 8 -0.5708 4.1553 3.3626 17 6 0.9240 4.7374 5.0608 18 6 0.0329 5.4770 5.8361 19 7 0.5941 5.9519 6.9095 20 16 2.0917 5.5182 6.9260 21 7 2.1248 4.7048 5.5956 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.0492 3.4026 -0.7835 28 1 3.1617 2.7640 1.0860 29 1 2.7255 1.2832 1.9722 30 1 0.3542 2.0068 2.0139 31 1 0.7903 3.4876 1.1277 32 1 2.4035 3.3260 3.4406 33 1 -1.0038 5.6347 5.5778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492919133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:44 Heat of formation + Delta-G solvation = 19.811827 kcal Electronic energy + Delta-G solvation = -18221.329706 eV Core-core repulsion = 15216.127175 eV Total energy + Delta-G solvation = -3005.202531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15938 -40.14513 -38.09208 -35.81736 -34.58160 -33.82494 -31.38439 -29.63911 -28.25883 -26.18907 -24.43492 -23.04292 -22.15317 -21.41935 -20.37032 -19.07454 -18.34273 -17.26394 -16.99424 -16.88737 -16.30078 -16.14368 -15.54051 -15.43691 -15.04092 -14.37147 -14.09516 -13.78582 -13.32016 -13.20221 -13.02944 -12.64703 -12.53341 -12.37348 -12.28430 -12.27511 -12.10347 -12.03032 -11.68742 -11.52169 -11.22577 -10.55708 -10.32105 -10.02567 -8.60430 -7.86103 -5.49153 -0.67091 0.33307 0.44377 0.63321 1.42947 1.48035 1.57181 1.98076 2.04362 2.50190 3.21529 3.38550 3.64234 3.83395 4.03102 4.31177 4.40007 4.46613 4.48564 4.72907 4.83258 4.86370 5.10425 5.18660 5.27153 5.31068 5.35958 5.58602 5.65844 5.74220 6.40088 6.47423 6.99497 7.15188 7.82432 8.34761 9.10027 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.004659 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.022179 B = 6008.286464 C = 6610.349769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.269 4.269 5 H 0.055 0.945 6 C -0.029 4.029 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.287 1.287 12 C 0.144 3.856 13 C 0.118 3.882 14 N -0.694 5.694 15 C 0.597 3.403 16 O -0.561 6.561 17 C -0.004 4.004 18 C 0.090 3.910 19 N -0.596 5.596 20 S 0.803 5.197 21 N -0.568 5.568 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.253 0.747 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.414 0.586 33 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 3.359 15.762 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.399 4.399 5 H 0.072 0.928 6 C -0.227 4.227 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.016 3.984 13 C -0.008 4.008 14 N -0.345 5.345 15 C 0.378 3.622 16 O -0.439 6.439 17 C -0.176 4.176 18 C -0.102 4.102 19 N -0.439 5.439 20 S 0.844 5.156 21 N -0.420 5.420 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.250 0.750 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.573 3.842 16.806 17.431 hybrid contribution -0.822 0.386 -1.938 2.141 sum -3.395 4.228 14.868 15.826 Atomic orbital electron populations 1.22215 0.97766 1.00913 1.00546 1.21024 0.93333 0.85323 0.99261 1.43854 1.76388 1.09683 1.01894 1.19217 1.04372 1.21629 0.94710 0.92767 1.25773 0.93996 1.02899 1.00003 1.70096 1.03630 1.37952 1.43907 0.85487 0.77752 0.79643 0.79252 1.19503 1.21733 1.21403 1.20911 0.94383 0.96779 0.86287 1.22098 1.00280 0.95735 0.82687 1.45848 1.13900 1.51571 1.23142 1.17101 0.84670 0.78380 0.82069 1.90792 1.21005 1.62609 1.69524 1.22214 0.88989 1.06031 1.00405 1.23819 1.03984 0.94420 0.87950 1.72176 1.16216 1.29275 1.26204 1.78691 1.02546 1.24341 1.09981 1.72253 1.27047 1.25229 1.17476 0.94564 0.91264 0.93812 0.94478 0.93076 0.93744 0.91016 0.93786 0.92274 0.94159 0.75015 0.75869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 10.21 71.98 0.73 -4.69 16 2 C 0.14 5.50 6.44 86.38 0.56 6.06 16 3 N -0.60 -28.77 2.43 -702.01 -1.71 -30.48 16 4 C -0.27 -14.45 9.45 84.03 0.79 -13.65 16 5 H 0.05 2.95 7.92 -2.91 -0.02 2.92 16 6 C -0.03 -1.56 4.95 84.86 0.42 -1.14 16 7 N -0.91 -51.36 11.47 21.65 0.25 -51.11 16 8 Si 0.95 44.11 29.61 68.60 2.03 46.15 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.14 6.38 5.45 86.38 0.47 6.85 16 13 C 0.12 4.74 6.00 86.38 0.52 5.26 16 14 N -0.69 -23.93 5.55 -466.06 -2.59 -26.51 16 15 C 0.60 20.01 7.82 86.76 0.68 20.69 16 16 O -0.56 -21.78 16.81 -3.94 -0.07 -21.84 16 17 C 0.00 -0.10 6.81 41.98 0.29 0.19 16 18 C 0.09 2.01 11.22 85.22 0.96 2.97 16 19 N -0.60 -12.06 11.41 -92.42 -1.05 -13.11 16 20 S 0.80 12.90 23.69 -56.49 -1.34 11.57 16 21 N -0.57 -13.39 11.00 -80.55 -0.89 -14.28 16 22 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.53 6.64 -2.39 -0.02 1.51 16 25 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 26 H 0.05 1.89 7.83 -2.39 -0.02 1.87 16 27 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.07 3.65 5.52 -2.39 -0.01 3.63 16 29 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16 30 H 0.06 2.35 6.64 -2.39 -0.02 2.34 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.41 13.06 8.06 -92.71 -0.75 12.31 16 33 H 0.23 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -64.14 300.99 0.45 -63.70 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.40 Total: 13.40 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 5.42 Total: 22.54 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -5.99 Total: -135.50 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.07 Total: -21.84 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 12.90 SS G_CDS: -1.34 Total: 11.57 kcal Total: -64.14 0.45 -63.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492919133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.507 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds