Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47065 * 2 1 4 4 C 1.46495 * 119.99715 * 262.93951 * 3 2 1 5 5 C 1.53005 * 109.47132 * 269.99802 * 4 3 2 6 6 N 1.46498 * 109.47156 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99608 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99935 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99650 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00455 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99698 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47131 * 60.00098 * 11 9 7 13 13 H 1.48500 * 109.47075 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47296 * 299.99832 * 11 9 7 15 15 C 1.34768 * 119.99961 * 82.93153 * 3 2 1 16 16 O 1.21627 * 119.99977 * 182.97203 * 15 3 2 17 17 C 1.47177 * 120.00279 * 2.98074 * 15 3 2 18 18 C 1.38246 * 128.47487 * 172.90636 * 17 15 3 19 19 N 1.31246 * 111.88487 * 180.26465 * 18 17 15 20 20 N 1.27330 * 120.03642 * 359.50759 * 19 18 17 21 21 S 1.56640 * 109.74419 * 0.48570 * 20 19 18 22 22 H 1.09002 * 109.47114 * 299.99828 * 1 2 3 23 23 H 1.08997 * 109.47285 * 60.00325 * 1 2 3 24 24 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47114 * 240.00172 * 2 1 3 26 26 H 1.08997 * 109.47285 * 119.99675 * 2 1 3 27 27 H 1.09001 * 109.47502 * 29.99558 * 4 3 2 28 28 H 1.09003 * 109.47355 * 150.00066 * 4 3 2 29 29 H 1.09001 * 109.46728 * 300.00230 * 5 4 3 30 30 H 1.09003 * 109.46785 * 59.99914 * 5 4 3 31 31 H 0.96994 * 120.00233 * 359.97438 * 6 5 4 32 32 H 0.96996 * 120.00323 * 180.02562 * 10 9 7 33 33 H 1.08001 * 124.05906 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4095 2.0198 -1.2591 5 6 3.8954 1.7650 -1.5201 6 7 4.2868 2.4041 -2.7789 7 6 5.5792 2.3098 -3.2218 8 1 6.3100 1.7648 -2.6428 9 6 5.9498 2.9149 -4.4148 10 7 5.0591 3.5788 -5.1206 11 14 7.7130 2.7870 -5.0185 12 1 8.0662 1.3583 -5.2160 13 1 7.8492 3.5137 -6.3064 14 1 8.6254 3.3880 -4.0129 15 6 2.1075 2.0645 1.1583 16 8 2.4614 3.2281 1.1522 17 6 1.7770 1.4024 2.4305 18 6 1.9325 1.8846 3.7168 19 7 1.5345 1.0157 4.6163 20 7 1.0646 -0.1099 4.2511 21 16 1.0827 -0.2089 2.6879 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8205 1.6032 -2.0762 28 1 2.2311 3.0931 -1.1930 29 1 4.4845 2.1816 -0.7030 30 1 4.0738 0.6917 -1.5862 31 1 3.6303 2.8933 -3.2991 32 1 5.3181 4.0013 -5.9545 33 1 2.3375 2.8574 3.9533 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497359773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = 62.680879 kcal Electronic energy + Delta-G solvation = -18193.180467 eV Core-core repulsion = 15189.836878 eV Total energy + Delta-G solvation = -3003.343589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98904 -39.97382 -36.48660 -34.79353 -32.58744 -31.63345 -30.58094 -28.54700 -27.00492 -24.24418 -23.93658 -22.61106 -21.37386 -19.91437 -19.10857 -17.40632 -17.25061 -16.47720 -16.15274 -15.56425 -14.93154 -14.52033 -14.50096 -13.98449 -13.77111 -13.33790 -13.11768 -12.92691 -12.85015 -12.27631 -12.14949 -11.83625 -11.44115 -11.08954 -10.95025 -10.73734 -10.30351 -10.25206 -10.16281 -10.13725 -9.83558 -9.76041 -8.91290 -8.81625 -6.98731 -5.79888 -3.09819 -0.47714 0.55416 1.28702 1.79224 2.65899 2.84551 3.42959 3.47468 3.48492 3.79357 4.15608 4.45984 4.51350 4.58218 4.74323 4.97506 5.32109 5.36351 5.38270 5.41306 5.57561 5.65206 5.81822 5.90745 5.98084 6.35673 6.60281 6.76359 7.13342 7.45178 7.66314 7.88233 8.38233 9.49499 10.04007 10.39041 11.42787 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035406 B = 0.003899 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.636264 B = 7179.689365 C = 7433.526302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 N -0.596 5.596 4 C 0.109 3.891 5 C 0.141 3.859 6 N -0.730 5.730 7 C -0.242 4.242 8 H 0.070 0.930 9 C -0.011 4.011 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.596 3.404 16 O -0.507 6.507 17 C -0.286 4.286 18 C 0.070 3.930 19 N -0.254 5.254 20 N -0.290 5.290 21 S 0.443 5.557 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.024 0.976 30 H 0.020 0.980 31 H 0.385 0.615 32 H 0.257 0.743 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 -9.608 13.403 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.033 4.033 3 N -0.329 5.329 4 C -0.013 4.013 5 C 0.013 3.987 6 N -0.375 5.375 7 C -0.373 4.373 8 H 0.088 0.912 9 C -0.207 4.207 10 N -0.581 5.581 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.380 3.620 16 O -0.383 6.383 17 C -0.427 4.427 18 C -0.097 4.097 19 N -0.118 5.118 20 N -0.270 5.270 21 S 0.580 5.420 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.334 -10.667 14.193 21.618 hybrid contribution 1.402 1.388 -0.817 2.136 sum -10.932 -9.279 13.375 19.609 Atomic orbital electron populations 1.22391 0.94944 1.03457 1.03012 1.21932 0.95088 0.82804 1.03457 1.47786 1.64064 1.13789 1.07271 1.21850 0.97335 0.99522 0.82565 1.20926 0.91346 0.96063 0.90396 1.42176 1.09898 1.63825 1.21554 1.19148 0.86740 1.28130 1.03268 0.91222 1.24743 0.97914 1.00414 0.97663 1.69641 1.33061 1.39322 1.16083 0.86241 0.84402 0.77461 0.77917 1.21223 1.21600 1.21190 1.16556 0.78303 0.85728 0.81380 1.90895 1.46286 1.15260 1.85810 1.28129 1.13319 1.01299 0.99961 1.24494 0.97753 1.01440 0.85999 1.70849 1.11900 0.96996 1.32095 1.78593 1.18862 1.16097 1.13431 1.83103 1.43079 1.11592 1.04241 0.92688 0.90713 0.90131 0.87467 0.91439 0.89713 0.89039 0.95859 0.96254 0.78181 0.93362 0.76870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.10 37.16 0.34 -0.85 16 2 C 0.09 0.80 5.68 -4.04 -0.02 0.77 16 3 N -0.60 -7.56 2.49 -175.04 -0.44 -7.99 16 4 C 0.11 1.69 5.51 -4.04 -0.02 1.66 16 5 C 0.14 2.80 6.58 -4.04 -0.03 2.77 16 6 N -0.73 -18.31 5.60 -59.90 -0.34 -18.65 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 11 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.60 8.41 7.60 -12.63 -0.10 8.32 16 16 O -0.51 -9.10 16.55 5.25 0.09 -9.02 16 17 C -0.29 -3.27 6.33 -35.95 -0.23 -3.50 16 18 C 0.07 0.78 11.56 -17.80 -0.21 0.58 16 19 N -0.25 -3.13 11.54 30.36 0.35 -2.78 16 20 N -0.29 -3.36 12.51 60.35 0.75 -2.60 16 21 S 0.44 3.86 16.80 -107.50 -1.81 2.06 16 22 H 0.05 0.39 6.29 -51.93 -0.33 0.06 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.11 0.84 8.02 -51.93 -0.42 0.42 16 26 H 0.07 0.51 4.47 -24.42 -0.11 0.40 16 27 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 28 H 0.09 1.58 7.38 -51.93 -0.38 1.20 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.38 9.99 7.67 -40.82 -0.31 9.68 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.21 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 295.94 15.07 4.46 4.46 Total: -1.00 -33.67 295.94 -5.36 -39.03 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.63 Total: 3.02 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.51 Total: 2.42 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 1.06 Total: -59.24 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.81 Total: 2.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.67 -5.36 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497359773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.712 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds