Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47065 * 2 1 4 4 C 1.46495 * 119.99715 * 262.93951 * 3 2 1 5 5 C 1.53005 * 109.47132 * 269.99802 * 4 3 2 6 6 N 1.46498 * 109.47156 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99608 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99935 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99650 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00455 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99698 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47131 * 60.00098 * 11 9 7 13 13 H 1.48500 * 109.47075 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47296 * 299.99832 * 11 9 7 15 15 C 1.34768 * 119.99961 * 82.93153 * 3 2 1 16 16 O 1.21627 * 119.99977 * 182.97203 * 15 3 2 17 17 C 1.47177 * 120.00279 * 2.98074 * 15 3 2 18 18 C 1.38246 * 128.47487 * 172.90636 * 17 15 3 19 19 N 1.31246 * 111.88487 * 180.26465 * 18 17 15 20 20 N 1.27330 * 120.03642 * 359.50759 * 19 18 17 21 21 S 1.56640 * 109.74419 * 0.48570 * 20 19 18 22 22 H 1.09002 * 109.47114 * 299.99828 * 1 2 3 23 23 H 1.08997 * 109.47285 * 60.00325 * 1 2 3 24 24 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47114 * 240.00172 * 2 1 3 26 26 H 1.08997 * 109.47285 * 119.99675 * 2 1 3 27 27 H 1.09001 * 109.47502 * 29.99558 * 4 3 2 28 28 H 1.09003 * 109.47355 * 150.00066 * 4 3 2 29 29 H 1.09001 * 109.46728 * 300.00230 * 5 4 3 30 30 H 1.09003 * 109.46785 * 59.99914 * 5 4 3 31 31 H 0.96994 * 120.00233 * 359.97438 * 6 5 4 32 32 H 0.96996 * 120.00323 * 180.02562 * 10 9 7 33 33 H 1.08001 * 124.05906 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4095 2.0198 -1.2591 5 6 3.8954 1.7650 -1.5201 6 7 4.2868 2.4041 -2.7789 7 6 5.5792 2.3098 -3.2218 8 1 6.3100 1.7648 -2.6428 9 6 5.9498 2.9149 -4.4148 10 7 5.0591 3.5788 -5.1206 11 14 7.7130 2.7870 -5.0185 12 1 8.0662 1.3583 -5.2160 13 1 7.8492 3.5137 -6.3064 14 1 8.6254 3.3880 -4.0129 15 6 2.1075 2.0645 1.1583 16 8 2.4614 3.2281 1.1522 17 6 1.7770 1.4024 2.4305 18 6 1.9325 1.8846 3.7168 19 7 1.5345 1.0157 4.6163 20 7 1.0646 -0.1099 4.2511 21 16 1.0827 -0.2089 2.6879 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8205 1.6032 -2.0762 28 1 2.2311 3.0931 -1.1930 29 1 4.4845 2.1816 -0.7030 30 1 4.0738 0.6917 -1.5862 31 1 3.6303 2.8933 -3.2991 32 1 5.3181 4.0013 -5.9545 33 1 2.3375 2.8574 3.9533 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497359773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = 37.947556 kcal Electronic energy + Delta-G solvation = -18194.252984 eV Core-core repulsion = 15189.836878 eV Total energy + Delta-G solvation = -3004.416107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88635 -41.03738 -37.67970 -36.49367 -33.94886 -32.94556 -31.73432 -29.84534 -28.20030 -25.86448 -24.76932 -23.98416 -22.72565 -20.82701 -20.10833 -19.16145 -18.35037 -17.60289 -17.15827 -16.75891 -16.21963 -15.97884 -15.54001 -15.26211 -15.14443 -14.93231 -14.60143 -13.90029 -13.73747 -13.13085 -13.04394 -12.93239 -12.79418 -12.75598 -12.51493 -12.32294 -12.16454 -11.87306 -11.38335 -11.15486 -10.99843 -10.95067 -10.60324 -9.93185 -9.05224 -7.96775 -5.27157 -1.35348 -0.27071 0.46604 0.88402 1.47701 1.51247 1.56736 1.62986 1.81351 2.56383 2.92212 3.28261 3.37165 3.64633 3.76216 4.01325 4.11192 4.14580 4.28761 4.40138 4.56477 4.56751 4.74934 4.85413 5.01561 5.08100 5.30070 5.35420 5.48058 6.08894 6.24792 6.60526 6.80796 7.31695 8.03282 8.28070 9.26185 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035406 B = 0.003899 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.636264 B = 7179.689365 C = 7433.526302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 N -0.592 5.592 4 C 0.125 3.875 5 C 0.145 3.855 6 N -0.742 5.742 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.069 4.069 10 N -0.966 5.966 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.293 1.293 14 H -0.282 1.282 15 C 0.595 3.405 16 O -0.558 6.558 17 C -0.316 4.316 18 C 0.073 3.927 19 N -0.279 5.279 20 N -0.318 5.318 21 S 0.547 5.453 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.001 0.999 30 H 0.036 0.964 31 H 0.377 0.623 32 H 0.253 0.747 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -11.858 13.576 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.040 4.040 3 N -0.324 5.324 4 C 0.002 3.998 5 C 0.017 3.983 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.262 4.262 10 N -0.616 5.616 11 Si 0.803 3.197 12 H -0.199 1.199 13 H -0.219 1.219 14 H -0.208 1.208 15 C 0.381 3.619 16 O -0.437 6.437 17 C -0.456 4.456 18 C -0.095 4.095 19 N -0.141 5.141 20 N -0.298 5.298 21 S 0.683 5.317 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.209 0.791 32 H 0.062 0.938 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.864 -12.986 14.415 23.279 hybrid contribution 1.501 1.970 -0.858 2.621 sum -11.363 -11.016 13.557 20.839 Atomic orbital electron populations 1.22429 0.93063 1.05518 1.02736 1.22298 0.96610 0.80384 1.04680 1.47827 1.63448 1.15264 1.05883 1.21486 0.94841 0.98858 0.84645 1.21003 0.93854 0.96006 0.87411 1.42351 1.09039 1.64150 1.23038 1.19537 0.88037 1.27486 1.03286 0.90896 1.25562 1.01896 1.00641 0.98109 1.69790 1.34918 1.40532 1.16379 0.85210 0.79684 0.77837 0.77005 1.19933 1.21880 1.20801 1.16865 0.77375 0.85266 0.82363 1.90863 1.48622 1.17510 1.86659 1.27882 1.15362 1.03620 0.98742 1.24689 0.97081 1.01732 0.85975 1.70922 1.13148 0.97385 1.32674 1.78335 1.19367 1.16255 1.15874 1.82630 1.39528 1.08070 1.01439 0.93115 0.90925 0.86833 0.85943 0.90380 0.87288 0.91306 0.98137 0.94644 0.79072 0.93784 0.76099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.10 71.98 0.65 -1.08 16 2 C 0.08 1.18 5.68 86.38 0.49 1.67 16 3 N -0.59 -14.26 2.49 -825.97 -2.06 -16.32 16 4 C 0.12 3.79 5.51 86.38 0.48 4.26 16 5 C 0.14 5.71 6.58 86.38 0.57 6.28 16 6 N -0.74 -37.47 5.60 -343.44 -1.92 -39.40 16 7 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 10 N -0.97 -58.43 13.06 21.65 0.28 -58.14 16 11 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.59 16.66 7.60 86.59 0.66 17.32 16 16 O -0.56 -20.71 16.55 -4.12 -0.07 -20.78 16 17 C -0.32 -6.88 6.33 24.62 0.16 -6.72 16 18 C 0.07 1.61 11.56 84.78 0.98 2.59 16 19 N -0.28 -6.60 11.54 -57.86 -0.67 -7.27 16 20 N -0.32 -6.77 12.51 37.02 0.46 -6.31 16 21 S 0.55 8.00 16.80 -56.49 -0.95 7.05 16 22 H 0.05 0.55 6.29 -2.39 -0.02 0.53 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.12 1.44 8.02 -2.39 -0.02 1.42 16 26 H 0.08 0.90 4.47 -19.88 -0.09 0.81 16 27 H 0.11 2.80 8.07 -2.39 -0.02 2.78 16 28 H 0.07 2.44 7.38 -2.39 -0.02 2.42 16 29 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.38 19.89 7.67 -92.71 -0.71 19.18 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.22 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -73.56 295.94 2.75 -70.80 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.36 Total: 15.03 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.29 Total: 7.59 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -3.90 Total: -127.44 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.07 Total: -20.78 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 8.00 SS G_CDS: -0.95 Total: 7.05 kcal Total: -73.56 2.75 -70.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497359773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.752 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds