Wall clock time and date at job start Mon Mar 30 2020 01:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46767 * 2 1 4 4 C 1.46502 * 120.00038 * 266.47962 * 3 2 1 5 5 C 1.53003 * 109.47114 * 270.00430 * 4 3 2 6 6 N 1.46502 * 109.47114 * 180.02562 * 5 4 3 7 7 C 1.36938 * 119.99655 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00374 * 359.97438 * 7 6 5 9 9 C 1.38816 * 119.99303 * 179.97438 * 7 6 5 10 10 N 1.31613 * 120.00230 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99391 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47535 * 89.99933 * 11 9 7 13 13 H 1.48505 * 109.46832 * 209.99950 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99319 * 11 9 7 15 15 C 1.34777 * 120.00308 * 86.48285 * 3 2 1 16 16 O 1.21566 * 120.00445 * 174.65560 * 15 3 2 17 17 C 1.47753 * 119.99726 * 354.93165 * 15 3 2 18 18 C 1.39356 * 124.11567 * 173.86630 * 17 15 3 19 19 N 1.30097 * 112.14203 * 179.77974 * 18 17 15 20 20 S 1.55923 * 108.75417 * 0.46188 * 19 18 17 21 21 N 1.31496 * 124.11722 * 354.16171 * 17 15 3 22 22 H 1.09005 * 109.46910 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47513 * 300.00363 * 1 2 3 25 25 H 1.08994 * 109.47169 * 239.99855 * 2 1 3 26 26 H 1.09005 * 109.46910 * 119.99623 * 2 1 3 27 27 H 1.08994 * 109.47032 * 30.00221 * 4 3 2 28 28 H 1.08995 * 109.47042 * 150.00227 * 4 3 2 29 29 H 1.09008 * 109.46893 * 299.99703 * 5 4 3 30 30 H 1.08995 * 109.47266 * 59.99421 * 5 4 3 31 31 H 0.96993 * 119.99767 * 359.97438 * 6 5 4 32 32 H 0.97004 * 119.99682 * 180.02562 * 10 9 7 33 33 H 1.08000 * 123.92484 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3358 2.0459 -1.2663 5 6 3.8038 1.7974 -1.6187 6 7 4.1216 2.4625 -2.8847 7 6 5.3862 2.3791 -3.4034 8 1 6.1493 1.8234 -2.8790 9 6 5.6870 3.0090 -4.6033 10 7 4.7568 3.6859 -5.2426 11 14 7.4119 2.8946 -5.3112 12 1 7.5055 1.7069 -6.1975 13 1 7.7079 4.1212 -6.0943 14 1 8.3936 2.7651 -4.2046 15 6 2.1753 2.0405 1.1650 16 8 2.6713 3.1504 1.1733 17 6 1.7503 1.4118 2.4327 18 6 1.9825 1.9593 3.6930 19 7 1.5054 1.2141 4.6468 20 16 0.8462 -0.0492 4.0138 21 7 1.1119 0.2648 2.5094 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6999 1.6459 -2.0560 28 1 2.1622 3.1174 -1.1678 29 1 4.4398 2.1974 -0.8289 30 1 3.9775 0.7258 -1.7171 31 1 3.4362 2.9620 -3.3554 32 1 4.9670 4.1257 -6.0812 33 1 2.4957 2.8950 3.8584 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497360159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:37 Heat of formation + Delta-G solvation = 54.478124 kcal Electronic energy + Delta-G solvation = -18276.596001 eV Core-core repulsion = 15272.896713 eV Total energy + Delta-G solvation = -3003.699287 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42129 -39.23052 -36.33952 -34.74130 -33.63870 -31.65566 -30.27866 -28.39727 -26.95492 -24.18889 -23.57881 -22.49396 -21.36076 -19.71210 -19.37559 -17.28062 -17.13208 -16.28378 -16.05113 -15.53228 -14.94471 -14.39553 -14.06413 -14.01857 -13.57328 -13.23277 -12.94414 -12.54873 -12.42802 -12.04234 -11.73049 -11.51221 -11.28923 -11.10588 -10.98212 -10.89561 -10.71899 -10.60841 -10.11280 -9.98440 -9.70837 -9.45203 -8.85476 -8.57368 -6.91576 -5.74390 -3.03570 0.17381 1.14668 1.36197 1.38569 2.92385 3.06675 3.45963 3.51052 3.53190 4.16793 4.46113 4.63245 4.88317 5.04523 5.25424 5.28961 5.43675 5.51468 5.64090 5.72144 5.81992 5.88977 6.02862 6.13349 6.16739 6.23663 6.55820 6.73715 6.90459 7.38354 7.72423 8.06176 8.44068 9.55156 10.10932 10.46143 11.48553 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038278 B = 0.003762 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.317784 B = 7441.897507 C = 7734.386703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 N -0.585 5.585 4 C 0.109 3.891 5 C 0.142 3.858 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.595 3.405 16 O -0.515 6.515 17 C 0.018 3.982 18 C 0.091 3.909 19 N -0.577 5.577 20 S 0.688 5.312 21 N -0.530 5.530 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.019 0.981 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 -9.990 18.246 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.017 4.017 3 N -0.317 5.317 4 C -0.013 4.013 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.377 3.623 16 O -0.390 6.390 17 C -0.157 4.157 18 C -0.103 4.103 19 N -0.417 5.417 20 S 0.730 5.270 21 N -0.380 5.380 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.334 -11.053 19.171 25.335 hybrid contribution 1.521 1.466 -1.371 2.519 sum -10.813 -9.587 17.800 22.928 Atomic orbital electron populations 1.22068 0.95702 1.01885 1.01730 1.21806 0.94828 0.81596 1.03422 1.47777 1.63502 1.14603 1.05823 1.21811 0.97975 0.98709 0.82794 1.20916 0.92028 0.95793 0.89883 1.42199 1.11323 1.62274 1.21707 1.19207 0.87954 1.26931 1.02831 0.91184 1.24741 0.97863 1.00441 0.97881 1.69659 1.32303 1.38490 1.17760 0.86165 0.84062 0.76980 0.78847 1.21723 1.21717 1.20737 1.16847 0.79155 0.84844 0.81473 1.90878 1.43370 1.19089 1.85640 1.22637 1.02940 0.92138 0.97935 1.23820 0.99160 1.01955 0.85381 1.72270 1.19531 1.11838 1.38067 1.79154 1.40295 1.19811 0.87709 1.73137 1.19580 1.19058 1.26207 0.92913 0.91861 0.92343 0.90204 0.88930 0.90014 0.89496 0.95679 0.96346 0.78243 0.93487 0.76931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.63 37.16 0.36 -1.20 16 2 C 0.11 1.24 5.67 -4.04 -0.02 1.21 16 3 N -0.59 -8.54 2.48 -174.84 -0.43 -8.97 16 4 C 0.11 1.87 5.47 -4.04 -0.02 1.84 16 5 C 0.14 3.01 6.58 -4.04 -0.03 2.98 16 6 N -0.73 -19.07 5.60 -59.90 -0.34 -19.40 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 11 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.60 9.05 7.64 -12.37 -0.09 8.95 16 16 O -0.52 -9.49 16.45 5.31 0.09 -9.40 16 17 C 0.02 0.22 6.43 -83.71 -0.54 -0.32 16 18 C 0.09 0.97 11.23 -17.87 -0.20 0.77 16 19 N -0.58 -5.82 11.41 19.43 0.22 -5.59 16 20 S 0.69 5.26 23.69 -107.50 -2.55 2.72 16 21 N -0.53 -5.33 5.96 23.18 0.14 -5.19 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 25 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 26 H 0.09 1.02 5.70 -51.93 -0.30 0.73 16 27 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.09 1.61 7.50 -51.93 -0.39 1.22 16 29 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.38 10.37 7.67 -40.82 -0.31 10.05 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.21 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -33.29 297.87 -7.30 -40.59 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.83 Total: 4.13 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.79 Total: 6.77 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: 0.32 Total: -67.02 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -2.55 Total: 2.72 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.29 -7.30 -40.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497360159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.067 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds