Wall clock time and date at job start Mon Mar 30 2020 01:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46767 * 2 1 4 4 C 1.46502 * 120.00038 * 266.47962 * 3 2 1 5 5 C 1.53003 * 109.47114 * 270.00430 * 4 3 2 6 6 N 1.46502 * 109.47114 * 180.02562 * 5 4 3 7 7 C 1.36938 * 119.99655 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00374 * 359.97438 * 7 6 5 9 9 C 1.38816 * 119.99303 * 179.97438 * 7 6 5 10 10 N 1.31613 * 120.00230 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99391 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47535 * 89.99933 * 11 9 7 13 13 H 1.48505 * 109.46832 * 209.99950 * 11 9 7 14 14 H 1.48496 * 109.47166 * 329.99319 * 11 9 7 15 15 C 1.34777 * 120.00308 * 86.48285 * 3 2 1 16 16 O 1.21566 * 120.00445 * 174.65560 * 15 3 2 17 17 C 1.47753 * 119.99726 * 354.93165 * 15 3 2 18 18 C 1.39356 * 124.11567 * 173.86630 * 17 15 3 19 19 N 1.30097 * 112.14203 * 179.77974 * 18 17 15 20 20 S 1.55923 * 108.75417 * 0.46188 * 19 18 17 21 21 N 1.31496 * 124.11722 * 354.16171 * 17 15 3 22 22 H 1.09005 * 109.46910 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47513 * 300.00363 * 1 2 3 25 25 H 1.08994 * 109.47169 * 239.99855 * 2 1 3 26 26 H 1.09005 * 109.46910 * 119.99623 * 2 1 3 27 27 H 1.08994 * 109.47032 * 30.00221 * 4 3 2 28 28 H 1.08995 * 109.47042 * 150.00227 * 4 3 2 29 29 H 1.09008 * 109.46893 * 299.99703 * 5 4 3 30 30 H 1.08995 * 109.47266 * 59.99421 * 5 4 3 31 31 H 0.96993 * 119.99767 * 359.97438 * 6 5 4 32 32 H 0.97004 * 119.99682 * 180.02562 * 10 9 7 33 33 H 1.08000 * 123.92484 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3358 2.0459 -1.2663 5 6 3.8038 1.7974 -1.6187 6 7 4.1216 2.4625 -2.8847 7 6 5.3862 2.3791 -3.4034 8 1 6.1493 1.8234 -2.8790 9 6 5.6870 3.0090 -4.6033 10 7 4.7568 3.6859 -5.2426 11 14 7.4119 2.8946 -5.3112 12 1 7.5055 1.7069 -6.1975 13 1 7.7079 4.1212 -6.0943 14 1 8.3936 2.7651 -4.2046 15 6 2.1753 2.0405 1.1650 16 8 2.6713 3.1504 1.1733 17 6 1.7503 1.4118 2.4327 18 6 1.9825 1.9593 3.6930 19 7 1.5054 1.2141 4.6468 20 16 0.8462 -0.0492 4.0138 21 7 1.1119 0.2648 2.5094 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6999 1.6459 -2.0560 28 1 2.1622 3.1174 -1.1678 29 1 4.4398 2.1974 -0.8289 30 1 3.9775 0.7258 -1.7171 31 1 3.4362 2.9620 -3.3554 32 1 4.9670 4.1257 -6.0812 33 1 2.4957 2.8950 3.8584 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497360159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:37 Heat of formation + Delta-G solvation = 30.729355 kcal Electronic energy + Delta-G solvation = -18277.625824 eV Core-core repulsion = 15272.896713 eV Total energy + Delta-G solvation = -3004.729111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.32356 -40.34134 -37.64309 -36.47647 -34.65421 -33.44412 -31.55326 -29.78276 -28.13740 -25.87987 -24.63143 -23.88533 -22.75938 -20.53037 -20.44782 -19.19464 -18.30945 -17.34680 -17.20239 -16.70929 -16.31052 -15.95306 -15.42470 -15.18513 -15.07235 -14.90034 -14.64306 -13.65738 -13.21977 -13.08710 -12.94798 -12.84065 -12.74975 -12.52745 -12.40050 -12.29083 -12.12922 -11.88650 -11.84298 -11.59036 -11.07556 -10.96738 -10.23579 -9.77892 -9.06060 -7.97261 -5.27930 -0.64921 0.36563 0.45213 0.67054 1.47106 1.49667 1.58153 1.80975 1.97301 2.56197 3.25945 3.36318 3.53434 3.99674 4.03711 4.10037 4.18597 4.24571 4.48071 4.49818 4.55415 4.64811 4.87768 5.00435 5.07704 5.11862 5.32196 5.41560 5.44948 5.54845 6.23875 6.24980 6.90353 7.30742 8.01854 8.27770 9.26088 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038278 B = 0.003762 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.317784 B = 7441.897507 C = 7734.386703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.104 3.896 3 N -0.586 5.586 4 C 0.125 3.875 5 C 0.149 3.851 6 N -0.742 5.742 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.977 3.023 12 H -0.282 1.282 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.593 3.407 16 O -0.560 6.560 17 C -0.003 4.003 18 C 0.088 3.912 19 N -0.599 5.599 20 S 0.791 5.209 21 N -0.539 5.539 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.004 0.996 30 H 0.028 0.972 31 H 0.376 0.624 32 H 0.254 0.746 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -12.046 19.436 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 N -0.317 5.317 4 C 0.002 3.998 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.805 3.195 12 H -0.209 1.209 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.376 3.624 16 O -0.438 6.438 17 C -0.175 4.175 18 C -0.104 4.104 19 N -0.441 5.441 20 S 0.833 5.167 21 N -0.392 5.392 22 H 0.064 0.936 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.022 0.978 30 H 0.046 0.954 31 H 0.209 0.791 32 H 0.062 0.938 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.856 -13.135 20.389 27.450 hybrid contribution 1.581 1.948 -1.575 2.962 sum -11.275 -11.187 18.814 24.622 Atomic orbital electron populations 1.22006 0.94216 1.03204 1.01173 1.22029 0.96000 0.79724 1.04039 1.47840 1.63338 1.15698 1.04796 1.21440 0.95550 0.98175 0.84675 1.20948 0.94351 0.95397 0.87219 1.42370 1.10516 1.62600 1.23088 1.19585 0.89065 1.26602 1.03069 0.90933 1.25599 1.01899 1.00460 0.98399 1.69812 1.34310 1.39526 1.18069 0.85096 0.79426 0.76842 0.78107 1.20857 1.21916 1.19707 1.17255 0.78219 0.84387 0.82525 1.90844 1.45371 1.21032 1.86515 1.22014 1.05447 0.93339 0.96701 1.23749 0.99291 1.02269 0.85053 1.72138 1.20356 1.13071 1.38585 1.78803 1.36259 1.16810 0.84874 1.72835 1.19257 1.18425 1.28669 0.93595 0.89517 0.92767 0.89876 0.88027 0.88339 0.91352 0.97757 0.95373 0.79137 0.93765 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.63 71.98 0.69 -1.93 16 2 C 0.10 2.24 5.67 86.38 0.49 2.73 16 3 N -0.59 -16.99 2.48 -825.34 -2.05 -19.04 16 4 C 0.12 4.33 5.47 86.38 0.47 4.80 16 5 C 0.15 6.39 6.58 86.38 0.57 6.96 16 6 N -0.74 -39.49 5.60 -343.44 -1.92 -41.41 16 7 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 9 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 10 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 11 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.59 18.25 7.64 86.76 0.66 18.91 16 16 O -0.56 -21.53 16.45 -3.92 -0.06 -21.60 16 17 C 0.00 -0.08 6.43 41.98 0.27 0.19 16 18 C 0.09 1.81 11.23 85.22 0.96 2.77 16 19 N -0.60 -10.83 11.41 -92.43 -1.05 -11.88 16 20 S 0.79 9.58 23.69 -56.49 -1.34 8.24 16 21 N -0.54 -9.60 5.96 -80.58 -0.48 -10.08 16 22 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.02 6.46 -2.39 -0.02 1.01 16 25 H 0.08 1.73 8.04 -2.39 -0.02 1.71 16 26 H 0.10 2.02 5.70 -2.38 -0.01 2.01 16 27 H 0.10 3.07 8.07 -2.39 -0.02 3.05 16 28 H 0.07 2.63 7.50 -2.39 -0.02 2.62 16 29 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.38 20.86 7.67 -92.71 -0.71 20.15 16 32 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.22 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -71.95 297.87 1.25 -70.69 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.43 Total: 18.89 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.42 Total: 16.97 kcal Atomic # 7 Polarization: -136.87 SS G_CDS: -5.22 Total: -142.09 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.06 Total: -21.60 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 9.58 SS G_CDS: -1.34 Total: 8.24 kcal Total: -71.95 1.25 -70.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497360159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.423 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds