Wall clock time and date at job start Mon Mar 30 2020 01:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46723 * 2 1 4 4 C 1.52995 * 109.47243 * 240.00388 * 2 1 3 5 5 N 1.46500 * 109.47295 * 185.00295 * 4 2 1 6 6 C 1.46509 * 119.99546 * 269.99533 * 5 4 2 7 7 C 1.36931 * 120.00603 * 89.99463 * 5 4 2 8 8 H 1.08002 * 119.99734 * 20.30538 * 7 5 4 9 9 C 1.38811 * 120.00114 * 200.30562 * 7 5 4 10 10 N 1.31613 * 120.00128 * 15.01946 * 9 7 5 11 11 Si 1.86799 * 120.00151 * 195.01284 * 9 7 5 12 12 H 1.48500 * 109.47095 * 85.00071 * 11 9 7 13 13 H 1.48497 * 109.47402 * 205.00402 * 11 9 7 14 14 H 1.48506 * 109.47062 * 325.00198 * 11 9 7 15 15 N 1.46493 * 109.47081 * 119.99942 * 2 1 3 16 16 C 1.34784 * 120.00057 * 275.00049 * 15 2 1 17 17 O 1.21608 * 119.99873 * 359.97438 * 16 15 2 18 18 C 1.47444 * 119.99930 * 180.02562 * 16 15 2 19 19 C 1.37991 * 124.15448 * 179.97438 * 18 16 15 20 20 S 1.72103 * 104.03428 * 179.97438 * 19 18 16 21 21 N 1.56413 * 96.15307 * 0.02562 * 20 19 18 22 22 N 1.27417 * 109.87731 * 0.02562 * 21 20 19 23 23 H 1.09002 * 109.46923 * 300.00253 * 1 2 3 24 24 H 1.08999 * 109.46940 * 59.99856 * 1 2 3 25 25 H 1.08999 * 109.46723 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46683 * 304.99545 * 4 2 1 27 27 H 1.08998 * 109.47627 * 64.99170 * 4 2 1 28 28 H 1.08997 * 109.46534 * 95.10330 * 6 5 4 29 29 H 1.08992 * 109.47054 * 215.10396 * 6 5 4 30 30 H 1.08996 * 109.46709 * 335.10713 * 6 5 4 31 31 H 0.97001 * 120.00247 * 180.02562 * 10 9 7 32 32 H 0.96993 * 120.00353 * 95.00441 * 15 2 1 33 33 H 1.07997 * 127.98004 * 359.94149 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2342 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5230 -2.8297 -0.4790 9 6 5.4005 -1.8454 -0.1645 10 7 5.9903 -0.6757 -0.0380 11 14 6.3334 -3.4110 0.2454 12 1 6.9259 -3.9732 -0.9948 13 1 7.4149 -3.1033 1.2153 14 1 5.4009 -4.4012 0.8415 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0182 2.3572 17 8 1.8583 1.1619 2.4116 18 6 2.6391 -0.7131 3.5609 19 6 2.8040 -0.1096 4.7908 20 16 3.3911 -1.3736 5.8005 21 7 3.3899 -2.4831 4.6980 22 7 2.9789 -1.9968 3.5944 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6054 -1.7198 -1.2951 27 1 1.7516 -0.1583 -2.1370 28 1 4.6152 0.9371 -0.9770 29 1 5.2330 -0.2043 -2.1950 30 1 3.7755 0.7586 -2.5363 31 1 6.9096 -0.6266 0.2676 32 1 2.2491 -1.6316 1.1526 33 1 2.6100 0.9186 5.0579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498347971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:50 Heat of formation + Delta-G solvation = 36.768375 kcal Electronic energy + Delta-G solvation = -19145.870613 eV Core-core repulsion = 16141.403374 eV Total energy + Delta-G solvation = -3004.467240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.06565 -40.34340 -38.04887 -35.77119 -33.47752 -32.95599 -31.54444 -28.08733 -28.00327 -27.37198 -25.17450 -23.40174 -21.93124 -21.43368 -20.28382 -18.67026 -17.76462 -17.16746 -17.00037 -16.83181 -16.33107 -15.76695 -15.46776 -15.16323 -14.84636 -14.48161 -13.91915 -13.61941 -13.40249 -13.13414 -13.06449 -12.84640 -12.73335 -12.55993 -12.15498 -11.98346 -11.97387 -11.69387 -11.34825 -11.15321 -11.11111 -10.86156 -10.59802 -9.91026 -8.78469 -7.79965 -5.23057 -0.91682 -0.01809 0.42623 0.57215 1.42938 1.45391 1.51236 2.09341 2.37194 2.51872 2.85748 3.36086 3.68067 3.72890 3.94946 4.16292 4.36954 4.44992 4.53714 4.77081 4.85752 4.91379 5.01273 5.17453 5.34979 5.40481 5.63866 5.66977 5.75445 6.32826 6.40411 6.70510 7.16703 7.20250 7.90660 8.33649 9.23313 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014325 B = 0.009116 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.151862 B = 3070.771417 C = 4452.663911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 H 0.051 0.949 4 C 0.139 3.861 5 N -0.611 5.611 6 C 0.178 3.822 7 C -0.241 4.241 8 H 0.075 0.925 9 C -0.041 4.041 10 N -0.932 5.932 11 Si 0.944 3.056 12 H -0.286 1.286 13 H -0.307 1.307 14 H -0.269 1.269 15 N -0.668 5.668 16 C 0.596 3.404 17 O -0.574 6.574 18 C -0.040 4.040 19 C -0.240 4.240 20 S 0.556 5.444 21 N -0.336 5.336 22 N -0.233 5.233 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.083 0.917 28 H -0.006 1.006 29 H 0.016 0.984 30 H 0.033 0.967 31 H 0.241 0.759 32 H 0.410 0.590 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.539 0.420 9.161 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.070 0.930 4 C 0.013 3.987 5 N -0.333 5.333 6 C 0.032 3.968 7 C -0.371 4.371 8 H 0.093 0.907 9 C -0.237 4.237 10 N -0.580 5.580 11 Si 0.774 3.226 12 H -0.213 1.213 13 H -0.234 1.234 14 H -0.194 1.194 15 N -0.316 5.316 16 C 0.378 3.622 17 O -0.455 6.455 18 C -0.188 4.188 19 C -0.397 4.397 20 S 0.691 5.309 21 N -0.317 5.317 22 N -0.102 5.102 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.246 0.754 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.977 -0.432 9.870 13.349 hybrid contribution 0.794 0.268 -0.604 1.033 sum -8.183 -0.164 9.266 12.363 Atomic orbital electron populations 1.22040 0.93178 1.02737 1.02577 1.21924 0.94579 0.96533 0.85987 0.93042 1.21436 0.83120 0.99508 0.94678 1.44149 1.00973 1.22017 1.66193 1.20517 0.92738 0.89870 0.93641 1.19351 0.95679 0.90712 1.31383 0.90717 1.25437 0.99712 0.97882 1.00630 1.70256 1.12270 1.23279 1.52172 0.85615 0.78646 0.81330 0.77023 1.21311 1.23419 1.19388 1.45747 1.62778 1.14721 1.08317 1.16904 0.77564 0.85375 0.82395 1.90716 1.53815 1.15506 1.85414 1.22707 1.07758 0.90760 0.97618 1.29221 1.03866 1.10471 0.96133 1.80773 1.41469 0.91139 1.17520 1.78303 1.23348 1.28571 1.01489 1.71586 1.11040 1.11339 1.16198 0.93764 0.89333 0.91348 0.91612 0.89919 0.98769 0.96468 0.94817 0.94985 0.75358 0.75423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.48 71.98 0.68 -3.38 16 2 C 0.12 4.27 2.88 44.99 0.13 4.40 16 3 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 4 C 0.14 5.11 5.36 86.38 0.46 5.57 16 5 N -0.61 -29.09 2.82 -726.94 -2.05 -31.14 16 6 C 0.18 8.73 9.02 127.77 1.15 9.88 16 7 C -0.24 -12.60 8.02 84.03 0.67 -11.93 16 8 H 0.08 3.78 7.86 -2.91 -0.02 3.75 16 9 C -0.04 -2.30 5.06 84.86 0.43 -1.87 16 10 N -0.93 -55.69 10.67 21.65 0.23 -55.46 16 11 Si 0.94 46.34 29.58 68.60 2.03 48.37 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 N -0.67 -27.14 4.48 -445.78 -2.00 -29.14 16 16 C 0.60 24.79 7.78 86.67 0.67 25.46 16 17 O -0.57 -25.56 16.46 -4.06 -0.07 -25.63 16 18 C -0.04 -1.48 6.87 41.36 0.28 -1.20 16 19 C -0.24 -6.38 11.21 67.76 0.76 -5.62 16 20 S 0.56 11.86 23.38 -56.49 -1.32 10.54 16 21 N -0.34 -11.05 12.49 37.02 0.46 -10.59 16 22 N -0.23 -8.95 11.24 -50.34 -0.57 -9.51 16 23 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.24 8.03 -2.38 -0.02 2.22 16 27 H 0.08 2.59 7.86 -2.39 -0.02 2.58 16 28 H -0.01 -0.34 7.40 -2.39 -0.02 -0.36 16 29 H 0.02 0.90 7.21 -2.39 -0.02 0.88 16 30 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 31 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.41 17.29 6.98 -92.71 -0.65 16.64 16 33 H 0.23 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -71.27 299.67 2.46 -68.82 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.49 Total: 12.41 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.25 Total: 21.32 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -3.92 Total: -135.83 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.63 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 11.86 SS G_CDS: -1.32 Total: 10.54 kcal Total: -71.27 2.46 -68.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498347971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.584 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds