Wall clock time and date at job start Mon Mar 30 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46806 * 2 1 4 4 C 1.52994 * 109.47251 * 120.00096 * 2 1 3 5 5 N 1.46494 * 109.47482 * 174.99965 * 4 2 1 6 6 C 1.46504 * 119.99835 * 270.00284 * 5 4 2 7 7 C 1.36936 * 120.00047 * 89.99580 * 5 4 2 8 8 H 1.07994 * 120.00155 * 339.79507 * 7 5 4 9 9 C 1.38816 * 119.99794 * 160.06630 * 7 5 4 10 10 N 1.31616 * 119.99959 * 344.56093 * 9 7 5 11 11 Si 1.86800 * 119.99678 * 164.56033 * 9 7 5 12 12 H 1.48496 * 109.47360 * 60.00433 * 11 9 7 13 13 H 1.48504 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47337 * 299.99836 * 11 9 7 15 15 N 1.46505 * 109.46758 * 240.00253 * 2 1 3 16 16 C 1.34773 * 119.99815 * 85.00430 * 15 2 1 17 17 O 1.21598 * 120.00597 * 359.97438 * 16 15 2 18 18 C 1.47455 * 119.99703 * 179.97438 * 16 15 2 19 19 C 1.37978 * 124.15739 * 179.72348 * 18 16 15 20 20 S 1.72098 * 104.03665 * 179.90242 * 19 18 16 21 21 N 1.56406 * 96.15179 * 0.32798 * 20 19 18 22 22 N 1.27421 * 109.87519 * 359.79764 * 21 20 19 23 23 H 1.09008 * 109.47025 * 59.99623 * 1 2 3 24 24 H 1.08996 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47322 * 300.00148 * 1 2 3 26 26 H 1.09004 * 109.46890 * 54.99563 * 4 2 1 27 27 H 1.08999 * 109.47374 * 295.00200 * 4 2 1 28 28 H 1.09002 * 109.46804 * 264.77606 * 6 5 4 29 29 H 1.08998 * 109.47476 * 24.78361 * 6 5 4 30 30 H 1.09001 * 109.46894 * 144.78189 * 6 5 4 31 31 H 0.97002 * 119.99705 * 179.97438 * 10 9 7 32 32 H 0.96992 * 119.99696 * 264.99481 * 15 2 1 33 33 H 1.08008 * 127.98068 * 359.96969 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1257 -1.9920 0.5611 7 6 4.2798 0.1648 1.7239 8 1 3.8655 1.1486 1.8879 9 6 5.6045 -0.0933 2.0487 10 7 6.0307 -1.3355 2.1359 11 14 6.7823 1.3224 2.3617 12 1 6.2861 2.1367 3.5001 13 1 8.1278 0.7844 2.6868 14 1 6.8697 2.1716 1.1466 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3571 17 8 1.8575 1.1616 -2.4119 18 6 2.6390 -0.7131 -3.5610 19 6 2.7983 -0.1111 -4.7923 20 16 3.3915 -1.3735 -5.8004 21 7 3.3899 -2.4831 -4.6981 22 7 2.9778 -1.9970 -3.5947 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6053 -1.7198 1.2951 27 1 1.7517 -0.1584 2.1369 28 1 4.3667 -2.7316 1.3247 29 1 3.4369 -2.4278 -0.1625 30 1 5.0394 -1.6837 0.0528 31 1 6.9565 -1.5159 2.3625 32 1 2.2490 -1.6317 -1.1527 33 1 2.5981 0.9156 -5.0611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498347972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:53 Heat of formation + Delta-G solvation = 62.673635 kcal Electronic energy + Delta-G solvation = -18779.453135 eV Core-core repulsion = 15776.109232 eV Total energy + Delta-G solvation = -3003.343903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03985 -39.09950 -36.46722 -34.13138 -32.29666 -31.22775 -30.22092 -27.08962 -26.17151 -25.62711 -23.98124 -21.66083 -20.72548 -20.22968 -19.04512 -16.91668 -16.52610 -16.00992 -15.81557 -15.22982 -14.99572 -14.34340 -13.83460 -13.68214 -13.29667 -12.86302 -12.66171 -12.28259 -12.09068 -11.99851 -11.46967 -11.31402 -10.80111 -10.66944 -10.61735 -10.40306 -10.18066 -10.11430 -10.06018 -9.97164 -9.85278 -9.82018 -8.71774 -8.46259 -6.76293 -5.70791 -3.14683 -0.00389 0.84374 1.46557 1.51835 3.32891 3.40784 3.46164 3.46806 3.48545 3.90317 4.51980 4.67423 4.94061 5.27278 5.35797 5.47128 5.61454 5.76970 5.92905 6.07872 6.16531 6.41043 6.49375 6.69626 6.76281 6.95134 7.38707 7.42679 7.71746 7.82991 7.89484 8.38917 8.44682 9.24238 9.87825 10.34800 11.34071 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.005924 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.092018 B = 4725.710281 C = 5387.394268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 H 0.088 0.912 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.167 3.833 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.907 5.907 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.679 5.679 16 C 0.600 3.400 17 O -0.537 6.537 18 C -0.013 4.013 19 C -0.238 4.238 20 S 0.441 5.559 21 N -0.288 5.288 22 N -0.205 5.205 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.030 0.970 29 H -0.004 1.004 30 H 0.041 0.959 31 H 0.252 0.748 32 H 0.407 0.593 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -0.277 -14.447 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.022 3.978 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.552 5.552 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.330 5.330 16 C 0.380 3.620 17 O -0.414 6.414 18 C -0.160 4.160 19 C -0.395 4.395 20 S 0.577 5.423 21 N -0.268 5.268 22 N -0.076 5.076 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.245 0.755 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.982 -1.208 -15.090 17.114 hybrid contribution 0.447 1.557 0.980 1.893 sum -7.535 0.349 -14.110 16.000 Atomic orbital electron populations 1.22132 0.96149 1.01553 1.01948 1.22095 0.92408 0.99053 0.85778 0.89413 1.21055 0.85976 0.97708 0.93891 1.43861 0.99042 1.22846 1.66334 1.20822 0.94303 0.88849 0.93781 1.19133 0.92868 0.90364 1.36004 0.91375 1.24930 0.98478 0.96062 1.00165 1.70077 1.15806 1.17028 1.52295 0.86370 0.80427 0.81866 0.78115 1.20878 1.21678 1.21221 1.45948 1.63864 1.14604 1.08536 1.16638 0.78205 0.85641 0.81519 1.90791 1.51578 1.14524 1.84493 1.22891 1.05822 0.90168 0.97149 1.28834 1.05125 1.08882 0.96649 1.81410 1.44951 0.94504 1.21453 1.78709 1.21860 1.25688 1.00570 1.71540 1.10173 1.10562 1.15288 0.92855 0.92836 0.91610 0.93895 0.91601 0.95137 0.98553 0.93984 0.93746 0.75475 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.16 0.35 -1.91 16 2 C 0.11 2.03 2.88 -67.93 -0.20 1.83 16 3 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 4 C 0.14 2.79 5.29 -4.05 -0.02 2.76 16 5 N -0.60 -14.73 2.78 -181.12 -0.50 -15.23 16 6 C 0.17 4.09 8.52 59.85 0.51 4.60 16 7 C -0.25 -6.99 9.67 -15.06 -0.15 -7.14 16 8 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 9 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 10 N -0.91 -26.69 10.67 55.49 0.59 -26.10 16 11 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 N -0.68 -12.13 4.52 -54.87 -0.25 -12.38 16 16 C 0.60 10.80 7.78 -12.51 -0.10 10.70 16 17 O -0.54 -10.71 16.46 5.28 0.09 -10.62 16 18 C -0.01 -0.20 6.87 -83.78 -0.58 -0.78 16 19 C -0.24 -2.75 11.21 30.64 0.34 -2.40 16 20 S 0.44 4.16 23.38 -107.50 -2.51 1.65 16 21 N -0.29 -4.00 12.49 60.35 0.75 -3.25 16 22 N -0.20 -3.26 11.24 32.74 0.37 -2.89 16 23 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 27 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 28 H 0.03 0.81 7.40 -51.93 -0.38 0.43 16 29 H 0.00 -0.08 5.76 -51.93 -0.30 -0.38 16 30 H 0.04 1.14 7.20 -51.93 -0.37 0.76 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.41 7.18 5.79 -40.82 -0.24 6.94 16 33 H 0.21 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -32.49 297.70 -5.69 -38.18 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.76 Total: 1.23 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 0.08 Total: 7.63 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.96 Total: -59.85 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.51 Total: 1.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.49 -5.69 -38.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498347972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.856 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds