Wall clock time and date at job start Mon Mar 30 2020 01:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46806 * 2 1 4 4 C 1.52994 * 109.47251 * 120.00096 * 2 1 3 5 5 N 1.46494 * 109.47482 * 174.99965 * 4 2 1 6 6 C 1.46504 * 119.99835 * 270.00284 * 5 4 2 7 7 C 1.36936 * 120.00047 * 89.99580 * 5 4 2 8 8 H 1.07994 * 120.00155 * 339.79507 * 7 5 4 9 9 C 1.38816 * 119.99794 * 160.06630 * 7 5 4 10 10 N 1.31616 * 119.99959 * 344.56093 * 9 7 5 11 11 Si 1.86800 * 119.99678 * 164.56033 * 9 7 5 12 12 H 1.48496 * 109.47360 * 60.00433 * 11 9 7 13 13 H 1.48504 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47337 * 299.99836 * 11 9 7 15 15 N 1.46505 * 109.46758 * 240.00253 * 2 1 3 16 16 C 1.34773 * 119.99815 * 85.00430 * 15 2 1 17 17 O 1.21598 * 120.00597 * 359.97438 * 16 15 2 18 18 C 1.47455 * 119.99703 * 179.97438 * 16 15 2 19 19 C 1.37978 * 124.15739 * 179.72348 * 18 16 15 20 20 S 1.72098 * 104.03665 * 179.90242 * 19 18 16 21 21 N 1.56406 * 96.15179 * 0.32798 * 20 19 18 22 22 N 1.27421 * 109.87519 * 359.79764 * 21 20 19 23 23 H 1.09008 * 109.47025 * 59.99623 * 1 2 3 24 24 H 1.08996 * 109.47318 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47322 * 300.00148 * 1 2 3 26 26 H 1.09004 * 109.46890 * 54.99563 * 4 2 1 27 27 H 1.08999 * 109.47374 * 295.00200 * 4 2 1 28 28 H 1.09002 * 109.46804 * 264.77606 * 6 5 4 29 29 H 1.08998 * 109.47476 * 24.78361 * 6 5 4 30 30 H 1.09001 * 109.46894 * 144.78189 * 6 5 4 31 31 H 0.97002 * 119.99705 * 179.97438 * 10 9 7 32 32 H 0.96992 * 119.99696 * 264.99481 * 15 2 1 33 33 H 1.08008 * 127.98068 * 359.96969 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1257 -1.9920 0.5611 7 6 4.2798 0.1648 1.7239 8 1 3.8655 1.1486 1.8879 9 6 5.6045 -0.0933 2.0487 10 7 6.0307 -1.3355 2.1359 11 14 6.7823 1.3224 2.3617 12 1 6.2861 2.1367 3.5001 13 1 8.1278 0.7844 2.6868 14 1 6.8697 2.1716 1.1466 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3571 17 8 1.8575 1.1616 -2.4119 18 6 2.6390 -0.7131 -3.5610 19 6 2.7983 -0.1111 -4.7923 20 16 3.3915 -1.3735 -5.8004 21 7 3.3899 -2.4831 -4.6981 22 7 2.9778 -1.9970 -3.5947 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6053 -1.7198 1.2951 27 1 1.7517 -0.1584 2.1369 28 1 4.3667 -2.7316 1.3247 29 1 3.4369 -2.4278 -0.1625 30 1 5.0394 -1.6837 0.0528 31 1 6.9565 -1.5159 2.3625 32 1 2.2490 -1.6317 -1.1527 33 1 2.5981 0.9156 -5.0611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498347972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:52 Heat of formation + Delta-G solvation = 39.104190 kcal Electronic energy + Delta-G solvation = -18780.475183 eV Core-core repulsion = 15776.109232 eV Total energy + Delta-G solvation = -3004.365951 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12499 -40.45231 -38.13424 -35.86919 -33.50520 -32.94909 -31.73489 -28.13976 -28.00765 -27.43778 -25.25718 -23.38367 -21.95492 -21.67073 -20.28002 -18.81502 -17.73984 -17.21239 -17.08234 -16.91603 -16.38268 -15.76904 -15.45806 -15.27823 -15.04443 -14.50825 -13.77203 -13.64076 -13.52572 -13.26668 -13.05718 -12.81165 -12.72795 -12.53236 -12.33052 -12.03595 -11.88098 -11.81116 -11.42071 -11.20678 -11.14916 -10.88908 -10.65283 -10.06484 -8.79342 -7.83525 -5.28752 -0.93268 -0.03930 0.35729 0.54962 1.42753 1.45655 1.51648 2.03552 2.20485 2.49369 2.78166 3.28630 3.63897 3.67490 3.85983 4.12769 4.35514 4.37374 4.47735 4.76202 4.76904 4.89948 4.99170 5.13304 5.28487 5.40798 5.53389 5.62349 5.70674 6.30027 6.30866 6.60120 7.07426 7.13961 7.86479 8.28154 9.19118 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.005924 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.092018 B = 4725.710281 C = 5387.394268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 H 0.058 0.942 4 C 0.141 3.859 5 N -0.613 5.613 6 C 0.186 3.814 7 C -0.258 4.258 8 H 0.069 0.931 9 C -0.053 4.053 10 N -0.937 5.937 11 Si 0.961 3.039 12 H -0.272 1.272 13 H -0.294 1.294 14 H -0.287 1.287 15 N -0.683 5.683 16 C 0.597 3.403 17 O -0.565 6.565 18 C -0.045 4.045 19 C -0.239 4.239 20 S 0.566 5.434 21 N -0.332 5.332 22 N -0.236 5.236 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.005 0.995 29 H 0.030 0.970 30 H 0.007 0.993 31 H 0.247 0.753 32 H 0.408 0.592 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 0.211 -16.065 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.076 0.924 4 C 0.014 3.986 5 N -0.336 5.336 6 C 0.041 3.959 7 C -0.388 4.388 8 H 0.087 0.913 9 C -0.248 4.248 10 N -0.584 5.584 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.220 1.220 14 H -0.214 1.214 15 N -0.333 5.333 16 C 0.379 3.621 17 O -0.444 6.444 18 C -0.193 4.193 19 C -0.396 4.396 20 S 0.701 5.299 21 N -0.313 5.313 22 N -0.105 5.105 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.245 0.755 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.897 -0.722 -16.702 18.938 hybrid contribution 0.683 1.417 1.288 2.033 sum -8.213 0.695 -15.415 17.480 Atomic orbital electron populations 1.22022 0.92971 1.02926 1.02629 1.21855 0.94732 0.96893 0.85035 0.92414 1.21261 0.83139 0.99247 0.94945 1.44050 1.01053 1.22208 1.66252 1.20490 0.93796 0.88299 0.93280 1.19439 0.93463 0.91108 1.34809 0.91327 1.25639 1.00029 0.98101 1.01041 1.70230 1.15590 1.18628 1.53918 0.85432 0.78331 0.79277 0.78001 1.19726 1.21979 1.21420 1.45971 1.64044 1.14545 1.08729 1.16951 0.77552 0.85438 0.82190 1.90758 1.52892 1.15590 1.85145 1.22628 1.08341 0.90882 0.97434 1.29256 1.03566 1.10650 0.96085 1.80947 1.40775 0.90854 1.17298 1.78294 1.23102 1.28390 1.01517 1.71576 1.11429 1.10886 1.16646 0.93246 0.91083 0.89841 0.91698 0.91151 0.97704 0.95210 0.97432 0.94385 0.75455 0.75446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 2 C 0.12 4.26 2.88 44.99 0.13 4.39 16 3 H 0.06 2.38 7.58 -2.38 -0.02 2.36 16 4 C 0.14 5.39 5.29 86.38 0.46 5.84 16 5 N -0.61 -30.32 2.78 -726.95 -2.02 -32.34 16 6 C 0.19 9.28 8.52 127.77 1.09 10.37 16 7 C -0.26 -14.31 9.67 84.03 0.81 -13.49 16 8 H 0.07 3.72 7.87 -2.91 -0.02 3.70 16 9 C -0.05 -3.04 5.06 84.86 0.43 -2.61 16 10 N -0.94 -56.38 10.67 21.65 0.23 -56.15 16 11 Si 0.96 46.44 29.58 68.60 2.03 48.47 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 N -0.68 -24.24 4.52 -445.78 -2.01 -26.25 16 16 C 0.60 21.44 7.78 86.67 0.67 22.12 16 17 O -0.56 -22.55 16.46 -4.02 -0.07 -22.61 16 18 C -0.04 -1.36 6.87 41.36 0.28 -1.07 16 19 C -0.24 -5.00 11.21 67.76 0.76 -4.24 16 20 S 0.57 8.94 23.38 -56.49 -1.32 7.62 16 21 N -0.33 -8.73 12.49 37.02 0.46 -8.26 16 22 N -0.24 -7.36 11.24 -50.34 -0.57 -7.93 16 23 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 2.21 8.07 -2.38 -0.02 2.19 16 27 H 0.07 2.62 8.04 -2.39 -0.02 2.61 16 28 H 0.00 0.26 7.40 -2.39 -0.02 0.24 16 29 H 0.03 1.25 5.76 -2.39 -0.01 1.24 16 30 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 31 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.41 14.25 5.79 -92.71 -0.54 13.71 16 33 H 0.23 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -71.88 297.70 2.65 -69.23 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.60 Total: 10.16 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 5.32 Total: 18.07 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -3.91 Total: -130.94 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.07 Total: -22.61 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -1.32 Total: 7.62 kcal Total: -71.88 2.65 -69.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498347972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.331 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds