Wall clock time and date at job start Mon Mar 30 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47335 * 2 1 4 4 C 1.53004 * 109.47180 * 120.00456 * 2 1 3 5 5 N 1.46498 * 109.46988 * 175.00077 * 4 2 1 6 6 C 1.46506 * 119.99733 * 269.99530 * 5 4 2 7 7 C 1.34766 * 120.00254 * 89.99865 * 5 4 2 8 8 O 1.21626 * 120.00057 * 1.42082 * 7 5 4 9 9 C 1.47170 * 120.00410 * 181.42116 * 7 5 4 10 10 C 1.38248 * 128.48201 * 172.38441 * 9 7 5 11 11 N 1.31239 * 111.89006 * 179.73443 * 10 9 7 12 12 N 1.27339 * 120.04065 * 0.24625 * 11 10 9 13 13 S 1.56642 * 109.73801 * 359.97438 * 12 11 10 14 14 N 1.46500 * 109.46787 * 239.99735 * 2 1 3 15 15 C 1.36940 * 119.99596 * 85.00214 * 14 2 1 16 16 H 1.08004 * 120.00331 * 0.02562 * 15 14 2 17 17 C 1.38813 * 119.99957 * 179.97438 * 15 14 2 18 18 N 1.31621 * 120.00003 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99784 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47010 * 90.00510 * 19 17 15 21 21 H 1.48504 * 109.46782 * 209.99996 * 19 17 15 22 22 H 1.48488 * 109.47325 * 330.00347 * 19 17 15 23 23 H 1.08992 * 109.47174 * 59.99831 * 1 2 3 24 24 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46809 * 299.99504 * 1 2 3 26 26 H 1.09001 * 109.47108 * 54.99579 * 4 2 1 27 27 H 1.09004 * 109.46700 * 294.99645 * 4 2 1 28 28 H 1.08997 * 109.47015 * 263.72675 * 6 5 4 29 29 H 1.09002 * 109.47116 * 23.72783 * 6 5 4 30 30 H 1.09001 * 109.46886 * 143.72332 * 6 5 4 31 31 H 1.08003 * 124.04990 * 0.02562 * 10 9 7 32 32 H 0.96999 * 120.00863 * 264.99992 * 14 2 1 33 33 H 0.97004 * 119.99514 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9921 0.5611 7 6 4.2676 0.1490 1.7155 8 8 3.7484 1.1041 2.2610 9 6 5.7340 0.0587 1.6288 10 6 6.6763 1.0103 1.9720 11 7 7.9001 0.5832 1.7668 12 7 8.0978 -0.5844 1.2986 13 16 6.7240 -1.2972 1.0575 14 7 2.0183 -0.6907 -1.1962 15 6 2.1491 -0.0075 -2.3758 16 1 1.8926 1.0405 -2.4242 17 6 2.6122 -0.6617 -3.5091 18 7 2.9252 -1.9388 -3.4500 19 14 2.7899 0.2701 -5.1183 20 1 4.1518 0.8560 -5.2033 21 1 2.5801 -0.6617 -6.2555 22 1 1.7792 1.3564 -5.1755 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.6054 -1.7199 1.2951 27 1 1.7517 -0.1584 2.1370 28 1 4.3838 -2.7237 1.3267 29 1 3.4299 -2.4390 -0.1488 30 1 5.0294 -1.6806 0.0369 31 1 6.4343 1.9862 2.3663 32 1 2.2490 -1.6318 -1.1527 33 1 3.2485 -2.3960 -4.2421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507052650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:58 Heat of formation + Delta-G solvation = 62.315583 kcal Electronic energy + Delta-G solvation = -18833.325052 eV Core-core repulsion = 15829.965622 eV Total energy + Delta-G solvation = -3003.359430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70887 -39.63215 -36.49031 -34.49766 -32.43288 -31.72946 -29.02045 -27.80314 -27.17229 -25.52515 -23.77057 -22.47372 -20.28011 -19.67664 -18.85228 -17.42063 -16.93548 -16.23912 -15.98030 -15.10670 -14.98976 -14.60244 -14.05180 -13.63109 -13.50270 -12.99076 -12.63156 -12.50055 -12.31089 -12.14244 -11.78168 -11.60185 -11.38762 -10.92213 -10.78980 -10.51380 -10.16581 -10.06410 -10.00363 -9.90356 -9.71674 -9.59094 -9.02248 -8.44652 -7.05395 -5.87231 -3.14300 -0.18101 0.86806 1.58398 2.05094 2.93789 3.17681 3.37824 3.44552 3.44996 4.07485 4.50121 4.52904 4.78479 5.17093 5.33080 5.38425 5.47868 5.57518 5.60859 5.73439 5.94760 6.05406 6.15733 6.19784 6.55293 6.58320 6.76716 7.02398 7.37194 7.64483 7.71626 8.12412 8.32619 9.44045 9.97851 10.33533 11.35618 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.006903 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.549339 B = 4054.960054 C = 4958.781571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.054 0.946 4 C 0.111 3.889 5 N -0.582 5.582 6 C 0.071 3.929 7 C 0.599 3.401 8 O -0.528 6.528 9 C -0.281 4.281 10 C 0.064 3.936 11 N -0.257 5.257 12 N -0.293 5.293 13 S 0.452 5.548 14 N -0.721 5.721 15 C -0.234 4.234 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.935 5.935 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.282 1.282 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.212 0.788 32 H 0.380 0.620 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -1.760 11.259 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.012 4.012 5 N -0.313 5.313 6 C -0.075 4.075 7 C 0.384 3.616 8 O -0.406 6.406 9 C -0.422 4.422 10 C -0.103 4.103 11 N -0.121 5.121 12 N -0.273 5.273 13 S 0.589 5.411 14 N -0.364 5.364 15 C -0.365 4.365 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.584 5.584 19 Si 0.735 3.265 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.208 1.208 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.215 0.785 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.024 -2.336 10.889 11.841 hybrid contribution -0.709 1.263 -0.784 1.646 sum 3.316 -1.073 10.105 10.689 Atomic orbital electron populations 1.22359 0.98447 1.00976 1.00469 1.20689 0.92260 0.96371 0.86495 0.92844 1.22000 0.77201 1.01914 1.00041 1.47447 1.07334 1.20658 1.55839 1.22177 0.99553 0.87580 0.98164 1.16488 0.82994 0.82915 0.79217 1.90806 1.73114 1.31734 1.44913 1.28075 1.00897 1.00494 1.12761 1.24390 0.85387 1.01930 0.98566 1.70806 1.21705 1.06098 1.13532 1.78561 1.24791 1.06534 1.17383 1.83160 0.93597 1.20289 1.44060 1.42456 1.78300 1.10348 1.05323 1.19228 1.36131 0.93873 0.87242 0.91313 1.24663 1.02239 0.95987 0.97891 1.69612 1.51295 1.08509 1.28985 0.86241 0.77810 0.78692 0.83787 1.21841 1.21744 1.20802 0.92422 0.93359 0.94172 0.90193 0.89477 0.92041 0.87213 0.91672 0.77153 0.78457 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.15 2.85 3.20 -67.93 -0.22 2.63 16 3 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 4 C 0.11 1.69 5.03 -4.04 -0.02 1.67 16 5 N -0.58 -8.98 2.73 -182.94 -0.50 -9.48 16 6 C 0.07 0.97 8.60 59.85 0.51 1.49 16 7 C 0.60 9.83 7.67 -12.64 -0.10 9.73 16 8 O -0.53 -9.83 16.56 5.25 0.09 -9.74 16 9 C -0.28 -4.11 6.50 -35.95 -0.23 -4.34 16 10 C 0.06 0.89 11.56 -17.80 -0.21 0.69 16 11 N -0.26 -3.90 11.54 30.36 0.35 -3.55 16 12 N -0.29 -4.36 12.51 60.35 0.75 -3.61 16 13 S 0.45 5.77 19.06 -107.50 -2.05 3.72 16 14 N -0.72 -16.26 4.57 -53.42 -0.24 -16.50 16 15 C -0.23 -6.11 9.93 -15.06 -0.15 -6.26 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.94 -25.93 13.06 55.49 0.72 -25.20 16 19 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 27 H 0.09 1.26 7.40 -51.93 -0.38 0.88 16 28 H 0.06 0.62 7.99 -51.93 -0.42 0.21 16 29 H 0.11 1.70 5.80 -51.93 -0.30 1.39 16 30 H 0.07 0.94 4.57 -25.25 -0.12 0.82 16 31 H 0.21 2.42 8.06 -52.48 -0.42 2.00 16 32 H 0.38 8.68 5.42 -40.82 -0.22 8.46 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -30.66 294.31 -5.13 -35.78 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.51 Total: 4.56 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.15 Total: 2.82 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 1.09 Total: -58.34 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -2.05 Total: 3.72 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.66 -5.13 -35.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507052650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.100 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds