Wall clock time and date at job start Mon Mar 30 2020 01:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47335 * 2 1 4 4 C 1.53004 * 109.47180 * 120.00456 * 2 1 3 5 5 N 1.46498 * 109.46988 * 175.00077 * 4 2 1 6 6 C 1.46506 * 119.99733 * 269.99530 * 5 4 2 7 7 C 1.34766 * 120.00254 * 89.99865 * 5 4 2 8 8 O 1.21626 * 120.00057 * 1.42082 * 7 5 4 9 9 C 1.47170 * 120.00410 * 181.42116 * 7 5 4 10 10 C 1.38248 * 128.48201 * 172.38441 * 9 7 5 11 11 N 1.31239 * 111.89006 * 179.73443 * 10 9 7 12 12 N 1.27339 * 120.04065 * 0.24625 * 11 10 9 13 13 S 1.56642 * 109.73801 * 359.97438 * 12 11 10 14 14 N 1.46500 * 109.46787 * 239.99735 * 2 1 3 15 15 C 1.36940 * 119.99596 * 85.00214 * 14 2 1 16 16 H 1.08004 * 120.00331 * 0.02562 * 15 14 2 17 17 C 1.38813 * 119.99957 * 179.97438 * 15 14 2 18 18 N 1.31621 * 120.00003 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99784 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47010 * 90.00510 * 19 17 15 21 21 H 1.48504 * 109.46782 * 209.99996 * 19 17 15 22 22 H 1.48488 * 109.47325 * 330.00347 * 19 17 15 23 23 H 1.08992 * 109.47174 * 59.99831 * 1 2 3 24 24 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46809 * 299.99504 * 1 2 3 26 26 H 1.09001 * 109.47108 * 54.99579 * 4 2 1 27 27 H 1.09004 * 109.46700 * 294.99645 * 4 2 1 28 28 H 1.08997 * 109.47015 * 263.72675 * 6 5 4 29 29 H 1.09002 * 109.47116 * 23.72783 * 6 5 4 30 30 H 1.09001 * 109.46886 * 143.72332 * 6 5 4 31 31 H 1.08003 * 124.04990 * 0.02562 * 10 9 7 32 32 H 0.96999 * 120.00863 * 264.99992 * 14 2 1 33 33 H 0.97004 * 119.99514 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9921 0.5611 7 6 4.2676 0.1490 1.7155 8 8 3.7484 1.1041 2.2610 9 6 5.7340 0.0587 1.6288 10 6 6.6763 1.0103 1.9720 11 7 7.9001 0.5832 1.7668 12 7 8.0978 -0.5844 1.2986 13 16 6.7240 -1.2972 1.0575 14 7 2.0183 -0.6907 -1.1962 15 6 2.1491 -0.0075 -2.3758 16 1 1.8926 1.0405 -2.4242 17 6 2.6122 -0.6617 -3.5091 18 7 2.9252 -1.9388 -3.4500 19 14 2.7899 0.2701 -5.1183 20 1 4.1518 0.8560 -5.2033 21 1 2.5801 -0.6617 -6.2555 22 1 1.7792 1.3564 -5.1755 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.6054 -1.7199 1.2951 27 1 1.7517 -0.1584 2.1370 28 1 4.3838 -2.7237 1.3267 29 1 3.4299 -2.4390 -0.1488 30 1 5.0294 -1.6806 0.0369 31 1 6.4343 1.9862 2.3663 32 1 2.2490 -1.6318 -1.1527 33 1 3.2485 -2.3960 -4.2421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507052650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:57 Heat of formation + Delta-G solvation = 41.165446 kcal Electronic energy + Delta-G solvation = -18834.242190 eV Core-core repulsion = 15829.965622 eV Total energy + Delta-G solvation = -3004.276568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83667 -40.88252 -37.95157 -35.97831 -34.09986 -33.01326 -30.73301 -29.00059 -28.38643 -26.79589 -25.61492 -23.69053 -21.72698 -20.83879 -20.03102 -19.28940 -18.17115 -17.49993 -17.16266 -16.66038 -16.19896 -16.09693 -15.60597 -15.13018 -15.00964 -14.17713 -13.89604 -13.78229 -13.74465 -13.54113 -13.11268 -12.92312 -12.80395 -12.77010 -12.49171 -12.18257 -11.90886 -11.64369 -11.29631 -11.14538 -11.01903 -10.95414 -10.69287 -9.71838 -8.93916 -7.92521 -5.16642 -1.30235 -0.20900 0.49609 0.92216 1.45081 1.47755 1.53631 1.72849 1.98051 2.56352 2.97805 3.37418 3.42426 3.69713 3.87348 4.04170 4.12403 4.39424 4.48937 4.58429 4.68634 4.73457 4.82124 4.90541 5.14139 5.29490 5.30569 5.55201 5.63116 6.15322 6.32369 6.61720 6.88124 7.39875 8.12030 8.40707 9.29644 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.006903 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.549339 B = 4054.960054 C = 4958.781571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.025 0.975 4 C 0.117 3.883 5 N -0.584 5.584 6 C 0.069 3.931 7 C 0.596 3.404 8 O -0.557 6.557 9 C -0.306 4.306 10 C 0.070 3.930 11 N -0.277 5.277 12 N -0.317 5.317 13 S 0.519 5.481 14 N -0.725 5.725 15 C -0.233 4.233 16 H 0.060 0.940 17 C -0.060 4.060 18 N -0.955 5.955 19 Si 0.952 3.048 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.279 1.279 23 H 0.033 0.967 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.229 0.771 32 H 0.379 0.621 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -2.397 12.021 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.043 0.957 4 C -0.006 4.006 5 N -0.314 5.314 6 C -0.076 4.076 7 C 0.383 3.617 8 O -0.437 6.437 9 C -0.447 4.447 10 C -0.098 4.098 11 N -0.140 5.140 12 N -0.297 5.297 13 S 0.655 5.345 14 N -0.368 5.368 15 C -0.365 4.365 16 H 0.078 0.922 17 C -0.254 4.254 18 N -0.606 5.606 19 Si 0.783 3.217 20 H -0.222 1.222 21 H -0.220 1.220 22 H -0.204 1.204 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.215 0.785 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.796 -2.973 11.669 12.626 hybrid contribution -0.670 1.447 -0.998 1.881 sum 3.126 -1.526 10.670 11.223 Atomic orbital electron populations 1.22208 0.96599 1.01695 1.00782 1.20834 0.93499 0.94996 0.86708 0.95668 1.21971 0.77236 1.03104 0.98281 1.47556 1.07494 1.20914 1.55414 1.22295 0.98586 0.87673 0.99082 1.16680 0.83659 0.82578 0.78832 1.90781 1.73847 1.32768 1.46316 1.28016 1.00364 1.02041 1.14303 1.24695 0.84907 1.02507 0.97685 1.70852 1.22282 1.06413 1.14437 1.78386 1.26430 1.06961 1.17953 1.82864 0.91645 1.18305 1.41682 1.42517 1.78476 1.10306 1.05492 1.19404 1.34787 0.93653 0.88639 0.92245 1.25194 1.03243 0.96803 1.00139 1.69703 1.52489 1.09221 1.29141 0.85459 0.77383 0.77715 0.81106 1.22234 1.22021 1.20440 0.94734 0.92381 0.91241 0.87482 0.88389 0.87848 0.88723 0.92555 0.75496 0.78542 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.49 71.98 0.68 -4.16 16 2 C 0.15 5.41 3.20 44.99 0.14 5.56 16 3 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 4 C 0.12 3.29 5.03 86.38 0.43 3.72 16 5 N -0.58 -16.98 2.73 -850.96 -2.32 -19.31 16 6 C 0.07 1.74 8.60 127.77 1.10 2.84 16 7 C 0.60 18.87 7.67 86.59 0.66 19.53 16 8 O -0.56 -20.34 16.56 -4.11 -0.07 -20.41 16 9 C -0.31 -8.56 6.50 24.62 0.16 -8.40 16 10 C 0.07 1.87 11.56 84.78 0.98 2.85 16 11 N -0.28 -8.13 11.54 -57.86 -0.67 -8.79 16 12 N -0.32 -9.05 12.51 37.02 0.46 -8.59 16 13 S 0.52 12.28 19.06 -56.49 -1.08 11.20 16 14 N -0.72 -32.23 4.57 -322.93 -1.47 -33.71 16 15 C -0.23 -12.15 9.93 84.03 0.83 -11.31 16 16 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 17 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 18 N -0.95 -52.68 13.06 21.65 0.28 -52.39 16 19 Si 0.95 44.73 29.55 68.60 2.03 46.76 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.11 2.46 8.07 -2.39 -0.02 2.45 16 27 H 0.10 2.60 7.40 -2.38 -0.02 2.58 16 28 H 0.10 1.73 7.99 -2.39 -0.02 1.71 16 29 H 0.09 2.76 5.80 -2.39 -0.01 2.75 16 30 H 0.06 1.53 4.57 -19.35 -0.09 1.44 16 31 H 0.23 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.38 17.00 5.42 -92.71 -0.50 16.50 16 33 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -64.81 294.31 3.19 -61.61 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.57 Total: 15.77 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.47 Total: 7.85 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -3.72 Total: -122.79 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.41 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 12.28 SS G_CDS: -1.08 Total: 11.20 kcal Total: -64.81 3.19 -61.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507052650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.776 kcal (2) G-P(sol) polarization free energy of solvation -64.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds