Wall clock time and date at job start Mon Mar 30 2020 00:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99785 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47141 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47162 * 120.00342 * 8 6 4 11 11 H 1.48501 * 109.47494 * 240.00320 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 2 15 15 O 1.21715 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.46554 * 120.00294 * 179.97438 * 14 13 12 17 17 C 1.37932 * 126.23325 * 179.97438 * 16 14 13 18 18 C 1.39743 * 107.12089 * 179.97438 * 17 16 14 19 19 C 1.35667 * 107.89089 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 125.57761 * 180.02562 * 19 18 17 21 21 N 1.35579 * 108.83960 * 359.76812 * 19 18 17 22 22 H 0.97000 * 125.69038 * 180.22568 * 21 19 18 23 23 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 28 28 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 29 29 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 32 32 H 0.97010 * 119.99909 * 359.97438 * 13 12 2 33 33 H 1.08001 * 126.43896 * 359.96127 * 17 16 14 34 34 H 1.08003 * 126.05591 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5774 -1.4804 3.7812 16 6 1.3896 0.2004 4.8661 17 6 1.6424 -0.1569 6.1741 18 6 0.9876 0.7713 6.9881 19 6 0.3589 1.6626 6.1814 20 17 -0.5927 3.0126 6.7160 21 7 0.6000 1.3298 4.8894 22 1 0.2697 1.8055 4.1113 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 0.9943 0.7583 2.3564 33 1 2.2349 -0.9964 6.5067 34 1 0.9835 0.7784 8.0681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520231685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:35 Heat of formation + Delta-G solvation = -8.876840 kcal Electronic energy + Delta-G solvation = -18293.116362 eV Core-core repulsion = 15252.333340 eV Total energy + Delta-G solvation = -3040.783022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41172 -38.92517 -36.93216 -36.42239 -33.48879 -31.50037 -30.89504 -29.15200 -25.83181 -25.77233 -25.05543 -22.43300 -20.81804 -20.25589 -19.21151 -18.63963 -16.38603 -15.78469 -15.35584 -15.18382 -14.68275 -14.31466 -14.15809 -13.69215 -13.14123 -12.99100 -12.86833 -12.76186 -12.28799 -11.92501 -11.49564 -11.48131 -11.28984 -10.94503 -10.71876 -10.48775 -10.27900 -9.89924 -9.73881 -9.39850 -9.30265 -8.87197 -8.66711 -8.44580 -8.22661 -6.08762 -4.18914 1.30504 1.41807 2.43583 3.06441 3.23629 3.32503 3.36528 3.53007 3.54404 4.35376 4.93479 5.04904 5.15993 5.18503 5.72665 5.90920 6.09087 6.22638 6.34535 6.40995 6.59246 6.64911 6.69348 6.81268 6.85269 6.91840 6.96803 7.25284 7.45769 7.62409 7.85861 7.91601 8.05510 8.29654 8.47065 8.81909 9.47503 10.92876 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033408 B = 0.004011 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.914074 B = 6979.031755 C = 7625.889706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.578 3.422 15 O -0.533 6.533 16 C -0.021 4.021 17 C -0.108 4.108 18 C -0.177 4.177 19 C 0.080 3.920 20 Cl -0.020 7.020 21 N -0.531 5.531 22 H 0.421 0.579 23 H 0.002 0.998 24 H 0.087 0.913 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.002 0.998 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.392 0.608 33 H 0.157 0.843 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 4.377 15.302 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.364 5.364 14 C 0.363 3.637 15 O -0.411 6.411 16 C -0.135 4.135 17 C -0.134 4.134 18 C -0.203 4.203 19 C -0.062 4.062 20 Cl 0.008 6.992 21 N -0.131 5.131 22 H 0.260 0.740 23 H 0.021 0.979 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.021 0.979 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.175 0.825 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.766 3.942 15.075 15.825 hybrid contribution -0.333 0.475 -1.240 1.369 sum -3.099 4.417 13.835 14.850 Atomic orbital electron populations 1.21839 0.97751 0.99308 0.99941 1.18384 0.92798 0.92780 0.90631 1.21840 0.98758 0.98307 0.99942 1.21004 1.31525 1.12163 0.89753 0.92242 1.24883 0.94796 0.94902 0.98927 1.69804 1.36696 1.22760 1.23221 0.86496 0.78666 0.79761 0.82864 1.19690 1.21034 1.21029 1.21811 0.98447 0.95925 0.82897 1.46257 1.52427 1.31536 1.06161 1.16996 0.80818 0.84001 0.81882 1.90837 1.38389 1.25679 1.86174 1.20815 1.04037 0.92113 0.96553 1.21277 1.01836 1.00636 0.89665 1.20648 1.03508 0.96517 0.99647 1.20996 1.04505 0.95754 0.84982 1.98398 1.70149 1.42573 1.88046 1.42083 1.40651 1.23474 1.06899 0.74019 0.97872 0.89461 0.95252 0.95252 0.89459 0.97869 0.93007 0.92241 0.92241 0.77359 0.82514 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.05 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.10 9.35 55.43 0.52 -22.58 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 13 N -0.71 -12.29 4.95 -61.66 -0.31 -12.59 16 14 C 0.58 10.01 7.78 -12.91 -0.10 9.91 16 15 O -0.53 -11.00 16.88 5.18 0.09 -10.91 16 16 C -0.02 -0.30 7.06 -81.93 -0.58 -0.88 16 17 C -0.11 -1.38 10.65 -39.13 -0.42 -1.79 16 18 C -0.18 -1.92 10.78 -39.94 -0.43 -2.35 16 19 C 0.08 0.88 7.74 -16.82 -0.13 0.75 16 20 Cl -0.02 -0.19 29.30 -51.86 -1.52 -1.71 16 21 N -0.53 -6.15 6.00 -6.54 -0.04 -6.19 16 22 H 0.42 4.13 8.19 -40.82 -0.33 3.79 16 23 H 0.00 0.04 6.86 -51.93 -0.36 -0.31 16 24 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 28 H 0.00 0.04 6.86 -51.93 -0.36 -0.31 16 29 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.39 5.97 5.29 -40.82 -0.22 5.75 16 33 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -27.78 299.76 -7.25 -35.03 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.97 Total: 6.31 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.52 Total: -7.23 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.17 Total: -41.36 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.78 -7.25 -35.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520231685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.157 kcal (2) G-P(sol) polarization free energy of solvation -27.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds