Wall clock time and date at job start Mon Mar 30 2020 00:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99785 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47141 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47162 * 120.00342 * 8 6 4 11 11 H 1.48501 * 109.47494 * 240.00320 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 2 15 15 O 1.21715 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.46554 * 120.00294 * 179.97438 * 14 13 12 17 17 C 1.37932 * 126.23325 * 179.97438 * 16 14 13 18 18 C 1.39743 * 107.12089 * 179.97438 * 17 16 14 19 19 C 1.35667 * 107.89089 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 125.57761 * 180.02562 * 19 18 17 21 21 N 1.35579 * 108.83960 * 359.76812 * 19 18 17 22 22 H 0.97000 * 125.69038 * 180.22568 * 21 19 18 23 23 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 28 28 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 29 29 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 32 32 H 0.97010 * 119.99909 * 359.97438 * 13 12 2 33 33 H 1.08001 * 126.43896 * 359.96127 * 17 16 14 34 34 H 1.08003 * 126.05591 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5774 -1.4804 3.7812 16 6 1.3896 0.2004 4.8661 17 6 1.6424 -0.1569 6.1741 18 6 0.9876 0.7713 6.9881 19 6 0.3589 1.6626 6.1814 20 17 -0.5927 3.0126 6.7160 21 7 0.6000 1.3298 4.8894 22 1 0.2697 1.8055 4.1113 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 0.9943 0.7583 2.3564 33 1 2.2349 -0.9964 6.5067 34 1 0.9835 0.7784 8.0681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520231685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:35 Heat of formation + Delta-G solvation = -25.592254 kcal Electronic energy + Delta-G solvation = -18293.841197 eV Core-core repulsion = 15252.333340 eV Total energy + Delta-G solvation = -3041.507857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.40716 -40.33034 -38.14896 -37.71956 -35.13513 -32.96063 -32.18166 -30.26480 -27.61013 -27.50631 -26.79941 -23.68850 -21.77283 -21.32506 -20.72007 -20.13038 -17.94767 -17.31347 -16.74796 -16.59263 -16.40164 -15.52713 -15.14934 -15.07034 -14.75488 -14.47171 -14.09352 -14.03316 -13.71026 -13.24992 -13.14184 -12.78119 -12.69010 -12.58953 -12.29431 -12.29039 -12.15568 -11.53114 -11.43874 -11.12581 -10.73134 -10.42709 -10.21543 -10.11788 -9.23825 -8.04452 -6.19873 0.23646 0.55081 1.40994 1.45752 1.50222 1.54702 2.09867 2.22876 2.28102 2.47142 3.19843 3.78553 4.12487 4.22151 4.39612 4.47585 4.66293 4.78480 4.94902 4.99218 5.02940 5.08880 5.14985 5.25550 5.40735 5.50023 5.63009 5.66039 5.68254 6.06586 6.11413 6.17335 6.40503 6.52316 6.84020 7.10454 7.48232 8.94761 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033408 B = 0.004011 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.914074 B = 6979.031755 C = 7625.889706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.147 3.853 13 N -0.708 5.708 14 C 0.581 3.419 15 O -0.573 6.573 16 C -0.048 4.048 17 C -0.105 4.105 18 C -0.176 4.176 19 C 0.089 3.911 20 Cl 0.000 7.000 21 N -0.525 5.525 22 H 0.429 0.571 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.403 0.597 33 H 0.161 0.839 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 5.394 16.854 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.023 3.977 13 N -0.358 5.358 14 C 0.369 3.631 15 O -0.454 6.454 16 C -0.162 4.162 17 C -0.131 4.131 18 C -0.201 4.201 19 C -0.055 4.055 20 Cl 0.029 6.971 21 N -0.126 5.126 22 H 0.269 0.731 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.240 0.760 33 H 0.178 0.822 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.504 4.990 16.624 17.707 hybrid contribution -0.152 0.218 -1.621 1.642 sum -3.656 5.208 15.003 16.297 Atomic orbital electron populations 1.21680 0.97088 0.98809 1.00319 1.18381 0.93275 0.93065 0.90335 1.21681 0.98092 0.97806 1.00323 1.21288 1.31684 1.12195 0.91437 0.93554 1.25436 0.95112 0.95569 1.00958 1.69904 1.37039 1.23284 1.23567 0.85706 0.78119 0.78752 0.80231 1.19942 1.20792 1.20785 1.21372 0.97431 0.95274 0.83587 1.46017 1.52655 1.31735 1.05386 1.17327 0.79887 0.83466 0.82431 1.90810 1.40229 1.27541 1.86784 1.20279 1.06605 0.93828 0.95467 1.21517 1.01289 1.00848 0.89473 1.20960 1.02675 0.95595 1.00905 1.21244 1.03663 0.95894 0.84663 1.98416 1.69510 1.41468 1.87739 1.42007 1.40148 1.22781 1.07634 0.73128 0.94673 0.91779 0.96143 0.96145 0.91779 0.94663 0.93035 0.93712 0.93710 0.76041 0.82184 0.80263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 2 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -27.33 8.01 25.60 0.21 -27.12 16 5 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -46.99 9.35 21.45 0.20 -46.79 16 8 Si 0.94 42.00 29.54 68.60 2.03 44.02 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.07 4.50 86.38 0.39 6.46 16 13 N -0.71 -23.79 4.95 -467.20 -2.31 -26.10 16 14 C 0.58 19.84 7.78 86.41 0.67 20.52 16 15 O -0.57 -23.88 16.88 -4.40 -0.07 -23.96 16 16 C -0.05 -1.29 7.06 40.30 0.28 -1.01 16 17 C -0.10 -2.47 10.65 22.56 0.24 -2.23 16 18 C -0.18 -3.28 10.78 22.04 0.24 -3.04 16 19 C 0.09 1.68 7.74 83.52 0.65 2.32 16 20 Cl 0.00 0.00 29.30 -2.72 -0.08 -0.08 16 21 N -0.52 -10.90 6.00 -174.61 -1.05 -11.95 16 22 H 0.43 7.29 8.19 -92.71 -0.76 6.53 16 23 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 24 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 28 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 29 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.40 11.53 5.29 -92.70 -0.49 11.04 16 33 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -59.36 299.76 2.85 -56.51 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.11 Total: 17.53 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.25 Total: -9.19 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.16 Total: -84.85 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.96 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -59.36 2.85 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520231685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.921 kcal (2) G-P(sol) polarization free energy of solvation -59.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds