Wall clock time and date at job start Mon Mar 30 2020 01:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46745 * 2 1 4 4 C 1.46495 * 119.99724 * 269.99502 * 3 2 1 5 5 C 1.50707 * 109.47181 * 270.00629 * 4 3 2 6 6 H 1.07992 * 119.99840 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99853 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99735 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47289 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46593 * 119.99930 * 9 7 5 12 12 H 1.48498 * 109.47206 * 239.99837 * 9 7 5 13 13 C 1.34772 * 120.00084 * 90.00256 * 3 2 1 14 14 O 1.21281 * 119.99964 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00043 * 359.97438 * 13 3 2 16 16 C 1.50706 * 109.46975 * 180.02562 * 15 13 3 17 17 N 1.29317 * 126.06026 * 90.02755 * 16 15 13 18 18 N 1.26102 * 117.96657 * 179.97438 * 17 16 15 19 19 C 1.30238 * 117.62460 * 0.02562 * 18 17 16 20 20 N 1.38695 * 126.17155 * 179.97438 * 19 18 17 21 21 S 1.76475 * 126.06637 * 269.71744 * 16 15 13 22 22 H 1.09000 * 109.46858 * 60.00382 * 1 2 3 23 23 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47196 * 300.00195 * 1 2 3 25 25 H 1.08992 * 109.47465 * 239.99888 * 2 1 3 26 26 H 1.09004 * 109.46896 * 119.99109 * 2 1 3 27 27 H 1.09005 * 109.47337 * 30.00197 * 4 3 2 28 28 H 1.08995 * 109.47340 * 150.00439 * 4 3 2 29 29 H 0.96997 * 119.99977 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.46872 * 60.00875 * 15 13 3 31 31 H 1.08997 * 109.47234 * 300.00427 * 15 13 3 32 32 H 0.97003 * 120.00060 * 0.02562 * 20 19 18 33 33 H 0.97003 * 119.99878 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1264 -3.6176 9 14 5.9139 2.0973 -3.4163 10 1 6.6012 1.2412 -2.4164 11 1 5.9217 1.4187 -4.7372 12 1 6.6212 3.3986 -3.5241 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1603 1.1671 15 6 1.9913 1.3064 2.4723 16 6 2.3173 2.2300 3.6177 17 7 1.4962 3.0445 4.1962 18 7 1.9335 3.7501 5.1454 19 6 3.1851 3.6083 5.4764 20 7 3.8470 4.2904 6.4865 21 16 3.8852 2.3862 4.4125 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.5817 1.6876 -2.0284 28 1 2.0955 3.1410 -1.1385 29 1 3.6755 3.5168 -4.4435 30 1 2.6213 0.4189 2.5302 31 1 0.9433 1.0125 2.5299 32 1 3.3715 4.9441 7.0227 33 1 4.7856 4.1138 6.6566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527482954.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:26 Heat of formation + Delta-G solvation = 28.183102 kcal Electronic energy + Delta-G solvation = -18243.333478 eV Core-core repulsion = 15238.493953 eV Total energy + Delta-G solvation = -3004.839525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74772 -39.04080 -35.49609 -35.20664 -32.93652 -31.99978 -30.08135 -28.48708 -26.80194 -24.82473 -23.02667 -22.60760 -20.33712 -19.42802 -18.41866 -16.93759 -16.71067 -16.35747 -16.29284 -15.37000 -15.16082 -14.66027 -14.31171 -13.59239 -13.38374 -13.09799 -12.95766 -12.62912 -12.03491 -11.88227 -11.68469 -11.48029 -11.19303 -10.89156 -10.73187 -10.54475 -10.33396 -10.13312 -9.91870 -9.62061 -9.44770 -9.00195 -8.43387 -8.27255 -7.67925 -6.03872 -4.08556 0.69916 0.83887 1.41613 2.85243 3.20099 3.29568 3.34696 3.38099 3.42080 3.90516 4.41201 4.46964 4.97989 5.06256 5.24010 5.31206 5.33519 5.49913 5.66462 5.73848 5.82025 6.06014 6.24765 6.51570 6.60120 7.06013 7.07600 7.46227 7.53809 7.92502 8.23756 8.38504 8.89503 8.89668 9.05841 9.56421 11.04305 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.005254 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.165571 B = 5327.689578 C = 6182.161984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.510 3.490 14 O -0.530 6.530 15 C -0.060 4.060 16 C 0.044 3.956 17 N -0.222 5.222 18 N -0.341 5.341 19 C 0.291 3.709 20 N -0.808 5.808 21 S 0.047 5.953 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.415 0.585 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -6.304 16.905 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.407 6.407 15 C -0.105 4.105 16 C -0.241 4.241 17 N -0.055 5.055 18 N -0.188 5.188 19 C -0.083 4.083 20 N -0.361 5.361 21 S 0.282 5.718 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.248 0.752 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.569 -5.436 16.770 17.638 hybrid contribution 1.282 0.092 -0.182 1.298 sum 0.713 -5.344 16.587 17.442 Atomic orbital electron populations 1.22241 0.96631 1.01518 1.02574 1.21470 0.93679 0.84049 1.02810 1.48220 1.63664 1.13317 1.07442 1.19297 0.96309 0.93721 0.77932 1.21468 0.96896 1.31845 1.06229 0.92392 1.24936 0.97806 0.94935 0.96433 1.69943 1.35583 1.33458 1.14326 0.86458 0.84703 0.78032 0.78313 1.19807 1.20966 1.20922 1.19884 0.79181 0.87002 0.84508 1.90711 1.45334 1.17720 1.86922 1.20286 1.05246 0.96226 0.88706 1.28487 0.89338 1.03080 1.03238 1.70630 1.29102 1.02738 1.03075 1.71324 1.08435 1.24409 1.14623 1.26711 0.92019 0.95309 0.94231 1.41283 1.13642 1.45693 1.35500 1.85767 1.16614 1.38777 1.30637 0.91951 0.92073 0.92845 0.89733 0.91674 0.94831 0.93843 0.92777 0.87057 0.86049 0.75223 0.75231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.27 2.46 -175.06 -0.43 -12.70 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.58 7.67 -10.99 -0.08 10.49 16 14 O -0.53 -13.64 15.61 5.56 0.09 -13.55 16 15 C -0.06 -0.90 4.88 -29.03 -0.14 -1.05 16 16 C 0.04 0.74 6.28 -13.33 -0.08 0.65 16 17 N -0.22 -4.06 11.55 33.57 0.39 -3.67 16 18 N -0.34 -5.81 11.61 31.00 0.36 -5.45 16 19 C 0.29 3.96 9.05 -87.15 -0.79 3.17 16 20 N -0.81 -6.79 9.08 30.98 0.28 -6.51 16 21 S 0.05 0.65 23.54 -107.50 -2.53 -1.88 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 25 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 26 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 27 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.11 1.31 7.40 -51.93 -0.38 0.92 16 31 H 0.12 1.53 7.18 -51.93 -0.37 1.16 16 32 H 0.42 2.78 8.95 -40.82 -0.37 2.42 16 33 H 0.42 2.27 8.95 -40.82 -0.37 1.90 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -36.44 304.17 -6.55 -42.98 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.81 Total: -0.59 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.19 Total: 5.92 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 1.34 Total: -54.20 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.53 Total: -1.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.44 -6.55 -42.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527482954.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.164 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds