Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46919 * 210.06820 * 3 2 1 5 5 C 1.37099 * 120.00176 * 96.12703 * 4 3 2 6 6 H 1.08002 * 120.00072 * 163.68438 * 5 4 3 7 7 C 1.38949 * 119.99841 * 343.68485 * 5 4 3 8 8 N 1.31410 * 119.99882 * 341.81976 * 7 5 4 9 9 Si 1.86804 * 119.99916 * 161.81467 * 7 5 4 10 10 H 1.48501 * 109.46734 * 90.00624 * 9 7 5 11 11 H 1.48504 * 109.46903 * 209.99980 * 9 7 5 12 12 H 1.48498 * 109.47186 * 330.00367 * 9 7 5 13 13 C 1.34780 * 119.99882 * 276.40184 * 4 3 2 14 14 O 1.21294 * 120.00250 * 4.03666 * 13 4 3 15 15 C 1.50700 * 119.99899 * 184.03770 * 13 4 3 16 16 C 1.53003 * 109.47242 * 296.75995 * 15 13 4 17 17 C 1.53002 * 109.47683 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46431 * 59.99880 * 17 16 15 19 19 Cl 1.80303 * 109.46968 * 60.00632 * 18 17 16 20 20 C 1.52995 * 109.47641 * 300.00088 * 18 17 16 21 21 C 1.53001 * 109.47040 * 60.00129 * 20 18 17 22 22 H 1.09008 * 109.47143 * 90.07222 * 3 2 1 23 23 H 1.08994 * 109.47425 * 330.07181 * 3 2 1 24 24 H 0.97004 * 120.00217 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.47543 * 56.75988 * 15 13 4 26 26 H 1.08996 * 109.47265 * 300.00692 * 16 15 13 27 27 H 1.09003 * 109.46802 * 60.00109 * 16 15 13 28 28 H 1.08998 * 109.46709 * 300.00768 * 17 16 15 29 29 H 1.08988 * 109.47530 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46684 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47302 * 300.00745 * 20 18 17 32 32 H 1.09003 * 109.47159 * 180.02562 * 20 18 17 33 33 H 1.09002 * 109.47272 * 180.02562 * 21 20 18 34 34 H 1.09007 * 109.46982 * 60.00056 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1962 0.6920 5 6 3.4437 1.1277 2.0164 6 1 4.0407 1.9114 2.4591 7 6 3.0284 0.0501 2.7889 8 7 2.0327 -0.7049 2.3822 9 14 3.8854 -0.3254 4.4057 10 1 3.2079 0.4057 5.5065 11 1 3.8251 -1.7854 4.6705 12 1 5.3044 0.1050 4.3254 13 6 3.1971 2.3649 0.0282 14 8 2.8161 2.4449 -1.1205 15 6 3.7838 3.5721 0.7133 16 6 2.8990 3.9669 1.8975 17 6 3.4949 5.1922 2.5934 18 6 3.5696 6.3555 1.6024 19 17 1.9124 6.7475 1.0100 20 6 4.4544 5.9608 0.4183 21 6 3.8584 4.7355 -0.2776 22 1 2.9713 0.0021 -1.0277 23 1 2.9717 -0.8897 0.5127 24 1 1.7430 -1.4575 2.9213 25 1 4.7857 3.3356 1.0715 26 1 1.8970 4.2034 1.5394 27 1 2.8462 3.1382 2.6037 28 1 4.4968 4.9551 2.9515 29 1 2.8649 5.4731 3.4372 30 1 3.9946 7.2283 2.0981 31 1 5.4562 5.7237 0.7764 32 1 4.5079 6.7898 -0.2875 33 1 4.4891 4.4540 -1.1210 34 1 2.8566 4.9725 -0.6358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527631398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = -26.481299 kcal Electronic energy + Delta-G solvation = -19287.322363 eV Core-core repulsion = 16245.775954 eV Total energy + Delta-G solvation = -3041.546409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52421 -37.47795 -35.59520 -35.02356 -34.42318 -31.70320 -30.69192 -30.44453 -27.40431 -25.01042 -22.66454 -22.31157 -19.74963 -19.05619 -17.84052 -16.43339 -16.16331 -15.30760 -14.67712 -14.48299 -14.37578 -14.25116 -13.56922 -13.17859 -12.63081 -12.51712 -12.22192 -12.02409 -11.82421 -11.49002 -11.35976 -11.28442 -11.17864 -11.00177 -10.88996 -10.54642 -10.51929 -10.38734 -10.19900 -10.02069 -9.79555 -9.69836 -9.28704 -8.51212 -8.09521 -6.56071 -4.09968 2.47971 3.01458 3.13460 3.15481 3.60993 3.84903 4.05075 4.25952 4.69857 4.77561 4.82638 4.90772 5.09922 5.42064 5.45254 5.55852 5.66886 5.73672 5.77650 5.81373 5.99312 6.17739 6.20814 6.29022 6.55175 6.57077 6.61383 6.71841 6.89854 6.97725 7.25720 7.49853 8.15441 8.88935 8.96450 9.26884 9.68007 10.48050 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.007327 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.347175 B = 3820.313102 C = 4539.690531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.259 3.741 3 C 0.230 3.770 4 N -0.444 5.444 5 C -0.338 4.338 6 H 0.111 0.889 7 C 0.036 3.964 8 N -0.869 5.869 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.471 3.529 14 O -0.595 6.595 15 C -0.082 4.082 16 C -0.126 4.126 17 C -0.122 4.122 18 C 0.002 3.998 19 Cl -0.188 7.188 20 C -0.122 4.122 21 C -0.102 4.102 22 H 0.083 0.917 23 H 0.128 0.872 24 H 0.275 0.725 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.512 8.738 1.851 12.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.059 4.059 3 C 0.104 3.896 4 N -0.163 5.163 5 C -0.465 4.465 6 H 0.128 0.872 7 C -0.169 4.169 8 N -0.506 5.506 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.260 3.740 14 O -0.480 6.480 15 C -0.103 4.103 16 C -0.164 4.164 17 C -0.159 4.159 18 C -0.041 4.041 19 Cl -0.162 7.162 20 C -0.160 4.160 21 C -0.140 4.140 22 H 0.100 0.900 23 H 0.146 0.854 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.426 8.600 1.318 10.816 hybrid contribution 0.656 -0.284 1.109 1.320 sum 7.081 8.316 2.427 11.189 Atomic orbital electron populations 1.80844 1.13836 1.09566 1.12467 1.29275 0.95354 0.91683 0.89591 1.18619 0.81482 0.92253 0.97279 1.43638 1.56424 1.05912 1.10347 1.19711 1.32641 1.09582 0.84596 0.87170 1.25252 0.95062 0.96888 0.99667 1.69891 1.22608 1.18578 1.39572 0.86023 0.79781 0.78104 0.81409 1.20330 1.20666 1.19239 1.20262 0.82798 0.83983 0.86961 1.90567 1.54007 1.84323 1.19129 1.20941 1.00073 0.93238 0.96061 1.21805 0.98961 0.97904 0.97706 1.21870 1.02313 0.94564 0.97159 1.24182 0.82978 0.99849 0.97127 1.98708 1.31796 1.94989 1.90658 1.21867 0.98329 0.99310 0.96475 1.21382 1.02600 0.92638 0.97393 0.89962 0.85409 0.91460 0.89757 0.91443 0.87693 0.90321 0.91074 0.88981 0.90442 0.91185 0.91506 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.79 18.54 42.15 0.78 -12.01 16 2 C 0.26 6.39 13.73 -20.76 -0.28 6.10 16 3 C 0.23 5.06 5.03 -6.83 -0.03 5.02 16 4 N -0.44 -9.96 2.61 -117.93 -0.31 -10.27 16 5 C -0.34 -7.41 7.56 -14.93 -0.11 -7.53 16 6 H 0.11 2.22 5.32 -52.49 -0.28 1.94 16 7 C 0.04 0.82 4.97 -17.47 -0.09 0.73 16 8 N -0.87 -20.96 9.27 55.50 0.51 -20.45 16 9 Si 0.92 17.62 29.59 -169.99 -5.03 12.59 16 10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 13 C 0.47 10.35 6.96 -10.98 -0.08 10.27 16 14 O -0.60 -14.68 15.69 5.55 0.09 -14.59 16 15 C -0.08 -1.43 1.71 -91.77 -0.16 -1.59 16 16 C -0.13 -2.14 4.57 -26.73 -0.12 -2.26 16 17 C -0.12 -1.56 5.52 -26.73 -0.15 -1.71 16 18 C 0.00 0.03 3.60 -26.73 -0.10 -0.07 16 19 Cl -0.19 -2.75 26.00 -51.86 -1.35 -4.10 16 20 C -0.12 -1.46 5.52 -26.73 -0.15 -1.61 16 21 C -0.10 -1.62 4.30 -26.73 -0.11 -1.73 16 22 H 0.08 1.65 7.68 -51.92 -0.40 1.25 16 23 H 0.13 2.75 6.22 -51.93 -0.32 2.42 16 24 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 25 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 26 H 0.07 1.30 7.06 -51.93 -0.37 0.93 16 27 H 0.10 1.97 5.08 -51.93 -0.26 1.70 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.88 8.14 -51.94 -0.42 0.45 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 34 H 0.08 1.39 6.98 -51.92 -0.36 1.03 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -28.06 289.68 -6.38 -34.45 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.06 Total: 4.39 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -1.38 Total: 5.62 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.99 Total: -42.72 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -1.35 Total: -4.10 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.06 -6.38 -34.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527631398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.964 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds