Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46919 * 210.06820 * 3 2 1 5 5 C 1.37099 * 120.00176 * 96.12703 * 4 3 2 6 6 H 1.08002 * 120.00072 * 163.68438 * 5 4 3 7 7 C 1.38949 * 119.99841 * 343.68485 * 5 4 3 8 8 N 1.31410 * 119.99882 * 341.81976 * 7 5 4 9 9 Si 1.86804 * 119.99916 * 161.81467 * 7 5 4 10 10 H 1.48501 * 109.46734 * 90.00624 * 9 7 5 11 11 H 1.48504 * 109.46903 * 209.99980 * 9 7 5 12 12 H 1.48498 * 109.47186 * 330.00367 * 9 7 5 13 13 C 1.34780 * 119.99882 * 276.40184 * 4 3 2 14 14 O 1.21294 * 120.00250 * 4.03666 * 13 4 3 15 15 C 1.50700 * 119.99899 * 184.03770 * 13 4 3 16 16 C 1.53003 * 109.47242 * 296.75995 * 15 13 4 17 17 C 1.53002 * 109.47683 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46431 * 59.99880 * 17 16 15 19 19 Cl 1.80303 * 109.46968 * 60.00632 * 18 17 16 20 20 C 1.52995 * 109.47641 * 300.00088 * 18 17 16 21 21 C 1.53001 * 109.47040 * 60.00129 * 20 18 17 22 22 H 1.09008 * 109.47143 * 90.07222 * 3 2 1 23 23 H 1.08994 * 109.47425 * 330.07181 * 3 2 1 24 24 H 0.97004 * 120.00217 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.47543 * 56.75988 * 15 13 4 26 26 H 1.08996 * 109.47265 * 300.00692 * 16 15 13 27 27 H 1.09003 * 109.46802 * 60.00109 * 16 15 13 28 28 H 1.08998 * 109.46709 * 300.00768 * 17 16 15 29 29 H 1.08988 * 109.47530 * 180.02562 * 17 16 15 30 30 H 1.09005 * 109.46684 * 180.02562 * 18 17 16 31 31 H 1.09001 * 109.47302 * 300.00745 * 20 18 17 32 32 H 1.09003 * 109.47159 * 180.02562 * 20 18 17 33 33 H 1.09002 * 109.47272 * 180.02562 * 21 20 18 34 34 H 1.09007 * 109.46982 * 60.00056 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1962 0.6920 5 6 3.4437 1.1277 2.0164 6 1 4.0407 1.9114 2.4591 7 6 3.0284 0.0501 2.7889 8 7 2.0327 -0.7049 2.3822 9 14 3.8854 -0.3254 4.4057 10 1 3.2079 0.4057 5.5065 11 1 3.8251 -1.7854 4.6705 12 1 5.3044 0.1050 4.3254 13 6 3.1971 2.3649 0.0282 14 8 2.8161 2.4449 -1.1205 15 6 3.7838 3.5721 0.7133 16 6 2.8990 3.9669 1.8975 17 6 3.4949 5.1922 2.5934 18 6 3.5696 6.3555 1.6024 19 17 1.9124 6.7475 1.0100 20 6 4.4544 5.9608 0.4183 21 6 3.8584 4.7355 -0.2776 22 1 2.9713 0.0021 -1.0277 23 1 2.9717 -0.8897 0.5127 24 1 1.7430 -1.4575 2.9213 25 1 4.7857 3.3356 1.0715 26 1 1.8970 4.2034 1.5394 27 1 2.8462 3.1382 2.6037 28 1 4.4968 4.9551 2.9515 29 1 2.8649 5.4731 3.4372 30 1 3.9946 7.2283 2.0981 31 1 5.4562 5.7237 0.7764 32 1 4.5079 6.7898 -0.2875 33 1 4.4891 4.4540 -1.1210 34 1 2.8566 4.9725 -0.6358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527631398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = -41.648332 kcal Electronic energy + Delta-G solvation = -19287.980055 eV Core-core repulsion = 16245.775954 eV Total energy + Delta-G solvation = -3042.204101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09873 -38.80499 -37.38775 -36.35170 -36.15227 -33.44474 -31.98626 -31.60692 -29.09855 -26.72643 -23.99821 -23.47522 -21.13336 -20.49030 -19.54210 -18.13750 -17.86804 -16.51742 -16.27807 -16.03951 -15.71035 -15.35719 -15.06006 -14.84560 -14.42032 -14.00758 -13.58695 -13.53778 -13.24565 -13.10390 -13.03803 -12.78981 -12.67821 -12.38542 -12.18116 -12.05650 -11.98739 -11.79858 -11.51726 -11.32335 -11.08646 -10.94491 -10.79706 -10.21395 -9.88302 -8.28479 -5.86906 1.47777 1.53067 1.58690 1.68515 1.84072 2.08799 2.27292 2.41332 3.08852 3.15126 3.67231 3.75046 3.80601 4.03901 4.22203 4.33392 4.40449 4.53333 4.59969 4.66858 4.73912 4.92443 4.98725 4.99904 5.16033 5.18903 5.33008 5.35725 5.49053 5.60250 5.63741 5.78566 6.41034 6.99378 7.15089 7.53632 7.94345 8.75752 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.007327 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.347175 B = 3820.313102 C = 4539.690531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.268 3.732 3 C 0.229 3.771 4 N -0.453 5.453 5 C -0.339 4.339 6 H 0.132 0.868 7 C -0.005 4.005 8 N -0.904 5.904 9 Si 0.986 3.014 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.248 1.248 13 C 0.457 3.543 14 O -0.629 6.629 15 C -0.076 4.076 16 C -0.120 4.120 17 C -0.115 4.115 18 C 0.005 3.995 19 Cl -0.219 7.219 20 C -0.114 4.114 21 C -0.099 4.099 22 H 0.099 0.901 23 H 0.134 0.866 24 H 0.270 0.730 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.245 10.270 3.376 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.049 4.049 3 C 0.102 3.898 4 N -0.172 5.172 5 C -0.466 4.466 6 H 0.149 0.851 7 C -0.206 4.206 8 N -0.543 5.543 9 Si 0.811 3.189 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.172 1.172 13 C 0.248 3.752 14 O -0.516 6.516 15 C -0.097 4.097 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.038 4.038 19 Cl -0.193 7.193 20 C -0.151 4.151 21 C -0.137 4.137 22 H 0.117 0.883 23 H 0.151 0.849 24 H 0.080 0.920 25 H 0.127 0.873 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.181 10.150 2.846 13.980 hybrid contribution -0.207 -0.776 0.588 0.996 sum 8.974 9.374 3.435 13.424 Atomic orbital electron populations 1.80821 1.15009 1.10850 1.13843 1.29899 0.96017 0.90572 0.88461 1.18816 0.79856 0.92744 0.98387 1.43922 1.56213 1.06172 1.10871 1.20165 1.32198 1.09894 0.84334 0.85124 1.26030 0.95283 0.96673 1.02603 1.70009 1.24228 1.19188 1.40907 0.85017 0.79589 0.76969 0.77355 1.20922 1.21751 1.17173 1.21208 0.82239 0.84946 0.86770 1.90538 1.55387 1.84944 1.20776 1.21001 1.00753 0.91668 0.96268 1.21677 0.97668 0.99353 0.97106 1.21866 1.03721 0.92658 0.97029 1.24448 0.81302 1.00970 0.97035 1.98718 1.34461 1.95133 1.91024 1.21866 0.99283 0.97551 0.96449 1.21323 1.01181 0.93876 0.97304 0.88304 0.84892 0.92032 0.87340 0.94683 0.89628 0.87252 0.90446 0.85261 0.87324 0.89839 0.92009 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.31 18.54 20.01 0.37 -27.94 16 2 C 0.27 13.51 13.73 89.44 1.23 14.73 16 3 C 0.23 10.13 5.03 84.57 0.43 10.55 16 4 N -0.45 -20.20 2.61 -645.40 -1.68 -21.88 16 5 C -0.34 -14.44 7.56 84.04 0.64 -13.80 16 6 H 0.13 4.91 5.32 -2.91 -0.02 4.90 16 7 C 0.00 -0.20 4.97 84.93 0.42 0.22 16 8 N -0.90 -43.92 9.27 21.66 0.20 -43.72 16 9 Si 0.99 35.02 29.59 68.60 2.03 37.05 16 10 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 11 H -0.29 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 13 C 0.46 20.03 6.96 87.66 0.61 20.64 16 14 O -0.63 -31.52 15.69 -3.07 -0.05 -31.57 16 15 C -0.08 -2.53 1.71 -11.54 -0.02 -2.55 16 16 C -0.12 -3.90 4.57 30.60 0.14 -3.76 16 17 C -0.12 -2.54 5.52 30.60 0.17 -2.37 16 18 C 0.01 0.11 3.60 30.59 0.11 0.22 16 19 Cl -0.22 -6.16 26.00 -2.72 -0.07 -6.23 16 20 C -0.11 -2.27 5.52 30.59 0.17 -2.10 16 21 C -0.10 -2.97 4.30 30.60 0.13 -2.84 16 22 H 0.10 3.99 7.68 -2.38 -0.02 3.97 16 23 H 0.13 5.76 6.22 -2.39 -0.01 5.74 16 24 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 25 H 0.11 3.09 7.70 -2.39 -0.02 3.08 16 26 H 0.03 1.35 7.06 -2.39 -0.02 1.33 16 27 H 0.09 3.09 5.08 -2.39 -0.01 3.08 16 28 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 34 H 0.04 1.65 6.98 -2.38 -0.02 1.64 16 Total: -1.00 -62.26 289.68 5.94 -56.32 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.12 Total: 19.03 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 4.02 Total: 18.94 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -1.11 Total: -93.54 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.05 Total: -31.57 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 17 Polarization: -6.16 SS G_CDS: -0.07 Total: -6.23 kcal Total: -62.26 5.94 -56.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527631398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.668 kcal (2) G-P(sol) polarization free energy of solvation -62.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds