Wall clock time and date at job start Mon Mar 30 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86797 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47463 * 268.32908 * 3 2 1 5 5 H 1.48500 * 109.46913 * 28.33267 * 3 2 1 6 6 H 1.48502 * 109.46852 * 148.32793 * 3 2 1 7 7 C 1.39030 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99529 * 350.25156 * 7 2 1 9 9 N 1.36938 * 120.00014 * 170.25153 * 7 2 1 10 10 C 1.34775 * 119.99897 * 137.48001 * 9 7 2 11 11 O 1.21537 * 120.00001 * 184.32746 * 10 9 7 12 12 C 1.47959 * 120.00057 * 4.32415 * 10 9 7 13 13 C 1.39821 * 120.19246 * 173.97621 * 12 10 9 14 14 C 1.38773 * 117.89376 * 179.97438 * 13 12 10 15 15 C 1.38607 * 118.08025 * 359.97438 * 14 13 12 16 16 N 1.32169 * 120.08407 * 359.97438 * 15 14 13 17 17 N 1.28352 * 122.31442 * 359.77286 * 16 15 14 18 18 C 1.39348 * 120.00008 * 317.47870 * 9 7 2 19 19 C 1.39082 * 119.69861 * 320.47954 * 18 9 7 20 20 C 1.38384 * 119.10014 * 179.70236 * 19 18 9 21 21 C 1.38828 * 118.48810 * 0.58098 * 20 19 18 22 22 C 1.38157 * 119.31677 * 359.44167 * 21 20 19 23 23 N 1.31879 * 120.84753 * 0.27001 * 22 21 20 24 24 H 0.97008 * 119.99135 * 359.97438 * 1 2 3 25 25 H 1.08002 * 121.05334 * 359.95398 * 13 12 10 26 26 H 1.08007 * 120.96226 * 180.02562 * 14 13 12 27 27 H 1.07999 * 119.95894 * 180.02562 * 15 14 13 28 28 H 1.08006 * 120.45345 * 359.97438 * 19 18 9 29 29 H 1.07994 * 120.76113 * 180.29884 * 20 19 18 30 30 H 1.08007 * 120.34278 * 179.70932 * 21 20 19 31 31 H 1.07990 * 119.57737 * 180.25426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 2.5304 2.0260 -1.3994 5 1 1.4278 2.6625 0.6645 6 1 3.5269 1.4504 0.7351 7 6 2.0085 -1.2041 -0.0005 8 1 1.4800 -2.1327 0.1574 9 7 3.3630 -1.2126 -0.2013 10 6 4.1506 -2.0076 0.5498 11 8 5.3586 -1.9578 0.4262 12 6 3.5445 -2.9410 1.5249 13 6 4.3462 -3.8552 2.2150 14 6 3.7282 -4.7079 3.1188 15 6 2.3559 -4.6013 3.2827 16 7 1.6734 -3.7067 2.5893 17 7 2.2362 -2.9105 1.7547 18 6 3.9271 -0.3994 -1.1823 19 6 3.2795 -0.2420 -2.4030 20 6 3.8476 0.5734 -3.3661 21 6 5.0546 1.1960 -3.0784 22 6 5.6427 0.9942 -1.8446 23 7 5.0748 0.2160 -0.9440 24 1 -0.4849 0.8402 0.0004 25 1 5.4127 -3.8968 2.0498 26 1 4.2999 -5.4330 3.6790 27 1 1.8439 -5.2495 3.9784 28 1 2.3437 -0.7458 -2.5952 29 1 3.3654 0.7185 -4.3214 30 1 5.5269 1.8350 -3.8099 31 1 6.5795 1.4798 -1.6148 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530828649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:28 Heat of formation + Delta-G solvation = 107.827094 kcal Electronic energy + Delta-G solvation = -20252.512691 eV Core-core repulsion = 17115.682837 eV Total energy + Delta-G solvation = -3136.829854 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71771 -39.93794 -38.04463 -35.29732 -32.69513 -32.29136 -32.14225 -31.65298 -29.54301 -25.54940 -24.83694 -24.11158 -22.86129 -22.44370 -19.97048 -18.47747 -17.54209 -16.54827 -16.22712 -15.94857 -15.73589 -15.12861 -14.80022 -14.54060 -13.94646 -13.59767 -13.46769 -13.19041 -12.82364 -12.75734 -12.51696 -12.35344 -11.39841 -11.20142 -11.06818 -10.57969 -10.07748 -9.86788 -9.73654 -9.54765 -9.25710 -9.23094 -8.88414 -8.75283 -8.55731 -7.59129 -6.49287 -4.19532 0.93450 1.21617 1.73004 1.93698 3.09700 3.22737 3.35651 3.43353 3.71630 4.12089 4.24810 4.45433 4.55410 4.86934 4.93744 5.02234 5.05201 5.24634 5.34166 5.37256 5.59181 5.63258 5.81627 5.88570 6.08987 6.30413 6.37922 6.49686 6.58836 6.75843 7.02231 7.46469 7.89296 8.22252 8.63414 8.74105 9.09150 9.23690 9.38748 10.55493 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.008284 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.449740 B = 3379.302430 C = 4219.333090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.084 3.916 3 Si 0.841 3.159 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.332 4.332 8 H 0.150 0.850 9 N -0.383 5.383 10 C 0.536 3.464 11 O -0.538 6.538 12 C 0.040 3.960 13 C -0.076 4.076 14 C -0.138 4.138 15 C 0.035 3.965 16 N -0.253 5.253 17 N -0.150 5.150 18 C 0.348 3.652 19 C -0.168 4.168 20 C -0.068 4.068 21 C -0.215 4.215 22 C 0.111 3.889 23 N -0.483 5.483 24 H 0.278 0.722 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -3.987 -0.308 7.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.126 4.126 3 Si 0.665 3.335 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.460 4.460 8 H 0.167 0.833 9 N -0.097 5.097 10 C 0.325 3.675 11 O -0.416 6.416 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.167 4.167 15 C -0.129 4.129 16 N -0.096 5.096 17 N 0.003 4.997 18 C 0.121 3.879 19 C -0.191 4.191 20 C -0.094 4.094 21 C -0.236 4.236 22 C -0.048 4.048 23 N -0.197 5.197 24 H 0.089 0.911 25 H 0.171 0.829 26 H 0.165 0.835 27 H 0.182 0.818 28 H 0.163 0.837 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.396 -3.353 0.153 6.355 hybrid contribution 1.166 0.491 -0.304 1.301 sum 6.562 -2.862 -0.150 7.160 Atomic orbital electron populations 1.69606 1.05965 1.28324 1.43546 1.25326 0.95219 0.97870 0.94195 0.87318 0.81716 0.83958 0.80469 1.18538 1.20969 1.17122 1.19937 0.78249 0.97657 1.50111 0.83307 1.41455 1.08175 1.33695 1.26354 1.17944 0.85679 0.83246 0.80672 1.90722 1.13218 1.70266 1.67403 1.22806 0.92952 0.96520 0.98208 1.22354 1.02253 0.92684 0.93323 1.22261 0.96062 0.99802 0.98587 1.24425 0.92826 0.97460 0.98183 1.73459 1.32495 1.01307 1.02289 1.74580 1.07793 1.11333 1.05948 1.18737 0.89421 0.91992 0.87794 1.21802 1.03125 1.01922 0.92245 1.21311 0.94656 0.94690 0.98775 1.21880 0.97931 1.04571 0.99250 1.22440 0.98681 0.94282 0.89407 1.67457 1.10580 1.07694 1.33961 0.91110 0.82883 0.83544 0.81752 0.83650 0.85265 0.85637 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.22 13.95 55.50 0.77 -22.45 16 2 C 0.08 2.27 5.15 -17.47 -0.09 2.18 16 3 Si 0.84 21.13 24.41 -169.99 -4.15 16.98 16 4 H -0.26 -6.29 6.22 56.52 0.35 -5.93 16 5 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.25 -6.64 6.73 56.52 0.38 -6.26 16 7 C -0.33 -8.79 7.44 -14.98 -0.11 -8.90 16 8 H 0.15 4.15 5.88 -52.48 -0.31 3.84 16 9 N -0.38 -9.75 2.41 -61.68 -0.15 -9.90 16 10 C 0.54 13.14 7.53 -12.28 -0.09 13.05 16 11 O -0.54 -13.65 15.35 5.33 0.08 -13.57 16 12 C 0.04 0.87 6.73 -82.84 -0.56 0.31 16 13 C -0.08 -1.27 9.73 -38.79 -0.38 -1.65 16 14 C -0.14 -1.81 10.20 -39.25 -0.40 -2.21 16 15 C 0.03 0.50 11.31 -17.27 -0.20 0.31 16 16 N -0.25 -5.03 11.51 30.59 0.35 -4.68 16 17 N -0.15 -3.43 7.50 33.31 0.25 -3.18 16 18 C 0.35 8.38 3.51 -154.71 -0.54 7.84 16 19 C -0.17 -3.59 7.25 -39.21 -0.28 -3.88 16 20 C -0.07 -1.21 9.85 -39.31 -0.39 -1.59 16 21 C -0.21 -3.57 10.11 -39.39 -0.40 -3.97 16 22 C 0.11 2.11 11.18 -17.56 -0.20 1.91 16 23 N -0.48 -11.38 8.03 -12.35 -0.10 -11.48 16 24 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.15 2.30 7.73 -52.49 -0.41 1.90 16 26 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 27 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.15 3.10 7.64 -52.48 -0.40 2.70 16 29 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 31 H 0.15 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 273.05 15.07 4.11 4.11 Total: -1.00 -32.98 273.05 -4.89 -37.88 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -2.44 Total: 2.90 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.63 Total: 3.39 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 1.13 Total: -51.69 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.15 Total: 16.98 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.98 -4.89 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530828649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.702 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds