Wall clock time and date at job start Mon Mar 30 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86797 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47463 * 268.32908 * 3 2 1 5 5 H 1.48500 * 109.46913 * 28.33267 * 3 2 1 6 6 H 1.48502 * 109.46852 * 148.32793 * 3 2 1 7 7 C 1.39030 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99529 * 350.25156 * 7 2 1 9 9 N 1.36938 * 120.00014 * 170.25153 * 7 2 1 10 10 C 1.34775 * 119.99897 * 137.48001 * 9 7 2 11 11 O 1.21537 * 120.00001 * 184.32746 * 10 9 7 12 12 C 1.47959 * 120.00057 * 4.32415 * 10 9 7 13 13 C 1.39821 * 120.19246 * 173.97621 * 12 10 9 14 14 C 1.38773 * 117.89376 * 179.97438 * 13 12 10 15 15 C 1.38607 * 118.08025 * 359.97438 * 14 13 12 16 16 N 1.32169 * 120.08407 * 359.97438 * 15 14 13 17 17 N 1.28352 * 122.31442 * 359.77286 * 16 15 14 18 18 C 1.39348 * 120.00008 * 317.47870 * 9 7 2 19 19 C 1.39082 * 119.69861 * 320.47954 * 18 9 7 20 20 C 1.38384 * 119.10014 * 179.70236 * 19 18 9 21 21 C 1.38828 * 118.48810 * 0.58098 * 20 19 18 22 22 C 1.38157 * 119.31677 * 359.44167 * 21 20 19 23 23 N 1.31879 * 120.84753 * 0.27001 * 22 21 20 24 24 H 0.97008 * 119.99135 * 359.97438 * 1 2 3 25 25 H 1.08002 * 121.05334 * 359.95398 * 13 12 10 26 26 H 1.08007 * 120.96226 * 180.02562 * 14 13 12 27 27 H 1.07999 * 119.95894 * 180.02562 * 15 14 13 28 28 H 1.08006 * 120.45345 * 359.97438 * 19 18 9 29 29 H 1.07994 * 120.76113 * 180.29884 * 20 19 18 30 30 H 1.08007 * 120.34278 * 179.70932 * 21 20 19 31 31 H 1.07990 * 119.57737 * 180.25426 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6176 0.0000 4 1 2.5304 2.0260 -1.3994 5 1 1.4278 2.6625 0.6645 6 1 3.5269 1.4504 0.7351 7 6 2.0085 -1.2041 -0.0005 8 1 1.4800 -2.1327 0.1574 9 7 3.3630 -1.2126 -0.2013 10 6 4.1506 -2.0076 0.5498 11 8 5.3586 -1.9578 0.4262 12 6 3.5445 -2.9410 1.5249 13 6 4.3462 -3.8552 2.2150 14 6 3.7282 -4.7079 3.1188 15 6 2.3559 -4.6013 3.2827 16 7 1.6734 -3.7067 2.5893 17 7 2.2362 -2.9105 1.7547 18 6 3.9271 -0.3994 -1.1823 19 6 3.2795 -0.2420 -2.4030 20 6 3.8476 0.5734 -3.3661 21 6 5.0546 1.1960 -3.0784 22 6 5.6427 0.9942 -1.8446 23 7 5.0748 0.2160 -0.9440 24 1 -0.4849 0.8402 0.0004 25 1 5.4127 -3.8968 2.0498 26 1 4.2999 -5.4330 3.6790 27 1 1.8439 -5.2495 3.9784 28 1 2.3437 -0.7458 -2.5952 29 1 3.3654 0.7185 -4.3214 30 1 5.5269 1.8350 -3.8099 31 1 6.5795 1.4798 -1.6148 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530828649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:28 Heat of formation + Delta-G solvation = 83.618088 kcal Electronic energy + Delta-G solvation = -20253.562472 eV Core-core repulsion = 17115.682837 eV Total energy + Delta-G solvation = -3137.879635 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27638 -41.46056 -39.71875 -37.11608 -34.18945 -33.98133 -33.64975 -33.23773 -31.09423 -27.35941 -26.44004 -25.48147 -24.37634 -23.97764 -21.62982 -20.30461 -19.12534 -17.89559 -17.79892 -17.45478 -17.33460 -16.69379 -16.45555 -16.23238 -15.48339 -15.24816 -14.95961 -14.90495 -14.56718 -14.25523 -14.01269 -13.91193 -13.20382 -12.90149 -12.76265 -12.30711 -11.93029 -11.52949 -11.16512 -11.04214 -10.96160 -10.83758 -10.57526 -10.32517 -10.20324 -9.31623 -8.49737 -6.21239 -0.47470 -0.06191 0.21410 0.44475 1.11033 1.18569 1.35644 1.75700 2.08881 2.13671 2.74161 2.76612 3.05413 3.21778 3.53259 3.69290 3.81287 3.93848 4.04312 4.09980 4.22452 4.30529 4.32915 4.47351 4.83840 4.89290 5.01891 5.10815 5.29152 5.32055 5.40660 5.80534 6.05891 6.28936 6.76197 7.01242 7.17644 7.55887 7.81680 8.58947 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.008284 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.449740 B = 3379.302430 C = 4219.333090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.244 1.244 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.321 4.321 8 H 0.128 0.872 9 N -0.402 5.402 10 C 0.529 3.471 11 O -0.559 6.559 12 C 0.009 3.991 13 C -0.082 4.082 14 C -0.102 4.102 15 C 0.049 3.951 16 N -0.295 5.295 17 N -0.197 5.197 18 C 0.313 3.687 19 C -0.187 4.187 20 C -0.063 4.063 21 C -0.189 4.189 22 C 0.095 3.905 23 N -0.521 5.521 24 H 0.280 0.720 25 H 0.168 0.832 26 H 0.210 0.790 27 H 0.218 0.782 28 H 0.133 0.867 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -4.508 -0.495 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.152 4.152 3 Si 0.716 3.284 4 H -0.168 1.168 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.449 4.449 8 H 0.145 0.855 9 N -0.117 5.117 10 C 0.318 3.682 11 O -0.439 6.439 12 C -0.137 4.137 13 C -0.111 4.111 14 C -0.131 4.131 15 C -0.115 4.115 16 N -0.137 5.137 17 N -0.042 5.042 18 C 0.088 3.912 19 C -0.210 4.210 20 C -0.089 4.089 21 C -0.209 4.209 22 C -0.064 4.064 23 N -0.236 5.236 24 H 0.090 0.910 25 H 0.185 0.815 26 H 0.227 0.773 27 H 0.234 0.766 28 H 0.151 0.849 29 H 0.190 0.810 30 H 0.197 0.803 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.245 -3.854 -0.066 8.206 hybrid contribution 0.805 0.464 -0.193 0.949 sum 8.050 -3.391 -0.259 8.739 Atomic orbital electron populations 1.69657 1.06684 1.28697 1.46769 1.25635 0.95502 0.99426 0.94630 0.86582 0.79200 0.82025 0.80623 1.16809 1.21289 1.20293 1.19631 0.78894 0.96866 1.49536 0.85498 1.41537 1.07772 1.34735 1.27651 1.18475 0.85699 0.83173 0.80867 1.90659 1.13770 1.71037 1.68388 1.22712 0.93633 0.98115 0.99280 1.22629 1.02700 0.92304 0.93515 1.22916 0.95565 0.98451 0.96132 1.25294 0.93895 0.95566 0.96735 1.73314 1.33758 1.03047 1.03562 1.74406 1.08611 1.13410 1.07765 1.18934 0.90668 0.93047 0.88577 1.21901 1.03050 1.03411 0.92636 1.21877 0.94871 0.92811 0.99342 1.22461 0.96659 1.02864 0.98918 1.23198 0.99800 0.93500 0.89889 1.67381 1.10907 1.09030 1.36298 0.90978 0.81478 0.77311 0.76561 0.84949 0.81015 0.80251 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.11 13.95 21.67 0.30 -50.81 16 2 C 0.05 3.05 5.15 84.96 0.44 3.49 16 3 Si 0.89 45.53 24.41 68.60 1.67 47.20 16 4 H -0.24 -11.53 6.22 99.48 0.62 -10.91 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.28 -15.42 6.73 99.48 0.67 -14.75 16 7 C -0.32 -18.07 7.44 84.09 0.63 -17.45 16 8 H 0.13 7.63 5.88 -2.91 -0.02 7.62 16 9 N -0.40 -21.53 2.41 -467.34 -1.13 -22.66 16 10 C 0.53 27.20 7.53 86.82 0.65 27.85 16 11 O -0.56 -29.41 15.35 -3.83 -0.06 -29.47 16 12 C 0.01 0.39 6.73 41.95 0.28 0.68 16 13 C -0.08 -2.64 9.73 22.78 0.22 -2.42 16 14 C -0.10 -2.25 10.20 22.49 0.23 -2.02 16 15 C 0.05 1.25 11.31 84.73 0.96 2.21 16 16 N -0.30 -11.77 11.51 -57.13 -0.66 -12.42 16 17 N -0.20 -9.36 7.50 -48.53 -0.36 -9.73 16 18 C 0.31 15.46 3.51 132.93 0.47 15.93 16 19 C -0.19 -8.03 7.25 22.51 0.16 -7.87 16 20 C -0.06 -2.05 9.85 22.45 0.22 -1.83 16 21 C -0.19 -5.47 10.11 22.39 0.23 -5.25 16 22 C 0.09 3.37 11.18 84.67 0.95 4.32 16 23 N -0.52 -24.69 8.03 -193.00 -1.55 -26.24 16 24 H 0.28 15.18 8.31 -92.70 -0.77 14.41 16 25 H 0.17 4.79 7.73 -2.91 -0.02 4.77 16 26 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.13 5.89 7.64 -2.91 -0.02 5.87 16 29 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.18 4.98 8.06 -2.92 -0.02 4.96 16 Total: -1.00 -80.40 273.05 4.70 -75.70 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.05 Total: 10.77 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.43 Total: 17.65 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -3.40 Total: -121.86 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.06 Total: -29.47 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -80.40 4.70 -75.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530828649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.320 kcal (2) G-P(sol) polarization free energy of solvation -80.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds