Wall clock time and date at job start Mon Mar 30 2020 01:32:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31415 * 1
3 3 Si 1.86801 * 120.00143 * 2 1
4 4 H 1.48501 * 109.46896 * 270.00144 * 3 2 1
5 5 H 1.48497 * 109.46972 * 29.99724 * 3 2 1
6 6 H 1.48494 * 109.47103 * 150.00340 * 3 2 1
7 7 C 1.38955 * 119.99620 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99918 * 359.97438 * 7 2 1
9 9 N 1.37096 * 119.99464 * 179.97438 * 7 2 1
10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7
12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7
13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9
14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 10
15 15 O 1.21280 * 119.99761 * 359.97438 * 14 13 12
16 16 C 1.50698 * 120.00338 * 179.97438 * 14 13 12
17 17 C 1.53000 * 109.47352 * 179.97438 * 16 14 13
18 18 H 1.08996 * 110.76861 * 305.70215 * 17 16 14
19 19 C 1.54571 * 110.86580 * 69.22581 * 17 16 14
20 20 O 1.46157 * 104.28889 * 144.85945 * 19 17 16
21 21 C 1.34071 * 110.02694 * 329.67533 * 20 19 17
22 22 O 1.20821 * 125.09347 * 200.68270 * 21 20 19
23 23 C 1.51327 * 109.80950 * 20.67916 * 21 20 19
24 24 H 0.97000 * 119.99478 * 0.02562 * 1 2 3
25 25 H 0.97000 * 120.00868 * 359.72070 * 9 7 2
26 26 H 1.08998 * 109.47224 * 299.99701 * 12 10 9
27 27 H 1.09002 * 109.47054 * 60.00213 * 12 10 9
28 28 H 0.97001 * 120.00220 * 359.97438 * 13 12 10
29 29 H 1.09000 * 109.47392 * 299.99886 * 16 14 13
30 30 H 1.09002 * 109.46875 * 60.00167 * 16 14 13
31 31 H 1.09000 * 110.43965 * 263.75371 * 19 17 16
32 32 H 1.09002 * 110.43843 * 26.27767 * 19 17 16
33 33 H 1.09006 * 110.36682 * 238.84542 * 23 21 20
34 34 H 1.09002 * 110.36693 * 116.52631 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4456 2.6526 0.7000
6 1 3.5457 1.4401 0.6999
7 6 2.0088 -1.2034 -0.0005
8 1 1.4688 -2.1387 -0.0005
9 7 3.3798 -1.2034 -0.0011
10 6 4.0537 -2.3707 -0.0011
11 8 3.4472 -3.4211 0.0044
12 6 5.5606 -2.3707 -0.0079
13 7 6.0489 -3.7519 -0.0071
14 6 7.3740 -3.9983 -0.0121
15 8 8.1621 -3.0765 -0.0177
16 6 7.8763 -5.4191 -0.0107
17 6 9.4062 -5.4192 -0.0178
18 1 9.7889 -4.8266 -0.8487
19 6 9.9631 -4.9034 1.3287
20 8 11.1748 -5.6918 1.5438
21 6 11.0402 -6.9025 0.9838
22 8 11.6873 -7.8796 1.2776
23 6 9.9563 -6.8618 -0.0715
24 1 -0.4849 0.8401 -0.0004
25 1 3.8649 -0.3634 -0.0052
26 1 5.9199 -1.8593 -0.9009
27 1 5.9280 -1.8546 0.8791
28 1 5.4186 -4.4892 -0.0023
29 1 7.5167 -5.9307 0.8821
30 1 7.5092 -5.9351 -0.8979
31 1 10.2022 -3.8421 1.2603
32 1 9.2466 -5.0822 2.1304
33 1 9.1688 -7.5772 0.1658
34 1 10.3764 -7.0714 -1.0552
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001531942473.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:57
Heat of formation + Delta-G solvation = -158.473808 kcal
Electronic energy + Delta-G solvation = -19820.742445 eV
Core-core repulsion = 16332.763247 eV
Total energy + Delta-G solvation = -3487.979198 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 270.109 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.31756 -39.82641 -38.46921 -37.68900 -34.80040 -34.47927 -33.88130 -31.89185
-29.78226 -28.23016 -26.91314 -24.38212 -21.91090 -21.58397 -20.32921 -19.71341
-18.76238 -17.81561 -17.10453 -16.87907 -16.53175 -15.91871 -15.70022 -15.45466
-14.94177 -14.71699 -14.22207 -14.03823 -13.90573 -13.50517 -13.17209 -12.87217
-12.59875 -12.38965 -12.24990 -12.15969 -11.68090 -11.57532 -11.30561 -10.87894
-10.71488 -10.53347 -10.14282 -9.97650 -9.78181 -9.07790 -8.87960 -8.38964
-6.48406 -4.01473 1.75902 2.51420 2.92819 2.97356 2.98233 3.01538
3.07673 3.46035 3.60245 3.88121 3.96425 4.17186 4.33239 4.44388
4.70860 4.87565 4.94520 5.03806 5.06291 5.15999 5.25504 5.40479
5.56564 5.63716 5.66003 5.68552 6.37301 6.45361 7.15141 7.35036
7.52656 7.91278 8.14476 8.36411 8.73488 9.21262 9.53753 10.63578
Molecular weight = 270.11amu
Principal moments of inertia in cm(-1)
A = 0.053439 B = 0.002977 C = 0.002872
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.840683 B = 9404.619184 C = 9745.648830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.872 5.872
2 C 0.046 3.954
3 Si 0.880 3.120
4 H -0.268 1.268
5 H -0.274 1.274
6 H -0.267 1.267
7 C -0.312 4.312
8 H 0.122 0.878
9 N -0.574 5.574
10 C 0.435 3.565
11 O -0.580 6.580
12 C 0.105 3.895
13 N -0.705 5.705
14 C 0.510 3.490
15 O -0.550 6.550
16 C -0.134 4.134
17 C -0.106 4.106
18 H 0.110 0.890
19 C 0.062 3.938
20 O -0.349 6.349
21 C 0.484 3.516
22 O -0.462 6.462
23 C -0.185 4.185
24 H 0.276 0.724
25 H 0.375 0.625
26 H 0.086 0.914
27 H 0.086 0.914
28 H 0.413 0.587
29 H 0.102 0.898
30 H 0.108 0.892
31 H 0.123 0.877
32 H 0.085 0.915
33 H 0.116 0.884
34 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.549 -7.337 -0.747 18.118
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C -0.159 4.159
3 Si 0.706 3.294
4 H -0.194 1.194
5 H -0.199 1.199
6 H -0.192 1.192
7 C -0.440 4.440
8 H 0.139 0.861
9 N -0.212 5.212
10 C 0.221 3.779
11 O -0.465 6.465
12 C -0.022 4.022
13 N -0.359 5.359
14 C 0.296 3.704
15 O -0.428 6.428
16 C -0.173 4.173
17 C -0.125 4.125
18 H 0.128 0.872
19 C -0.012 4.012
20 O -0.266 6.266
21 C 0.324 3.676
22 O -0.347 6.347
23 C -0.223 4.223
24 H 0.087 0.913
25 H 0.208 0.792
26 H 0.104 0.896
27 H 0.104 0.896
28 H 0.252 0.748
29 H 0.120 0.880
30 H 0.126 0.874
31 H 0.141 0.859
32 H 0.104 0.896
33 H 0.134 0.866
34 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 16.924 -7.610 -0.481 18.562
hybrid contribution -0.059 1.149 -0.118 1.157
sum 16.865 -6.461 -0.600 18.070
Atomic orbital electron populations
1.69618 1.05739 1.27921 1.47796 1.25083 0.95546 0.98226 0.97026
0.86664 0.79895 0.83720 0.79163 1.19356 1.19918 1.19234 1.19440
0.78920 0.96819 1.48871 0.86056 1.42131 1.07744 1.06150 1.65139
1.19623 0.88036 0.84915 0.85328 1.90544 1.69173 1.30885 1.55870
1.20992 0.93893 0.83947 1.03402 1.45722 1.07061 1.09374 1.73767
1.20482 0.82230 0.91287 0.76441 1.90695 1.55318 1.46318 1.50489
1.21703 0.94614 0.95163 1.05865 1.22261 0.94997 0.95280 0.99932
0.87210 1.24410 0.83264 0.97011 0.96515 1.87089 1.40236 1.26359
1.72915 1.23107 0.82221 0.81555 0.80707 1.90719 1.48204 1.31343
1.64390 1.23002 0.99369 0.98750 1.01216 0.91295 0.79226 0.89631
0.89635 0.74835 0.87991 0.87415 0.85860 0.89629 0.86610 0.86497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.26 13.96 55.50 0.77 -23.49 16
2 C 0.05 1.19 5.50 -17.46 -0.10 1.09 16
3 Si 0.88 18.31 27.73 -169.99 -4.71 13.59 16
4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16
5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
6 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16
7 C -0.31 -8.29 10.16 -14.93 -0.15 -8.44 16
8 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16
9 N -0.57 -12.66 5.09 -10.96 -0.06 -12.72 16
10 C 0.43 8.88 7.85 -10.98 -0.09 8.79 16
11 O -0.58 -13.75 15.24 5.54 0.08 -13.67 16
12 C 0.11 1.60 6.15 -5.20 -0.03 1.57 16
13 N -0.71 -9.14 5.53 -61.48 -0.34 -9.48 16
14 C 0.51 5.66 7.64 -10.99 -0.08 5.58 16
15 O -0.55 -7.56 14.95 5.56 0.08 -7.47 16
16 C -0.13 -0.88 5.00 -27.88 -0.14 -1.02 16
17 C -0.11 -0.71 2.75 -89.01 -0.24 -0.95 16
18 H 0.11 0.78 7.97 -51.93 -0.41 0.37 16
19 C 0.06 0.50 6.67 37.98 0.25 0.75 16
20 O -0.35 -3.73 11.06 -38.49 -0.43 -4.15 16
21 C 0.48 5.00 8.58 36.31 0.31 5.32 16
22 O -0.46 -6.45 18.00 -18.41 -0.33 -6.78 16
23 C -0.19 -1.13 6.52 -26.79 -0.17 -1.30 16
24 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16
25 H 0.37 7.24 5.77 -40.82 -0.24 7.01 16
26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
28 H 0.41 5.30 7.44 -40.82 -0.30 4.99 16
29 H 0.10 0.51 8.01 -51.93 -0.42 0.09 16
30 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.12 1.05 7.67 -51.93 -0.40 0.66 16
32 H 0.09 0.60 7.82 -51.93 -0.41 0.20 16
33 H 0.12 0.51 7.80 -51.93 -0.40 0.11 16
34 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16
LS Contribution 299.87 15.07 4.52 4.52
Total: -1.00 -33.42 299.87 -4.67 -38.10
By element:
Atomic # 1 Polarization: 13.99 SS G_CDS: -3.82 Total: 10.16 kcal
Atomic # 6 Polarization: 11.83 SS G_CDS: -0.44 Total: 11.39 kcal
Atomic # 7 Polarization: -46.07 SS G_CDS: 0.38 Total: -45.69 kcal
Atomic # 8 Polarization: -31.48 SS G_CDS: -0.59 Total: -32.07 kcal
Atomic # 14 Polarization: 18.31 SS G_CDS: -4.71 Total: 13.59 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -33.42 -4.67 -38.10 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001531942473.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -120.376 kcal
(2) G-P(sol) polarization free energy of solvation -33.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds