Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00144 * 3 2 1 5 5 H 1.48497 * 109.46972 * 29.99724 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00340 * 3 2 1 7 7 C 1.38955 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00338 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47352 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.76861 * 305.70215 * 17 16 14 19 19 C 1.54571 * 110.86580 * 69.22581 * 17 16 14 20 20 O 1.46157 * 104.28889 * 144.85945 * 19 17 16 21 21 C 1.34071 * 110.02694 * 329.67533 * 20 19 17 22 22 O 1.20821 * 125.09347 * 200.68270 * 21 20 19 23 23 C 1.51327 * 109.80950 * 20.67916 * 21 20 19 24 24 H 0.97000 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 26 26 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 27 27 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 28 28 H 0.97001 * 120.00220 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.47392 * 299.99886 * 16 14 13 30 30 H 1.09002 * 109.46875 * 60.00167 * 16 14 13 31 31 H 1.09000 * 110.43965 * 263.75371 * 19 17 16 32 32 H 1.09002 * 110.43843 * 26.27767 * 19 17 16 33 33 H 1.09006 * 110.36682 * 238.84542 * 23 21 20 34 34 H 1.09002 * 110.36693 * 116.52631 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 0.0044 12 6 5.5606 -2.3707 -0.0079 13 7 6.0489 -3.7519 -0.0071 14 6 7.3740 -3.9983 -0.0121 15 8 8.1621 -3.0765 -0.0177 16 6 7.8763 -5.4191 -0.0107 17 6 9.4062 -5.4192 -0.0178 18 1 9.7889 -4.8266 -0.8487 19 6 9.9631 -4.9034 1.3287 20 8 11.1748 -5.6918 1.5438 21 6 11.0402 -6.9025 0.9838 22 8 11.6873 -7.8796 1.2776 23 6 9.9563 -6.8618 -0.0715 24 1 -0.4849 0.8401 -0.0004 25 1 3.8649 -0.3634 -0.0052 26 1 5.9199 -1.8593 -0.9009 27 1 5.9280 -1.8546 0.8791 28 1 5.4186 -4.4892 -0.0023 29 1 7.5167 -5.9307 0.8821 30 1 7.5092 -5.9351 -0.8979 31 1 10.2022 -3.8421 1.2603 32 1 9.2466 -5.0822 2.1304 33 1 9.1688 -7.5772 0.1658 34 1 10.3764 -7.0714 -1.0552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531942473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = -158.473808 kcal Electronic energy + Delta-G solvation = -19820.742445 eV Core-core repulsion = 16332.763247 eV Total energy + Delta-G solvation = -3487.979198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31756 -39.82641 -38.46921 -37.68900 -34.80040 -34.47927 -33.88130 -31.89185 -29.78226 -28.23016 -26.91314 -24.38212 -21.91090 -21.58397 -20.32921 -19.71341 -18.76238 -17.81561 -17.10453 -16.87907 -16.53175 -15.91871 -15.70022 -15.45466 -14.94177 -14.71699 -14.22207 -14.03823 -13.90573 -13.50517 -13.17209 -12.87217 -12.59875 -12.38965 -12.24990 -12.15969 -11.68090 -11.57532 -11.30561 -10.87894 -10.71488 -10.53347 -10.14282 -9.97650 -9.78181 -9.07790 -8.87960 -8.38964 -6.48406 -4.01473 1.75902 2.51420 2.92819 2.97356 2.98233 3.01538 3.07673 3.46035 3.60245 3.88121 3.96425 4.17186 4.33239 4.44388 4.70860 4.87565 4.94520 5.03806 5.06291 5.15999 5.25504 5.40479 5.56564 5.63716 5.66003 5.68552 6.37301 6.45361 7.15141 7.35036 7.52656 7.91278 8.14476 8.36411 8.73488 9.21262 9.53753 10.63578 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.053439 B = 0.002977 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.840683 B = 9404.619184 C = 9745.648830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.435 3.565 11 O -0.580 6.580 12 C 0.105 3.895 13 N -0.705 5.705 14 C 0.510 3.490 15 O -0.550 6.550 16 C -0.134 4.134 17 C -0.106 4.106 18 H 0.110 0.890 19 C 0.062 3.938 20 O -0.349 6.349 21 C 0.484 3.516 22 O -0.462 6.462 23 C -0.185 4.185 24 H 0.276 0.724 25 H 0.375 0.625 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.413 0.587 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.549 -7.337 -0.747 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.212 5.212 10 C 0.221 3.779 11 O -0.465 6.465 12 C -0.022 4.022 13 N -0.359 5.359 14 C 0.296 3.704 15 O -0.428 6.428 16 C -0.173 4.173 17 C -0.125 4.125 18 H 0.128 0.872 19 C -0.012 4.012 20 O -0.266 6.266 21 C 0.324 3.676 22 O -0.347 6.347 23 C -0.223 4.223 24 H 0.087 0.913 25 H 0.208 0.792 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.252 0.748 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.924 -7.610 -0.481 18.562 hybrid contribution -0.059 1.149 -0.118 1.157 sum 16.865 -6.461 -0.600 18.070 Atomic orbital electron populations 1.69618 1.05739 1.27921 1.47796 1.25083 0.95546 0.98226 0.97026 0.86664 0.79895 0.83720 0.79163 1.19356 1.19918 1.19234 1.19440 0.78920 0.96819 1.48871 0.86056 1.42131 1.07744 1.06150 1.65139 1.19623 0.88036 0.84915 0.85328 1.90544 1.69173 1.30885 1.55870 1.20992 0.93893 0.83947 1.03402 1.45722 1.07061 1.09374 1.73767 1.20482 0.82230 0.91287 0.76441 1.90695 1.55318 1.46318 1.50489 1.21703 0.94614 0.95163 1.05865 1.22261 0.94997 0.95280 0.99932 0.87210 1.24410 0.83264 0.97011 0.96515 1.87089 1.40236 1.26359 1.72915 1.23107 0.82221 0.81555 0.80707 1.90719 1.48204 1.31343 1.64390 1.23002 0.99369 0.98750 1.01216 0.91295 0.79226 0.89631 0.89635 0.74835 0.87991 0.87415 0.85860 0.89629 0.86610 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.26 13.96 55.50 0.77 -23.49 16 2 C 0.05 1.19 5.50 -17.46 -0.10 1.09 16 3 Si 0.88 18.31 27.73 -169.99 -4.71 13.59 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 7 C -0.31 -8.29 10.16 -14.93 -0.15 -8.44 16 8 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 9 N -0.57 -12.66 5.09 -10.96 -0.06 -12.72 16 10 C 0.43 8.88 7.85 -10.98 -0.09 8.79 16 11 O -0.58 -13.75 15.24 5.54 0.08 -13.67 16 12 C 0.11 1.60 6.15 -5.20 -0.03 1.57 16 13 N -0.71 -9.14 5.53 -61.48 -0.34 -9.48 16 14 C 0.51 5.66 7.64 -10.99 -0.08 5.58 16 15 O -0.55 -7.56 14.95 5.56 0.08 -7.47 16 16 C -0.13 -0.88 5.00 -27.88 -0.14 -1.02 16 17 C -0.11 -0.71 2.75 -89.01 -0.24 -0.95 16 18 H 0.11 0.78 7.97 -51.93 -0.41 0.37 16 19 C 0.06 0.50 6.67 37.98 0.25 0.75 16 20 O -0.35 -3.73 11.06 -38.49 -0.43 -4.15 16 21 C 0.48 5.00 8.58 36.31 0.31 5.32 16 22 O -0.46 -6.45 18.00 -18.41 -0.33 -6.78 16 23 C -0.19 -1.13 6.52 -26.79 -0.17 -1.30 16 24 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.37 7.24 5.77 -40.82 -0.24 7.01 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.41 5.30 7.44 -40.82 -0.30 4.99 16 29 H 0.10 0.51 8.01 -51.93 -0.42 0.09 16 30 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.12 1.05 7.67 -51.93 -0.40 0.66 16 32 H 0.09 0.60 7.82 -51.93 -0.41 0.20 16 33 H 0.12 0.51 7.80 -51.93 -0.40 0.11 16 34 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -33.42 299.87 -4.67 -38.10 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.82 Total: 10.16 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.44 Total: 11.39 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.38 Total: -45.69 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.59 Total: -32.07 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.71 Total: 13.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.42 -4.67 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531942473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.376 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds