Wall clock time and date at job start Mon Mar 30 2020 01:32:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31415 * 1
3 3 Si 1.86801 * 120.00143 * 2 1
4 4 H 1.48501 * 109.46896 * 270.00144 * 3 2 1
5 5 H 1.48497 * 109.46972 * 29.99724 * 3 2 1
6 6 H 1.48494 * 109.47103 * 150.00340 * 3 2 1
7 7 C 1.38955 * 119.99620 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99918 * 359.97438 * 7 2 1
9 9 N 1.37096 * 119.99464 * 179.97438 * 7 2 1
10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7
12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7
13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9
14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 10
15 15 O 1.21280 * 119.99761 * 359.97438 * 14 13 12
16 16 C 1.50698 * 120.00338 * 179.97438 * 14 13 12
17 17 C 1.53000 * 109.47352 * 179.97438 * 16 14 13
18 18 H 1.08996 * 110.76861 * 305.70215 * 17 16 14
19 19 C 1.54571 * 110.86580 * 69.22581 * 17 16 14
20 20 O 1.46157 * 104.28889 * 144.85945 * 19 17 16
21 21 C 1.34071 * 110.02694 * 329.67533 * 20 19 17
22 22 O 1.20821 * 125.09347 * 200.68270 * 21 20 19
23 23 C 1.51327 * 109.80950 * 20.67916 * 21 20 19
24 24 H 0.97000 * 119.99478 * 0.02562 * 1 2 3
25 25 H 0.97000 * 120.00868 * 359.72070 * 9 7 2
26 26 H 1.08998 * 109.47224 * 299.99701 * 12 10 9
27 27 H 1.09002 * 109.47054 * 60.00213 * 12 10 9
28 28 H 0.97001 * 120.00220 * 359.97438 * 13 12 10
29 29 H 1.09000 * 109.47392 * 299.99886 * 16 14 13
30 30 H 1.09002 * 109.46875 * 60.00167 * 16 14 13
31 31 H 1.09000 * 110.43965 * 263.75371 * 19 17 16
32 32 H 1.09002 * 110.43843 * 26.27767 * 19 17 16
33 33 H 1.09006 * 110.36682 * 238.84542 * 23 21 20
34 34 H 1.09002 * 110.36693 * 116.52631 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4456 2.6526 0.7000
6 1 3.5457 1.4401 0.6999
7 6 2.0088 -1.2034 -0.0005
8 1 1.4688 -2.1387 -0.0005
9 7 3.3798 -1.2034 -0.0011
10 6 4.0537 -2.3707 -0.0011
11 8 3.4472 -3.4211 0.0044
12 6 5.5606 -2.3707 -0.0079
13 7 6.0489 -3.7519 -0.0071
14 6 7.3740 -3.9983 -0.0121
15 8 8.1621 -3.0765 -0.0177
16 6 7.8763 -5.4191 -0.0107
17 6 9.4062 -5.4192 -0.0178
18 1 9.7889 -4.8266 -0.8487
19 6 9.9631 -4.9034 1.3287
20 8 11.1748 -5.6918 1.5438
21 6 11.0402 -6.9025 0.9838
22 8 11.6873 -7.8796 1.2776
23 6 9.9563 -6.8618 -0.0715
24 1 -0.4849 0.8401 -0.0004
25 1 3.8649 -0.3634 -0.0052
26 1 5.9199 -1.8593 -0.9009
27 1 5.9280 -1.8546 0.8791
28 1 5.4186 -4.4892 -0.0023
29 1 7.5167 -5.9307 0.8821
30 1 7.5092 -5.9351 -0.8979
31 1 10.2022 -3.8421 1.2603
32 1 9.2466 -5.0822 2.1304
33 1 9.1688 -7.5772 0.1658
34 1 10.3764 -7.0714 -1.0552
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001531942473.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:57
Heat of formation + Delta-G solvation = -185.016493 kcal
Electronic energy + Delta-G solvation = -19821.893422 eV
Core-core repulsion = 16332.763247 eV
Total energy + Delta-G solvation = -3489.130175 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 270.109 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-42.04856 -40.93448 -39.96797 -38.56257 -36.28566 -35.38003 -35.11641 -33.82252
-30.61931 -29.17499 -27.89231 -26.04123 -22.67749 -22.27281 -21.44245 -21.17072
-20.45941 -18.74908 -18.03507 -17.73729 -17.32927 -17.16826 -16.87167 -16.74031
-16.43117 -15.84680 -15.34775 -14.94749 -14.90161 -14.57206 -14.44358 -14.17379
-13.93781 -13.71991 -13.27488 -12.96086 -12.88615 -12.44102 -12.27468 -12.17606
-12.00251 -11.56865 -11.51960 -11.33301 -10.86728 -10.63255 -10.32352 -10.10469
-8.45030 -6.06945 1.00301 1.31527 1.34583 1.44457 1.66599 1.82545
2.06140 2.21089 2.29326 2.90043 2.99990 3.11670 3.29905 3.63760
3.74956 3.97645 4.10435 4.31758 4.44701 4.45792 4.50118 4.57982
4.70299 4.76803 4.88844 5.13384 5.32340 5.49752 5.76377 5.89556
6.38910 6.48991 6.57944 6.79908 7.21631 7.32400 7.80057 8.71421
Molecular weight = 270.11amu
Principal moments of inertia in cm(-1)
A = 0.053439 B = 0.002977 C = 0.002872
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.840683 B = 9404.619184 C = 9745.648830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C -0.009 4.009
3 Si 0.959 3.041
4 H -0.257 1.257
5 H -0.276 1.276
6 H -0.231 1.231
7 C -0.331 4.331
8 H 0.063 0.937
9 N -0.580 5.580
10 C 0.444 3.556
11 O -0.615 6.615
12 C 0.118 3.882
13 N -0.712 5.712
14 C 0.511 3.489
15 O -0.575 6.575
16 C -0.125 4.125
17 C -0.097 4.097
18 H 0.108 0.892
19 C 0.057 3.943
20 O -0.372 6.372
21 C 0.479 3.521
22 O -0.509 6.509
23 C -0.168 4.168
24 H 0.281 0.719
25 H 0.392 0.608
26 H 0.104 0.896
27 H 0.103 0.897
28 H 0.415 0.585
29 H 0.125 0.875
30 H 0.136 0.864
31 H 0.115 0.885
32 H 0.097 0.903
33 H 0.141 0.859
34 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.491 -6.738 -1.251 19.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.209 4.209
3 Si 0.779 3.221
4 H -0.181 1.181
5 H -0.201 1.201
6 H -0.154 1.154
7 C -0.460 4.460
8 H 0.082 0.918
9 N -0.220 5.220
10 C 0.231 3.769
11 O -0.501 6.501
12 C -0.010 4.010
13 N -0.366 5.366
14 C 0.299 3.701
15 O -0.455 6.455
16 C -0.164 4.164
17 C -0.116 4.116
18 H 0.126 0.874
19 C -0.016 4.016
20 O -0.289 6.289
21 C 0.323 3.677
22 O -0.397 6.397
23 C -0.205 4.205
24 H 0.090 0.910
25 H 0.227 0.773
26 H 0.122 0.878
27 H 0.121 0.879
28 H 0.253 0.747
29 H 0.143 0.857
30 H 0.153 0.847
31 H 0.134 0.866
32 H 0.115 0.885
33 H 0.159 0.841
34 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 18.891 -7.020 -0.988 20.178
hybrid contribution -0.652 0.853 0.053 1.075
sum 18.239 -6.166 -0.936 19.276
Atomic orbital electron populations
1.69785 1.08084 1.29422 1.49407 1.26080 0.96415 1.02642 0.95794
0.85440 0.79593 0.77021 0.80024 1.18129 1.20090 1.15443 1.19024
0.81091 0.95187 1.50668 0.91848 1.41961 1.06084 1.07597 1.66371
1.20637 0.90353 0.83749 0.82126 1.90532 1.70898 1.32277 1.56367
1.20855 0.89092 0.86031 1.05057 1.45813 1.07966 1.08269 1.74599
1.21207 0.81013 0.92898 0.74940 1.90697 1.55647 1.47710 1.51480
1.21764 0.94079 0.92238 1.08340 1.22198 0.95055 0.95513 0.98865
0.87404 1.24554 0.82715 0.96376 0.97954 1.87053 1.41660 1.26887
1.73334 1.23799 0.82293 0.80701 0.80923 1.90690 1.50232 1.32808
1.65935 1.22982 0.98344 0.98748 1.00442 0.90980 0.77251 0.87846
0.87896 0.74704 0.85684 0.84655 0.86640 0.88474 0.84080 0.84489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.35 13.96 21.67 0.30 -53.04 16
2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16
3 Si 0.96 36.71 27.73 68.60 1.90 38.61 16
4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16
5 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16
6 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16
7 C -0.33 -18.09 10.16 84.04 0.85 -17.24 16
8 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16
9 N -0.58 -25.12 5.09 -306.97 -1.56 -26.68 16
10 C 0.44 17.68 7.85 87.65 0.69 18.37 16
11 O -0.61 -29.37 15.24 -3.08 -0.05 -29.42 16
12 C 0.12 3.24 6.15 85.63 0.53 3.77 16
13 N -0.71 -16.44 5.53 -466.81 -2.58 -19.02 16
14 C 0.51 9.64 7.64 87.66 0.67 10.31 16
15 O -0.58 -14.11 14.95 -3.03 -0.05 -14.16 16
16 C -0.12 -1.12 5.00 29.85 0.15 -0.97 16
17 C -0.10 -0.98 2.75 -9.75 -0.03 -1.01 16
18 H 0.11 1.19 7.97 -2.39 -0.02 1.17 16
19 C 0.06 0.81 6.67 72.52 0.48 1.29 16
20 O -0.37 -7.59 11.06 -50.23 -0.56 -8.14 16
21 C 0.48 9.27 8.58 71.44 0.61 9.88 16
22 O -0.51 -14.05 18.00 21.65 0.39 -13.66 16
23 C -0.17 -1.46 6.52 30.55 0.20 -1.26 16
24 H 0.28 14.78 8.31 -92.71 -0.77 14.00 16
25 H 0.39 14.10 5.77 -92.71 -0.53 13.57 16
26 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16
27 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16
28 H 0.41 9.64 7.44 -92.71 -0.69 8.95 16
29 H 0.13 0.65 8.01 -2.39 -0.02 0.63 16
30 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16
31 H 0.12 1.82 7.67 -2.39 -0.02 1.80 16
32 H 0.10 1.13 7.82 -2.39 -0.02 1.11 16
33 H 0.14 0.60 7.80 -2.38 -0.02 0.58 16
34 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -77.70 299.87 2.30 -75.40
By element:
Atomic # 1 Polarization: 27.11 SS G_CDS: -0.12 Total: 26.99 kcal
Atomic # 6 Polarization: 18.50 SS G_CDS: 4.62 Total: 23.13 kcal
Atomic # 7 Polarization: -94.90 SS G_CDS: -3.84 Total: -98.74 kcal
Atomic # 8 Polarization: -65.12 SS G_CDS: -0.26 Total: -65.38 kcal
Atomic # 14 Polarization: 36.71 SS G_CDS: 1.90 Total: 38.61 kcal
Total: -77.70 2.30 -75.40 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001531942473.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -109.621 kcal
(2) G-P(sol) polarization free energy of solvation -77.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) -185.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds