Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00144 * 3 2 1 5 5 H 1.48497 * 109.46972 * 29.99724 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00340 * 3 2 1 7 7 C 1.38955 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34774 * 120.00288 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00338 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47352 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.76861 * 305.70215 * 17 16 14 19 19 C 1.54571 * 110.86580 * 69.22581 * 17 16 14 20 20 O 1.46157 * 104.28889 * 144.85945 * 19 17 16 21 21 C 1.34071 * 110.02694 * 329.67533 * 20 19 17 22 22 O 1.20821 * 125.09347 * 200.68270 * 21 20 19 23 23 C 1.51327 * 109.80950 * 20.67916 * 21 20 19 24 24 H 0.97000 * 119.99478 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 26 26 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 27 27 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 28 28 H 0.97001 * 120.00220 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.47392 * 299.99886 * 16 14 13 30 30 H 1.09002 * 109.46875 * 60.00167 * 16 14 13 31 31 H 1.09000 * 110.43965 * 263.75371 * 19 17 16 32 32 H 1.09002 * 110.43843 * 26.27767 * 19 17 16 33 33 H 1.09006 * 110.36682 * 238.84542 * 23 21 20 34 34 H 1.09002 * 110.36693 * 116.52631 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 0.0044 12 6 5.5606 -2.3707 -0.0079 13 7 6.0489 -3.7519 -0.0071 14 6 7.3740 -3.9983 -0.0121 15 8 8.1621 -3.0765 -0.0177 16 6 7.8763 -5.4191 -0.0107 17 6 9.4062 -5.4192 -0.0178 18 1 9.7889 -4.8266 -0.8487 19 6 9.9631 -4.9034 1.3287 20 8 11.1748 -5.6918 1.5438 21 6 11.0402 -6.9025 0.9838 22 8 11.6873 -7.8796 1.2776 23 6 9.9563 -6.8618 -0.0715 24 1 -0.4849 0.8401 -0.0004 25 1 3.8649 -0.3634 -0.0052 26 1 5.9199 -1.8593 -0.9009 27 1 5.9280 -1.8546 0.8791 28 1 5.4186 -4.4892 -0.0023 29 1 7.5167 -5.9307 0.8821 30 1 7.5092 -5.9351 -0.8979 31 1 10.2022 -3.8421 1.2603 32 1 9.2466 -5.0822 2.1304 33 1 9.1688 -7.5772 0.1658 34 1 10.3764 -7.0714 -1.0552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531942473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = -185.016493 kcal Electronic energy + Delta-G solvation = -19821.893422 eV Core-core repulsion = 16332.763247 eV Total energy + Delta-G solvation = -3489.130175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04856 -40.93448 -39.96797 -38.56257 -36.28566 -35.38003 -35.11641 -33.82252 -30.61931 -29.17499 -27.89231 -26.04123 -22.67749 -22.27281 -21.44245 -21.17072 -20.45941 -18.74908 -18.03507 -17.73729 -17.32927 -17.16826 -16.87167 -16.74031 -16.43117 -15.84680 -15.34775 -14.94749 -14.90161 -14.57206 -14.44358 -14.17379 -13.93781 -13.71991 -13.27488 -12.96086 -12.88615 -12.44102 -12.27468 -12.17606 -12.00251 -11.56865 -11.51960 -11.33301 -10.86728 -10.63255 -10.32352 -10.10469 -8.45030 -6.06945 1.00301 1.31527 1.34583 1.44457 1.66599 1.82545 2.06140 2.21089 2.29326 2.90043 2.99990 3.11670 3.29905 3.63760 3.74956 3.97645 4.10435 4.31758 4.44701 4.45792 4.50118 4.57982 4.70299 4.76803 4.88844 5.13384 5.32340 5.49752 5.76377 5.89556 6.38910 6.48991 6.57944 6.79908 7.21631 7.32400 7.80057 8.71421 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.053439 B = 0.002977 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.840683 B = 9404.619184 C = 9745.648830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.580 5.580 10 C 0.444 3.556 11 O -0.615 6.615 12 C 0.118 3.882 13 N -0.712 5.712 14 C 0.511 3.489 15 O -0.575 6.575 16 C -0.125 4.125 17 C -0.097 4.097 18 H 0.108 0.892 19 C 0.057 3.943 20 O -0.372 6.372 21 C 0.479 3.521 22 O -0.509 6.509 23 C -0.168 4.168 24 H 0.281 0.719 25 H 0.392 0.608 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.415 0.585 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.491 -6.738 -1.251 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.220 5.220 10 C 0.231 3.769 11 O -0.501 6.501 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.299 3.701 15 O -0.455 6.455 16 C -0.164 4.164 17 C -0.116 4.116 18 H 0.126 0.874 19 C -0.016 4.016 20 O -0.289 6.289 21 C 0.323 3.677 22 O -0.397 6.397 23 C -0.205 4.205 24 H 0.090 0.910 25 H 0.227 0.773 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.253 0.747 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 18.891 -7.020 -0.988 20.178 hybrid contribution -0.652 0.853 0.053 1.075 sum 18.239 -6.166 -0.936 19.276 Atomic orbital electron populations 1.69785 1.08084 1.29422 1.49407 1.26080 0.96415 1.02642 0.95794 0.85440 0.79593 0.77021 0.80024 1.18129 1.20090 1.15443 1.19024 0.81091 0.95187 1.50668 0.91848 1.41961 1.06084 1.07597 1.66371 1.20637 0.90353 0.83749 0.82126 1.90532 1.70898 1.32277 1.56367 1.20855 0.89092 0.86031 1.05057 1.45813 1.07966 1.08269 1.74599 1.21207 0.81013 0.92898 0.74940 1.90697 1.55647 1.47710 1.51480 1.21764 0.94079 0.92238 1.08340 1.22198 0.95055 0.95513 0.98865 0.87404 1.24554 0.82715 0.96376 0.97954 1.87053 1.41660 1.26887 1.73334 1.23799 0.82293 0.80701 0.80923 1.90690 1.50232 1.32808 1.65935 1.22982 0.98344 0.98748 1.00442 0.90980 0.77251 0.87846 0.87896 0.74704 0.85684 0.84655 0.86640 0.88474 0.84080 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.35 13.96 21.67 0.30 -53.04 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 0.96 36.71 27.73 68.60 1.90 38.61 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 7 C -0.33 -18.09 10.16 84.04 0.85 -17.24 16 8 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 9 N -0.58 -25.12 5.09 -306.97 -1.56 -26.68 16 10 C 0.44 17.68 7.85 87.65 0.69 18.37 16 11 O -0.61 -29.37 15.24 -3.08 -0.05 -29.42 16 12 C 0.12 3.24 6.15 85.63 0.53 3.77 16 13 N -0.71 -16.44 5.53 -466.81 -2.58 -19.02 16 14 C 0.51 9.64 7.64 87.66 0.67 10.31 16 15 O -0.58 -14.11 14.95 -3.03 -0.05 -14.16 16 16 C -0.12 -1.12 5.00 29.85 0.15 -0.97 16 17 C -0.10 -0.98 2.75 -9.75 -0.03 -1.01 16 18 H 0.11 1.19 7.97 -2.39 -0.02 1.17 16 19 C 0.06 0.81 6.67 72.52 0.48 1.29 16 20 O -0.37 -7.59 11.06 -50.23 -0.56 -8.14 16 21 C 0.48 9.27 8.58 71.44 0.61 9.88 16 22 O -0.51 -14.05 18.00 21.65 0.39 -13.66 16 23 C -0.17 -1.46 6.52 30.55 0.20 -1.26 16 24 H 0.28 14.78 8.31 -92.71 -0.77 14.00 16 25 H 0.39 14.10 5.77 -92.71 -0.53 13.57 16 26 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.41 9.64 7.44 -92.71 -0.69 8.95 16 29 H 0.13 0.65 8.01 -2.39 -0.02 0.63 16 30 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.12 1.82 7.67 -2.39 -0.02 1.80 16 32 H 0.10 1.13 7.82 -2.39 -0.02 1.11 16 33 H 0.14 0.60 7.80 -2.38 -0.02 0.58 16 34 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.70 299.87 2.30 -75.40 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.12 Total: 26.99 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 4.62 Total: 23.13 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -3.84 Total: -98.74 kcal Atomic # 8 Polarization: -65.12 SS G_CDS: -0.26 Total: -65.38 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 1.90 Total: 38.61 kcal Total: -77.70 2.30 -75.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531942473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.621 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds