Wall clock time and date at job start Mon Mar 30 2020 00:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 119.99439 * 2 1 4 4 H 1.48503 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47630 * 299.99971 * 3 2 1 6 6 H 1.48504 * 109.47211 * 60.00189 * 3 2 1 7 7 C 1.40021 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.79034 * 180.02562 * 9 7 2 11 11 C 1.38315 * 119.13290 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.66966 * 359.97438 * 11 10 9 13 13 C 1.39651 * 119.49900 * 0.02562 * 12 11 10 14 14 N 1.39177 * 119.57994 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00516 * 185.32776 * 14 13 12 16 16 O 1.21556 * 119.99370 * 354.85040 * 15 14 13 17 17 C 1.47789 * 120.00269 * 175.12928 * 15 14 13 18 18 C 1.39965 * 120.93888 * 359.71645 * 17 15 14 19 19 N 1.32143 * 118.91841 * 179.71884 * 18 17 15 20 20 C 1.31877 * 120.96910 * 0.56999 * 19 18 17 21 21 N 1.31869 * 122.09932 * 359.70622 * 20 19 18 22 22 C 1.32148 * 120.97061 * 359.97438 * 21 20 19 23 23 N 1.31947 * 120.84588 * 0.27426 * 13 12 11 24 24 H 0.96999 * 120.00351 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.43034 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.66167 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.24949 * 180.02562 * 12 11 10 28 28 H 0.96999 * 119.99544 * 5.32845 * 14 13 12 29 29 H 1.08001 * 120.54162 * 359.97438 * 18 17 15 30 30 H 1.07999 * 118.94672 * 179.71957 * 20 19 18 31 31 H 1.07994 * 120.53576 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3467 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3011 -2.4366 0.0005 10 6 2.0087 -3.6517 0.0016 11 6 1.3036 -4.8416 0.0022 12 6 -0.0825 -4.7936 0.0021 13 6 -0.7277 -3.5551 0.0010 14 7 -2.1185 -3.5050 0.0005 15 6 -2.7502 -2.3195 -0.1090 16 8 -2.1085 -1.2871 -0.1129 17 6 -4.2234 -2.2744 -0.2180 18 6 -4.9815 -3.4509 -0.2155 19 7 -6.2967 -3.3638 -0.3094 20 6 -6.8934 -2.1926 -0.4155 21 7 -6.2175 -1.0603 -0.4275 22 6 -4.8994 -1.0541 -0.3321 23 7 -0.0356 -2.4317 -0.0054 24 1 -0.4850 0.8400 -0.0004 25 1 3.0887 -3.6557 0.0029 26 1 1.8220 -5.7890 0.0026 27 1 -0.6585 -5.7073 0.0030 28 1 -2.6333 -4.3234 0.0788 29 1 -4.4997 -4.4141 -0.1340 30 1 -7.9699 -2.1596 -0.4949 31 1 -4.3530 -0.1227 -0.3422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536309840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:52 Heat of formation + Delta-G solvation = 78.793770 kcal Electronic energy + Delta-G solvation = -19546.373272 eV Core-core repulsion = 16408.284439 eV Total energy + Delta-G solvation = -3138.088833 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11383 -39.21923 -37.49495 -34.44664 -33.77824 -33.10113 -32.15733 -30.37728 -29.07769 -25.84509 -25.05432 -24.51823 -22.20078 -21.32663 -19.84057 -18.27806 -17.62113 -17.57625 -16.58118 -15.98781 -15.09445 -14.70408 -14.51567 -14.15596 -14.00056 -13.79228 -13.67270 -13.32619 -12.90518 -12.17470 -12.04437 -11.50782 -11.23009 -10.99574 -10.95416 -10.70101 -10.54763 -9.98360 -9.90510 -9.57516 -9.40742 -9.26500 -9.10895 -8.05216 -7.34532 -7.08542 -6.22314 -4.46803 0.49377 0.95827 2.70143 3.00010 3.14668 3.17824 3.20762 3.43359 3.52132 3.95298 4.01598 4.04187 4.10759 4.44389 4.80712 4.85821 5.08174 5.24618 5.71579 5.95517 6.04189 6.22028 6.39388 6.54439 6.71512 6.77518 6.79074 7.15695 7.44480 7.51564 7.73687 7.88096 7.93852 8.09864 8.34456 8.63373 8.95469 9.03001 10.14018 10.40616 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.006224 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.736482 B = 4497.436140 C = 5934.689323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.270 3.730 10 C -0.302 4.302 11 C -0.036 4.036 12 C -0.354 4.354 13 C 0.370 3.630 14 N -0.658 5.658 15 C 0.521 3.479 16 O -0.393 6.393 17 C -0.220 4.220 18 C 0.171 3.829 19 N -0.525 5.525 20 C 0.298 3.702 21 N -0.523 5.523 22 C 0.201 3.799 23 N -0.474 5.474 24 H 0.272 0.728 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.398 0.602 29 H 0.169 0.831 30 H 0.197 0.803 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 -3.623 -0.295 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.278 5.278 2 C -0.171 4.171 3 Si 0.722 3.278 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.325 4.325 11 C -0.060 4.060 12 C -0.380 4.380 13 C 0.132 3.868 14 N -0.305 5.305 15 C 0.301 3.699 16 O -0.256 6.256 17 C -0.228 4.228 18 C 0.004 3.996 19 N -0.238 5.238 20 C 0.011 3.989 21 N -0.236 5.236 22 C 0.034 3.966 23 N -0.193 5.193 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.232 0.768 29 H 0.186 0.814 30 H 0.214 0.786 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.557 -1.780 -0.397 10.713 hybrid contribution 1.355 -0.766 0.105 1.560 sum -9.202 -2.547 -0.292 9.553 Atomic orbital electron populations 1.70308 1.05892 1.27408 1.24176 1.26173 0.95140 1.00695 0.95062 0.86435 0.80924 0.82046 0.78437 1.18563 1.19998 1.20009 1.19642 0.94177 0.89332 1.42158 0.89800 1.18383 0.87036 0.92041 0.88001 1.21647 0.98658 0.93488 1.18676 1.20571 0.93131 0.96607 0.95682 1.20476 0.94852 0.94830 1.27875 1.18521 0.82784 0.91142 0.94396 1.43195 1.05459 1.08707 1.73186 1.18041 0.85285 0.85586 0.81003 1.91260 1.64181 1.30639 1.39527 1.22270 0.97538 0.96666 1.06337 1.23476 0.89423 0.98277 0.88413 1.68408 1.11248 1.29699 1.14455 1.25133 1.01375 0.82893 0.89486 1.68540 1.08777 1.31681 1.14616 1.23551 0.89215 0.98316 0.85469 1.68671 1.07187 1.23171 1.20237 0.91610 0.88439 0.88476 0.88948 0.76760 0.81365 0.78603 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.63 8.98 55.55 0.50 -17.13 16 2 C 0.06 1.49 5.50 -17.35 -0.10 1.40 16 3 Si 0.90 18.79 29.56 -169.99 -5.02 13.77 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.42 -11.33 9.14 -37.74 -0.34 -11.68 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.27 7.39 6.55 -85.00 -0.56 6.83 16 10 C -0.30 -7.37 9.83 -38.66 -0.38 -7.75 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.35 -7.63 9.95 -38.89 -0.39 -8.02 16 13 C 0.37 8.66 7.43 -155.04 -1.15 7.51 16 14 N -0.66 -12.24 5.33 -12.28 -0.07 -12.30 16 15 C 0.52 9.99 7.74 -12.36 -0.10 9.90 16 16 O -0.39 -9.32 12.20 5.32 0.06 -9.25 16 17 C -0.22 -3.28 5.91 -104.70 -0.62 -3.90 16 18 C 0.17 2.12 10.81 -16.77 -0.18 1.94 16 19 N -0.52 -6.48 10.42 -14.24 -0.15 -6.63 16 20 C 0.30 3.44 12.27 -92.02 -1.13 2.31 16 21 N -0.52 -7.01 10.42 -14.24 -0.15 -7.16 16 22 C 0.20 2.91 10.88 -16.77 -0.18 2.73 16 23 N -0.47 -12.86 5.73 -10.27 -0.06 -12.92 16 24 H 0.27 6.76 8.29 -40.82 -0.34 6.42 16 25 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 28 H 0.40 5.53 6.85 -40.82 -0.28 5.25 16 29 H 0.17 1.59 6.55 -52.49 -0.34 1.24 16 30 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.18 2.60 7.74 -52.49 -0.41 2.19 16 LS Contribution 279.64 15.07 4.21 4.21 Total: -1.00 -32.15 279.64 -8.46 -40.61 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -2.27 Total: 6.72 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -5.52 Total: 0.08 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.08 Total: -56.14 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.15 -8.46 -40.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536309840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.403 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds