Wall clock time and date at job start Mon Mar 30 2020 00:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 119.99439 * 2 1 4 4 H 1.48503 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47630 * 299.99971 * 3 2 1 6 6 H 1.48504 * 109.47211 * 60.00189 * 3 2 1 7 7 C 1.40021 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.40612 * 119.79034 * 180.02562 * 9 7 2 11 11 C 1.38315 * 119.13290 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.66966 * 359.97438 * 11 10 9 13 13 C 1.39651 * 119.49900 * 0.02562 * 12 11 10 14 14 N 1.39177 * 119.57994 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00516 * 185.32776 * 14 13 12 16 16 O 1.21556 * 119.99370 * 354.85040 * 15 14 13 17 17 C 1.47789 * 120.00269 * 175.12928 * 15 14 13 18 18 C 1.39965 * 120.93888 * 359.71645 * 17 15 14 19 19 N 1.32143 * 118.91841 * 179.71884 * 18 17 15 20 20 C 1.31877 * 120.96910 * 0.56999 * 19 18 17 21 21 N 1.31869 * 122.09932 * 359.70622 * 20 19 18 22 22 C 1.32148 * 120.97061 * 359.97438 * 21 20 19 23 23 N 1.31947 * 120.84588 * 0.27426 * 13 12 11 24 24 H 0.96999 * 120.00351 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.43034 * 0.02562 * 10 9 7 26 26 H 1.08003 * 120.66167 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.24949 * 180.02562 * 12 11 10 28 28 H 0.96999 * 119.99544 * 5.32845 * 14 13 12 29 29 H 1.08001 * 120.54162 * 359.97438 * 18 17 15 30 30 H 1.07999 * 118.94672 * 179.71957 * 20 19 18 31 31 H 1.07994 * 120.53576 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3467 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3011 -2.4366 0.0005 10 6 2.0087 -3.6517 0.0016 11 6 1.3036 -4.8416 0.0022 12 6 -0.0825 -4.7936 0.0021 13 6 -0.7277 -3.5551 0.0010 14 7 -2.1185 -3.5050 0.0005 15 6 -2.7502 -2.3195 -0.1090 16 8 -2.1085 -1.2871 -0.1129 17 6 -4.2234 -2.2744 -0.2180 18 6 -4.9815 -3.4509 -0.2155 19 7 -6.2967 -3.3638 -0.3094 20 6 -6.8934 -2.1926 -0.4155 21 7 -6.2175 -1.0603 -0.4275 22 6 -4.8994 -1.0541 -0.3321 23 7 -0.0356 -2.4317 -0.0054 24 1 -0.4850 0.8400 -0.0004 25 1 3.0887 -3.6557 0.0029 26 1 1.8220 -5.7890 0.0026 27 1 -0.6585 -5.7073 0.0030 28 1 -2.6333 -4.3234 0.0788 29 1 -4.4997 -4.4141 -0.1340 30 1 -7.9699 -2.1596 -0.4949 31 1 -4.3530 -0.1227 -0.3422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536309840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:51 Heat of formation + Delta-G solvation = 58.405029 kcal Electronic energy + Delta-G solvation = -19547.257394 eV Core-core repulsion = 16408.284439 eV Total energy + Delta-G solvation = -3138.972955 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.21455 -40.79500 -39.19303 -36.07930 -35.10800 -34.65396 -33.35730 -32.20729 -30.82812 -27.60065 -26.33839 -25.58629 -23.83381 -23.09047 -21.39858 -19.84548 -18.85403 -18.73615 -18.07885 -17.57252 -16.42278 -16.32945 -16.25649 -15.61338 -15.49653 -15.34000 -14.71595 -14.64698 -14.48732 -13.97374 -13.74373 -12.91751 -12.73602 -12.65382 -12.54444 -12.31904 -11.97015 -11.74694 -11.59088 -10.92015 -10.86067 -10.74716 -10.39996 -9.90443 -9.15635 -8.86599 -8.06664 -6.41642 -0.58552 -0.08784 0.92962 1.25641 1.41262 1.52063 1.55069 2.07803 2.11279 2.26787 2.78628 3.01512 3.03953 3.11103 3.38204 3.66822 3.84553 4.05260 4.31979 4.40529 4.65942 4.76213 4.87692 4.96726 5.03542 5.22040 5.27745 5.67339 5.74459 5.80100 5.93285 6.13647 6.34787 6.64895 6.80354 6.90117 7.06804 7.49867 8.31477 8.56032 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.006224 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.736482 B = 4497.436140 C = 5934.689323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.465 4.465 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.327 4.327 11 C -0.034 4.034 12 C -0.341 4.341 13 C 0.348 3.652 14 N -0.645 5.645 15 C 0.520 3.480 16 O -0.446 6.446 17 C -0.235 4.235 18 C 0.189 3.811 19 N -0.528 5.528 20 C 0.308 3.692 21 N -0.534 5.534 22 C 0.198 3.802 23 N -0.508 5.508 24 H 0.271 0.729 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.421 0.579 29 H 0.200 0.800 30 H 0.238 0.762 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 -5.405 -0.341 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.212 4.212 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.496 4.496 8 H 0.103 0.897 9 C 0.112 3.888 10 C -0.349 4.349 11 C -0.058 4.058 12 C -0.366 4.366 13 C 0.110 3.890 14 N -0.295 5.295 15 C 0.303 3.697 16 O -0.313 6.313 17 C -0.243 4.243 18 C 0.022 3.978 19 N -0.241 5.241 20 C 0.022 3.978 21 N -0.248 5.248 22 C 0.032 3.968 23 N -0.228 5.228 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.259 0.741 29 H 0.217 0.783 30 H 0.254 0.746 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.113 -3.621 -0.442 12.650 hybrid contribution 1.658 -0.427 0.114 1.715 sum -10.455 -4.047 -0.328 11.216 Atomic orbital electron populations 1.70485 1.07261 1.28032 1.25403 1.26983 0.96007 1.03883 0.94316 0.85292 0.79610 0.77248 0.78383 1.17865 1.19618 1.19591 1.19932 0.94473 0.90478 1.44685 0.89673 1.18850 0.87863 0.93400 0.88711 1.21826 0.99263 0.93853 1.20007 1.21052 0.93597 0.97342 0.93840 1.20984 0.95182 0.95701 1.24760 1.19035 0.84638 0.91272 0.94103 1.43099 1.03950 1.09894 1.72527 1.18592 0.86863 0.84910 0.79374 1.91254 1.65808 1.32317 1.41875 1.21809 0.94869 0.98022 1.09591 1.23896 0.89414 0.98411 0.86069 1.68577 1.10815 1.29836 1.14865 1.25999 1.02974 0.82074 0.86765 1.68630 1.07951 1.32719 1.15488 1.23488 0.89927 0.98120 0.85300 1.68631 1.07456 1.25425 1.21267 0.91778 0.87782 0.84422 0.84597 0.74054 0.78302 0.74640 0.81080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -38.95 8.98 21.84 0.20 -38.75 16 2 C 0.01 0.72 5.50 85.29 0.47 1.19 16 3 Si 0.97 40.16 29.56 68.60 2.03 42.19 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.46 -26.08 9.14 23.46 0.21 -25.87 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.47 16 9 C 0.24 13.43 6.55 40.20 0.26 13.69 16 10 C -0.33 -16.09 9.83 22.87 0.22 -15.87 16 11 C -0.03 -1.43 10.15 22.40 0.23 -1.20 16 12 C -0.34 -13.80 9.95 22.72 0.23 -13.57 16 13 C 0.35 16.14 7.43 133.26 0.99 17.13 16 14 N -0.65 -23.33 5.33 -311.05 -1.66 -24.99 16 15 C 0.52 20.17 7.74 86.77 0.67 20.84 16 16 O -0.45 -22.16 12.20 -3.89 -0.05 -22.20 16 17 C -0.23 -6.83 5.91 -19.91 -0.12 -6.94 16 18 C 0.19 4.17 10.81 85.06 0.92 5.08 16 19 N -0.53 -11.26 10.42 -198.96 -2.07 -13.34 16 20 C 0.31 6.16 12.27 180.84 2.22 8.38 16 21 N -0.53 -13.51 10.42 -198.96 -2.07 -15.59 16 22 C 0.20 5.73 10.88 85.06 0.93 6.65 16 23 N -0.51 -28.43 5.73 -186.41 -1.07 -29.49 16 24 H 0.27 14.27 8.29 -92.71 -0.77 13.50 16 25 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 26 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 28 H 0.42 10.52 6.85 -92.71 -0.63 9.89 16 29 H 0.20 2.96 6.55 -2.91 -0.02 2.94 16 30 H 0.24 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.17 5.21 7.74 -2.91 -0.02 5.19 16 Total: -1.00 -73.35 279.64 3.09 -70.26 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.56 Total: 22.41 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.23 Total: 9.51 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -6.68 Total: -122.16 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -73.35 3.09 -70.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536309840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.665 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds