Wall clock time and date at job start Mon Mar 30 2020 00:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86792 * 119.99930 * 2 1 4 4 H 1.48502 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47511 * 300.00314 * 3 2 1 6 6 H 1.48504 * 109.47201 * 60.00473 * 3 2 1 7 7 C 1.39092 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99678 * 207.58447 * 7 2 1 9 9 N 1.36846 * 120.00067 * 27.58705 * 7 2 1 10 10 C 1.34782 * 120.00144 * 47.51158 * 9 7 2 11 11 O 1.21532 * 119.99797 * 4.55617 * 10 9 7 12 12 C 1.48205 * 120.00218 * 184.55819 * 10 9 7 13 13 C 1.39685 * 120.56128 * 173.24745 * 12 10 9 14 14 C 1.38678 * 118.25270 * 179.97438 * 13 12 10 15 15 N 1.32243 * 119.16457 * 359.97438 * 14 13 12 16 16 C 1.31894 * 121.06111 * 0.02562 * 15 14 13 17 17 N 1.31570 * 121.92932 * 359.97438 * 16 15 14 18 18 C 1.39364 * 120.00224 * 227.50424 * 9 7 2 19 19 C 1.39075 * 119.70115 * 261.36677 * 18 9 7 20 20 C 1.38378 * 119.09696 * 179.79230 * 19 18 9 21 21 C 1.38830 * 118.49251 * 0.46990 * 20 19 18 22 22 C 1.38152 * 119.31135 * 359.75032 * 21 20 19 23 23 N 1.31873 * 120.85650 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00032 * 4.93461 * 1 2 3 25 25 H 1.07998 * 120.87488 * 359.97438 * 13 12 10 26 26 H 1.08002 * 120.41692 * 180.02562 * 14 13 12 27 27 H 1.08010 * 119.03448 * 180.27625 * 16 15 14 28 28 H 1.08007 * 120.44952 * 359.97438 * 19 18 9 29 29 H 1.08000 * 120.75482 * 180.22005 * 20 19 18 30 30 H 1.07999 * 120.34082 * 179.72322 * 21 20 19 31 31 H 1.07993 * 119.57272 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8882 2.3965 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0084 -1.2046 -0.0005 8 1 2.9962 -1.2579 0.4325 9 7 1.4408 -2.3221 -0.5499 10 6 0.8625 -2.2561 -1.7655 11 8 0.9174 -1.2268 -2.4094 12 6 0.1597 -3.4386 -2.3170 13 6 -0.5623 -3.3437 -3.5091 14 6 -1.2011 -4.4802 -3.9819 15 7 -1.1057 -5.6060 -3.2948 16 6 -0.4156 -5.6618 -2.1721 17 7 0.2068 -4.6099 -1.6850 18 6 1.4608 -3.5285 0.1476 19 6 2.4252 -4.4837 -0.1553 20 6 2.4362 -5.6753 0.5480 21 6 1.4724 -5.8755 1.5271 22 6 0.5413 -4.8847 1.7721 23 7 0.5580 -3.7569 1.0889 24 1 -0.4850 0.8369 -0.0723 25 1 -0.6215 -2.4098 -4.0483 26 1 -1.7686 -4.4464 -4.9002 27 1 -0.3557 -6.5996 -1.6396 28 1 3.1574 -4.2966 -0.9269 29 1 3.1752 -6.4342 0.3373 30 1 1.4506 -6.7963 2.0910 31 1 -0.2105 -5.0361 2.5324 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537821388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:31 Heat of formation + Delta-G solvation = 85.359444 kcal Electronic energy + Delta-G solvation = -20425.773497 eV Core-core repulsion = 17287.969373 eV Total energy + Delta-G solvation = -3137.804124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76184 -39.50837 -37.92666 -34.56065 -33.43723 -32.11312 -31.63670 -31.53662 -29.14779 -26.05267 -24.26727 -23.85205 -22.75622 -22.48623 -20.32421 -17.86584 -17.69293 -16.95608 -15.85446 -15.65615 -15.13114 -15.03415 -14.69980 -14.53493 -14.15704 -13.98636 -13.33900 -13.06750 -12.84479 -12.66135 -12.47470 -11.67460 -11.36736 -11.05614 -10.87962 -10.60409 -10.35944 -10.29122 -9.36959 -9.32544 -9.16544 -9.10402 -8.88742 -8.54075 -7.98076 -7.53128 -6.38928 -4.14528 1.02563 1.28008 1.86479 2.04274 3.22759 3.34163 3.36402 3.64698 3.98096 4.32041 4.38701 4.46203 4.54650 4.67883 4.87488 5.12703 5.33986 5.35491 5.39753 5.42646 5.67211 5.83971 5.87944 5.92073 6.24960 6.36511 6.63461 6.74752 6.77066 7.19334 7.28389 7.46596 8.03286 8.32183 8.62185 8.80127 8.95046 9.29633 9.82307 10.66322 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.009176 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.976046 B = 3050.683166 C = 4225.800442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.350 4.350 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.532 3.468 11 O -0.527 6.527 12 C 0.158 3.842 13 C -0.182 4.182 14 C 0.139 3.861 15 N -0.526 5.526 16 C 0.285 3.715 17 N -0.489 5.489 18 C 0.397 3.603 19 C -0.153 4.153 20 C -0.073 4.073 21 C -0.202 4.202 22 C 0.108 3.892 23 N -0.474 5.474 24 H 0.270 0.730 25 H 0.154 0.846 26 H 0.167 0.833 27 H 0.190 0.810 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 -10.724 -2.095 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.130 4.130 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.475 4.475 8 H 0.108 0.892 9 N -0.096 5.096 10 C 0.319 3.681 11 O -0.404 6.404 12 C 0.010 3.990 13 C -0.205 4.205 14 C -0.027 4.027 15 N -0.242 5.242 16 C -0.003 4.003 17 N -0.205 5.205 18 C 0.172 3.828 19 C -0.176 4.176 20 C -0.100 4.100 21 C -0.222 4.222 22 C -0.051 4.051 23 N -0.186 5.186 24 H 0.081 0.919 25 H 0.172 0.828 26 H 0.185 0.815 27 H 0.206 0.794 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.049 -10.217 -1.687 10.355 hybrid contribution 0.638 0.784 -0.507 1.131 sum 0.688 -9.433 -2.195 9.709 Atomic orbital electron populations 1.69997 1.07035 1.28718 1.38572 1.25376 0.94641 1.00207 0.92761 0.86148 0.80424 0.81849 0.77697 1.18979 1.20078 1.20935 1.19093 0.99530 0.85439 1.43454 0.89229 1.40655 1.50542 1.06617 1.11790 1.17516 0.83156 0.85741 0.81693 1.90625 1.60532 1.30247 1.58957 1.22362 0.92488 0.92944 0.91242 1.22922 0.98218 1.01662 0.97714 1.23134 0.93956 0.87537 0.98061 1.68284 1.18534 1.28766 1.08582 1.24833 0.88870 0.97122 0.89508 1.68752 1.19499 0.99570 1.32697 1.18687 0.88640 0.86346 0.89153 1.21808 0.99818 0.94627 1.01313 1.21175 0.97595 0.96239 0.94979 1.21835 0.98520 1.00762 1.01111 1.22416 0.96913 0.88849 0.96914 1.67520 1.23106 1.21201 1.06725 0.91942 0.82813 0.81538 0.79374 0.86234 0.86059 0.86130 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.76 12.89 55.50 0.72 -23.05 16 2 C 0.08 2.35 4.13 -17.46 -0.07 2.28 16 3 Si 0.91 21.44 29.64 -169.99 -5.04 16.40 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.73 8.98 -15.00 -0.13 -9.87 16 8 H 0.09 2.40 7.97 -52.49 -0.42 1.98 16 9 N -0.38 -9.90 2.57 -61.60 -0.16 -10.06 16 10 C 0.53 13.81 6.97 -12.16 -0.08 13.73 16 11 O -0.53 -14.91 15.09 5.34 0.08 -14.83 16 12 C 0.16 3.41 6.68 -82.65 -0.55 2.86 16 13 C -0.18 -3.29 9.72 -38.88 -0.38 -3.66 16 14 C 0.14 2.07 11.30 -17.21 -0.19 1.87 16 15 N -0.53 -8.34 10.42 -14.61 -0.15 -8.49 16 16 C 0.29 4.66 12.27 -92.26 -1.13 3.53 16 17 N -0.49 -9.53 6.31 -11.15 -0.07 -9.60 16 18 C 0.40 9.09 3.71 -154.69 -0.57 8.52 16 19 C -0.15 -2.90 8.58 -39.22 -0.34 -3.23 16 20 C -0.07 -1.11 10.17 -39.31 -0.40 -1.51 16 21 C -0.20 -2.94 10.11 -39.39 -0.40 -3.34 16 22 C 0.11 1.90 11.18 -17.57 -0.20 1.70 16 23 N -0.47 -10.77 10.33 -12.35 -0.13 -10.90 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.15 2.66 7.75 -52.49 -0.41 2.26 16 26 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 27 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 28 H 0.12 2.19 8.06 -52.48 -0.42 1.76 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 284.75 15.07 4.29 4.29 Total: -1.00 -33.74 284.75 -7.41 -41.15 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.50 Total: 2.22 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -4.45 Total: 12.86 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.21 Total: -62.10 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.04 Total: 16.40 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.74 -7.41 -41.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.514 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds