Wall clock time and date at job start Mon Mar 30 2020 00:47:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31296 * 1
3 3 Si 1.86792 * 119.99930 * 2 1
4 4 H 1.48502 * 109.47266 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.47511 * 300.00314 * 3 2 1
6 6 H 1.48504 * 109.47201 * 60.00473 * 3 2 1
7 7 C 1.39092 * 119.99738 * 180.02562 * 2 1 3
8 8 H 1.07993 * 119.99678 * 207.58447 * 7 2 1
9 9 N 1.36846 * 120.00067 * 27.58705 * 7 2 1
10 10 C 1.34782 * 120.00144 * 47.51158 * 9 7 2
11 11 O 1.21532 * 119.99797 * 4.55617 * 10 9 7
12 12 C 1.48205 * 120.00218 * 184.55819 * 10 9 7
13 13 C 1.39685 * 120.56128 * 173.24745 * 12 10 9
14 14 C 1.38678 * 118.25270 * 179.97438 * 13 12 10
15 15 N 1.32243 * 119.16457 * 359.97438 * 14 13 12
16 16 C 1.31894 * 121.06111 * 0.02562 * 15 14 13
17 17 N 1.31570 * 121.92932 * 359.97438 * 16 15 14
18 18 C 1.39364 * 120.00224 * 227.50424 * 9 7 2
19 19 C 1.39075 * 119.70115 * 261.36677 * 18 9 7
20 20 C 1.38378 * 119.09696 * 179.79230 * 19 18 9
21 21 C 1.38830 * 118.49251 * 0.46990 * 20 19 18
22 22 C 1.38152 * 119.31135 * 359.75032 * 21 20 19
23 23 N 1.31873 * 120.85650 * 0.02562 * 22 21 20
24 24 H 0.96998 * 120.00032 * 4.93461 * 1 2 3
25 25 H 1.07998 * 120.87488 * 359.97438 * 13 12 10
26 26 H 1.08002 * 120.41692 * 180.02562 * 14 13 12
27 27 H 1.08010 * 119.03448 * 180.27625 * 16 15 14
28 28 H 1.08007 * 120.44952 * 359.97438 * 19 18 9
29 29 H 1.08000 * 120.75482 * 180.22005 * 20 19 18
30 30 H 1.07999 * 120.34082 * 179.72322 * 21 20 19
31 31 H 1.07993 * 119.57272 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3130 0.0000 0.0000
3 14 2.2469 1.6177 0.0000
4 1 3.7069 1.3464 -0.0006
5 1 1.8882 2.3965 -1.2124
6 1 1.8882 2.3964 1.2126
7 6 2.0084 -1.2046 -0.0005
8 1 2.9962 -1.2579 0.4325
9 7 1.4408 -2.3221 -0.5499
10 6 0.8625 -2.2561 -1.7655
11 8 0.9174 -1.2268 -2.4094
12 6 0.1597 -3.4386 -2.3170
13 6 -0.5623 -3.3437 -3.5091
14 6 -1.2011 -4.4802 -3.9819
15 7 -1.1057 -5.6060 -3.2948
16 6 -0.4156 -5.6618 -2.1721
17 7 0.2068 -4.6099 -1.6850
18 6 1.4608 -3.5285 0.1476
19 6 2.4252 -4.4837 -0.1553
20 6 2.4362 -5.6753 0.5480
21 6 1.4724 -5.8755 1.5271
22 6 0.5413 -4.8847 1.7721
23 7 0.5580 -3.7569 1.0889
24 1 -0.4850 0.8369 -0.0723
25 1 -0.6215 -2.4098 -4.0483
26 1 -1.7686 -4.4464 -4.9002
27 1 -0.3557 -6.5996 -1.6396
28 1 3.1574 -4.2966 -0.9269
29 1 3.1752 -6.4342 0.3373
30 1 1.4506 -6.7963 2.0910
31 1 -0.2105 -5.0361 2.5324
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001537821388.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:47:31
Heat of formation + Delta-G solvation = 85.359444 kcal
Electronic energy + Delta-G solvation = -20425.773497 eV
Core-core repulsion = 17287.969373 eV
Total energy + Delta-G solvation = -3137.804124 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 270.086 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.76184 -39.50837 -37.92666 -34.56065 -33.43723 -32.11312 -31.63670 -31.53662
-29.14779 -26.05267 -24.26727 -23.85205 -22.75622 -22.48623 -20.32421 -17.86584
-17.69293 -16.95608 -15.85446 -15.65615 -15.13114 -15.03415 -14.69980 -14.53493
-14.15704 -13.98636 -13.33900 -13.06750 -12.84479 -12.66135 -12.47470 -11.67460
-11.36736 -11.05614 -10.87962 -10.60409 -10.35944 -10.29122 -9.36959 -9.32544
-9.16544 -9.10402 -8.88742 -8.54075 -7.98076 -7.53128 -6.38928 -4.14528
1.02563 1.28008 1.86479 2.04274 3.22759 3.34163 3.36402 3.64698
3.98096 4.32041 4.38701 4.46203 4.54650 4.67883 4.87488 5.12703
5.33986 5.35491 5.39753 5.42646 5.67211 5.83971 5.87944 5.92073
6.24960 6.36511 6.63461 6.74752 6.77066 7.19334 7.28389 7.46596
8.03286 8.32183 8.62185 8.80127 8.95046 9.29633 9.82307 10.66322
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.017174 B = 0.009176 C = 0.006624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1629.976046 B = 3050.683166 C = 4225.800442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.813 5.813
2 C 0.084 3.916
3 Si 0.914 3.086
4 H -0.266 1.266
5 H -0.275 1.275
6 H -0.283 1.283
7 C -0.350 4.350
8 H 0.090 0.910
9 N -0.378 5.378
10 C 0.532 3.468
11 O -0.527 6.527
12 C 0.158 3.842
13 C -0.182 4.182
14 C 0.139 3.861
15 N -0.526 5.526
16 C 0.285 3.715
17 N -0.489 5.489
18 C 0.397 3.603
19 C -0.153 4.153
20 C -0.073 4.073
21 C -0.202 4.202
22 C 0.108 3.892
23 N -0.474 5.474
24 H 0.270 0.730
25 H 0.154 0.846
26 H 0.167 0.833
27 H 0.190 0.810
28 H 0.120 0.880
29 H 0.121 0.879
30 H 0.121 0.879
31 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.749 -10.724 -2.095 10.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.443 5.443
2 C -0.130 4.130
3 Si 0.739 3.261
4 H -0.190 1.190
5 H -0.201 1.201
6 H -0.209 1.209
7 C -0.475 4.475
8 H 0.108 0.892
9 N -0.096 5.096
10 C 0.319 3.681
11 O -0.404 6.404
12 C 0.010 3.990
13 C -0.205 4.205
14 C -0.027 4.027
15 N -0.242 5.242
16 C -0.003 4.003
17 N -0.205 5.205
18 C 0.172 3.828
19 C -0.176 4.176
20 C -0.100 4.100
21 C -0.222 4.222
22 C -0.051 4.051
23 N -0.186 5.186
24 H 0.081 0.919
25 H 0.172 0.828
26 H 0.185 0.815
27 H 0.206 0.794
28 H 0.138 0.862
29 H 0.139 0.861
30 H 0.139 0.861
31 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 0.049 -10.217 -1.687 10.355
hybrid contribution 0.638 0.784 -0.507 1.131
sum 0.688 -9.433 -2.195 9.709
Atomic orbital electron populations
1.69997 1.07035 1.28718 1.38572 1.25376 0.94641 1.00207 0.92761
0.86148 0.80424 0.81849 0.77697 1.18979 1.20078 1.20935 1.19093
0.99530 0.85439 1.43454 0.89229 1.40655 1.50542 1.06617 1.11790
1.17516 0.83156 0.85741 0.81693 1.90625 1.60532 1.30247 1.58957
1.22362 0.92488 0.92944 0.91242 1.22922 0.98218 1.01662 0.97714
1.23134 0.93956 0.87537 0.98061 1.68284 1.18534 1.28766 1.08582
1.24833 0.88870 0.97122 0.89508 1.68752 1.19499 0.99570 1.32697
1.18687 0.88640 0.86346 0.89153 1.21808 0.99818 0.94627 1.01313
1.21175 0.97595 0.96239 0.94979 1.21835 0.98520 1.00762 1.01111
1.22416 0.96913 0.88849 0.96914 1.67520 1.23106 1.21201 1.06725
0.91942 0.82813 0.81538 0.79374 0.86234 0.86059 0.86130 0.84161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -23.76 12.89 55.50 0.72 -23.05 16
2 C 0.08 2.35 4.13 -17.46 -0.07 2.28 16
3 Si 0.91 21.44 29.64 -169.99 -5.04 16.40 16
4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16
5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
7 C -0.35 -9.73 8.98 -15.00 -0.13 -9.87 16
8 H 0.09 2.40 7.97 -52.49 -0.42 1.98 16
9 N -0.38 -9.90 2.57 -61.60 -0.16 -10.06 16
10 C 0.53 13.81 6.97 -12.16 -0.08 13.73 16
11 O -0.53 -14.91 15.09 5.34 0.08 -14.83 16
12 C 0.16 3.41 6.68 -82.65 -0.55 2.86 16
13 C -0.18 -3.29 9.72 -38.88 -0.38 -3.66 16
14 C 0.14 2.07 11.30 -17.21 -0.19 1.87 16
15 N -0.53 -8.34 10.42 -14.61 -0.15 -8.49 16
16 C 0.29 4.66 12.27 -92.26 -1.13 3.53 16
17 N -0.49 -9.53 6.31 -11.15 -0.07 -9.60 16
18 C 0.40 9.09 3.71 -154.69 -0.57 8.52 16
19 C -0.15 -2.90 8.58 -39.22 -0.34 -3.23 16
20 C -0.07 -1.11 10.17 -39.31 -0.40 -1.51 16
21 C -0.20 -2.94 10.11 -39.39 -0.40 -3.34 16
22 C 0.11 1.90 11.18 -17.57 -0.20 1.70 16
23 N -0.47 -10.77 10.33 -12.35 -0.13 -10.90 16
24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16
25 H 0.15 2.66 7.75 -52.49 -0.41 2.26 16
26 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16
27 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16
28 H 0.12 2.19 8.06 -52.48 -0.42 1.76 16
29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16
30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16
31 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16
LS Contribution 284.75 15.07 4.29 4.29
Total: -1.00 -33.74 284.75 -7.41 -41.15
By element:
Atomic # 1 Polarization: 4.72 SS G_CDS: -2.50 Total: 2.22 kcal
Atomic # 6 Polarization: 17.31 SS G_CDS: -4.45 Total: 12.86 kcal
Atomic # 7 Polarization: -62.31 SS G_CDS: 0.21 Total: -62.10 kcal
Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.04 Total: 16.40 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -33.74 -7.41 -41.15 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001537821388.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.514 kcal
(2) G-P(sol) polarization free energy of solvation -33.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) 85.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds