Wall clock time and date at job start Mon Mar 30 2020 00:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86792 * 119.99930 * 2 1 4 4 H 1.48502 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47511 * 300.00314 * 3 2 1 6 6 H 1.48504 * 109.47201 * 60.00473 * 3 2 1 7 7 C 1.39092 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99678 * 207.58447 * 7 2 1 9 9 N 1.36846 * 120.00067 * 27.58705 * 7 2 1 10 10 C 1.34782 * 120.00144 * 47.51158 * 9 7 2 11 11 O 1.21532 * 119.99797 * 4.55617 * 10 9 7 12 12 C 1.48205 * 120.00218 * 184.55819 * 10 9 7 13 13 C 1.39685 * 120.56128 * 173.24745 * 12 10 9 14 14 C 1.38678 * 118.25270 * 179.97438 * 13 12 10 15 15 N 1.32243 * 119.16457 * 359.97438 * 14 13 12 16 16 C 1.31894 * 121.06111 * 0.02562 * 15 14 13 17 17 N 1.31570 * 121.92932 * 359.97438 * 16 15 14 18 18 C 1.39364 * 120.00224 * 227.50424 * 9 7 2 19 19 C 1.39075 * 119.70115 * 261.36677 * 18 9 7 20 20 C 1.38378 * 119.09696 * 179.79230 * 19 18 9 21 21 C 1.38830 * 118.49251 * 0.46990 * 20 19 18 22 22 C 1.38152 * 119.31135 * 359.75032 * 21 20 19 23 23 N 1.31873 * 120.85650 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00032 * 4.93461 * 1 2 3 25 25 H 1.07998 * 120.87488 * 359.97438 * 13 12 10 26 26 H 1.08002 * 120.41692 * 180.02562 * 14 13 12 27 27 H 1.08010 * 119.03448 * 180.27625 * 16 15 14 28 28 H 1.08007 * 120.44952 * 359.97438 * 19 18 9 29 29 H 1.08000 * 120.75482 * 180.22005 * 20 19 18 30 30 H 1.07999 * 120.34082 * 179.72322 * 21 20 19 31 31 H 1.07993 * 119.57272 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8882 2.3965 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0084 -1.2046 -0.0005 8 1 2.9962 -1.2579 0.4325 9 7 1.4408 -2.3221 -0.5499 10 6 0.8625 -2.2561 -1.7655 11 8 0.9174 -1.2268 -2.4094 12 6 0.1597 -3.4386 -2.3170 13 6 -0.5623 -3.3437 -3.5091 14 6 -1.2011 -4.4802 -3.9819 15 7 -1.1057 -5.6060 -3.2948 16 6 -0.4156 -5.6618 -2.1721 17 7 0.2068 -4.6099 -1.6850 18 6 1.4608 -3.5285 0.1476 19 6 2.4252 -4.4837 -0.1553 20 6 2.4362 -5.6753 0.5480 21 6 1.4724 -5.8755 1.5271 22 6 0.5413 -4.8847 1.7721 23 7 0.5580 -3.7569 1.0889 24 1 -0.4850 0.8369 -0.0723 25 1 -0.6215 -2.4098 -4.0483 26 1 -1.7686 -4.4464 -4.9002 27 1 -0.3557 -6.5996 -1.6396 28 1 3.1574 -4.2966 -0.9269 29 1 3.1752 -6.4342 0.3373 30 1 1.4506 -6.7963 2.0910 31 1 -0.2105 -5.0361 2.5324 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537821388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:30 Heat of formation + Delta-G solvation = 62.855035 kcal Electronic energy + Delta-G solvation = -20426.749361 eV Core-core repulsion = 17287.969373 eV Total energy + Delta-G solvation = -3138.779989 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.22035 -40.99247 -39.65863 -36.40844 -34.91961 -33.94899 -33.05552 -32.96699 -30.66882 -27.87039 -25.88689 -25.24789 -24.12368 -24.01316 -22.01305 -19.61557 -19.31269 -18.37786 -17.43516 -17.09630 -16.64424 -16.48706 -16.39476 -16.04925 -15.91350 -15.44036 -14.82525 -14.66394 -14.53965 -14.10217 -13.76599 -13.58735 -13.13349 -12.80955 -12.59316 -12.15545 -11.97200 -11.75688 -11.13909 -10.95336 -10.74188 -10.51586 -10.47100 -10.23271 -9.58952 -9.24057 -8.43709 -6.25470 -0.46908 -0.00769 0.48065 0.71819 1.32661 1.41213 1.51237 1.94228 2.25620 2.59386 2.89698 2.98783 3.11997 3.19282 3.24158 3.58218 3.86343 4.02893 4.07993 4.24015 4.49298 4.51954 4.56385 4.61587 4.86982 5.03507 5.32438 5.33167 5.43499 5.46965 5.81832 5.93288 6.12252 6.70042 6.79415 7.02249 7.28791 7.53073 7.91137 8.62256 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.009176 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.976046 B = 3050.683166 C = 4225.800442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.393 5.393 10 C 0.521 3.479 11 O -0.572 6.572 12 C 0.125 3.875 13 C -0.188 4.188 14 C 0.163 3.837 15 N -0.519 5.519 16 C 0.285 3.715 17 N -0.497 5.497 18 C 0.364 3.636 19 C -0.161 4.161 20 C -0.058 4.058 21 C -0.172 4.172 22 C 0.093 3.907 23 N -0.526 5.526 24 H 0.268 0.732 25 H 0.153 0.847 26 H 0.218 0.782 27 H 0.225 0.775 28 H 0.114 0.886 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -14.156 -2.072 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.171 4.171 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.501 4.501 8 H 0.102 0.898 9 N -0.111 5.111 10 C 0.309 3.691 11 O -0.452 6.452 12 C -0.022 4.022 13 C -0.211 4.211 14 C -0.005 4.005 15 N -0.233 5.233 16 C -0.003 4.003 17 N -0.214 5.214 18 C 0.139 3.861 19 C -0.183 4.183 20 C -0.084 4.084 21 C -0.192 4.192 22 C -0.065 4.065 23 N -0.239 5.239 24 H 0.078 0.922 25 H 0.170 0.830 26 H 0.234 0.766 27 H 0.241 0.759 28 H 0.132 0.868 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.188 -13.684 -1.619 13.781 hybrid contribution 0.559 1.550 -0.521 1.728 sum 0.748 -12.134 -2.140 12.344 Atomic orbital electron populations 1.70085 1.08540 1.29172 1.41325 1.26253 0.95288 1.03318 0.92211 0.85232 0.79699 0.77761 0.77622 1.17728 1.20821 1.19544 1.19277 0.99806 0.87162 1.43831 0.89760 1.40777 1.50434 1.07588 1.12297 1.18230 0.82504 0.86696 0.81669 1.90548 1.62141 1.32297 1.60258 1.21890 0.94638 0.92626 0.93024 1.23076 0.98256 1.03107 0.96649 1.23858 0.92170 0.85664 0.98770 1.68436 1.17808 1.28742 1.08330 1.25555 0.87757 0.97313 0.89689 1.68709 1.20392 0.99388 1.32895 1.18692 0.90706 0.86291 0.90376 1.21817 0.98970 0.95502 1.02040 1.21658 0.98063 0.95217 0.93486 1.22304 0.95952 1.01216 0.99728 1.22943 0.98436 0.88233 0.96918 1.67336 1.24495 1.24080 1.07944 0.92212 0.82972 0.76558 0.75898 0.86821 0.81536 0.81049 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.20 12.89 21.68 0.28 -52.92 16 2 C 0.04 2.26 4.13 84.98 0.35 2.61 16 3 Si 0.97 46.09 29.64 68.60 2.03 48.12 16 4 H -0.25 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.38 -22.07 8.98 84.12 0.76 -21.32 16 8 H 0.08 4.81 7.97 -2.91 -0.02 4.79 16 9 N -0.39 -21.73 2.57 -467.08 -1.20 -22.93 16 10 C 0.52 28.58 6.97 86.89 0.61 29.19 16 11 O -0.57 -34.57 15.09 -3.82 -0.06 -34.63 16 12 C 0.12 5.52 6.68 41.94 0.28 5.80 16 13 C -0.19 -6.74 9.72 22.72 0.22 -6.52 16 14 C 0.16 4.36 11.30 84.74 0.96 5.32 16 15 N -0.52 -14.65 10.42 -200.12 -2.09 -16.74 16 16 C 0.28 8.51 12.27 180.92 2.22 10.73 16 17 N -0.50 -19.03 6.31 -189.20 -1.19 -20.22 16 18 C 0.36 17.02 3.71 132.92 0.49 17.51 16 19 C -0.16 -5.98 8.58 22.50 0.19 -5.79 16 20 C -0.06 -1.53 10.17 22.44 0.23 -1.30 16 21 C -0.17 -4.23 10.11 22.39 0.23 -4.00 16 22 C 0.09 3.07 11.18 84.67 0.95 4.02 16 23 N -0.53 -24.19 10.33 -192.99 -1.99 -26.18 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.15 5.41 7.75 -2.91 -0.02 5.39 16 26 H 0.22 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.22 4.86 8.06 -2.91 -0.02 4.84 16 28 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -80.97 284.75 4.42 -76.55 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.16 Total: 12.71 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 7.48 Total: 36.25 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -6.19 Total: -139.00 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.06 Total: -34.63 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -80.97 4.42 -76.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.403 kcal (2) G-P(sol) polarization free energy of solvation -80.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds