Wall clock time and date at job start Mon Mar 30 2020 00:47:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31278 * 1
3 3 Si 1.86797 * 120.00214 * 2 1
4 4 H 1.48507 * 109.46754 * 269.99396 * 3 2 1
5 5 H 1.48497 * 109.47484 * 29.99581 * 3 2 1
6 6 H 1.48499 * 109.47151 * 149.99932 * 3 2 1
7 7 C 1.39183 * 119.99515 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00370 * 0.02562 * 7 2 1
9 9 N 1.36685 * 119.99919 * 180.02562 * 7 2 1
10 10 C 1.34773 * 120.00343 * 180.02562 * 9 7 2
11 11 O 1.21542 * 119.99656 * 359.97438 * 10 9 7
12 12 C 1.48250 * 120.00488 * 179.97438 * 10 9 7
13 13 C 1.39755 * 120.52027 * 179.97438 * 12 10 9
14 14 C 1.38776 * 118.41298 * 179.72429 * 13 12 10
15 15 N 1.32105 * 119.24905 * 359.97438 * 14 13 12
16 16 C 1.32644 * 120.98687 * 0.02562 * 15 14 13
17 17 C 1.48426 * 119.13126 * 180.02562 * 16 15 14
18 18 C 1.39260 * 119.71850 * 359.97438 * 17 16 15
19 19 C 1.38485 * 119.06819 * 180.02562 * 18 17 16
20 20 C 1.38709 * 118.49759 * 0.02562 * 19 18 17
21 21 C 1.38353 * 119.35293 * 0.02562 * 20 19 18
22 22 N 1.31680 * 120.88902 * 359.71378 * 21 20 19
23 23 N 1.32346 * 121.73790 * 359.97438 * 16 15 14
24 24 H 0.97002 * 119.99570 * 0.02562 * 1 2 3
25 25 H 0.97002 * 119.99537 * 0.02562 * 9 7 2
26 26 H 1.08000 * 120.79341 * 359.74539 * 13 12 10
27 27 H 1.07995 * 120.37252 * 179.97438 * 14 13 12
28 28 H 1.08006 * 120.46874 * 0.02562 * 18 17 16
29 29 H 1.07996 * 120.75049 * 180.02562 * 19 18 17
30 30 H 1.08004 * 120.32444 * 180.02562 * 20 19 18
31 31 H 1.07997 * 119.55960 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3128 0.0000 0.0000
3 14 2.2468 1.6177 0.0000
4 1 2.4944 2.0462 -1.4002
5 1 1.4443 2.6527 0.6999
6 1 3.5444 1.4401 0.7000
7 6 2.0086 -1.2054 0.0005
8 1 1.4686 -2.1407 0.0005
9 7 3.3754 -1.2055 0.0011
10 6 4.0493 -2.3727 0.0011
11 8 3.4415 -3.4252 0.0011
12 6 5.5318 -2.3728 0.0011
13 6 6.2414 -3.5768 0.0016
14 6 7.6282 -3.5259 -0.0043
15 7 8.2310 -2.3504 -0.0107
16 6 7.5307 -1.2239 -0.0111
17 6 8.2503 0.0742 -0.0190
18 6 9.6428 0.0916 -0.0253
19 6 10.3005 1.3103 -0.0321
20 6 9.5420 2.4716 -0.0318
21 6 8.1615 2.3800 -0.0242
22 7 7.5618 1.2077 -0.0229
23 7 6.2073 -1.2269 -0.0056
24 1 -0.4849 0.8401 -0.0004
25 1 3.8604 -0.3655 0.0014
26 1 5.7229 -4.5242 0.0062
27 1 8.2081 -4.4370 -0.0036
28 1 10.2021 -0.8324 -0.0249
29 1 11.3795 1.3555 -0.0376
30 1 10.0243 3.4380 -0.0374
31 1 7.5677 3.2821 -0.0243
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001542735351.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:47:08
Heat of formation + Delta-G solvation = 35.605261 kcal
Electronic energy + Delta-G solvation = -19133.385976 eV
Core-core repulsion = 15993.424349 eV
Total energy + Delta-G solvation = -3139.961627 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 270.086 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-42.30885 -40.88270 -40.00542 -36.31623 -35.04453 -34.20221 -33.88465 -33.33019
-31.32742 -28.06843 -26.20972 -25.81528 -24.20326 -23.34369 -21.73670 -20.86587
-19.07704 -18.73530 -17.65122 -17.08748 -16.81092 -16.61686 -16.53902 -16.39010
-15.63041 -15.49009 -15.36560 -14.76047 -14.60522 -14.57900 -14.27869 -13.96742
-13.15685 -12.75497 -12.57745 -12.12422 -12.09914 -11.96283 -11.71163 -11.21835
-11.14230 -10.82419 -10.47224 -10.45511 -10.28551 -9.77308 -8.64183 -6.17340
-0.84359 -0.35754 0.32665 0.50323 1.24082 1.25677 1.38024 1.78208
2.08336 2.33067 2.45228 2.57437 2.92769 2.97629 3.12949 3.65884
3.72585 3.81317 3.96852 4.04442 4.14469 4.22718 4.26827 4.60542
4.67897 4.86918 5.12144 5.19063 5.25751 5.31594 5.68600 5.73742
5.80475 6.32976 6.59770 6.78084 7.04860 7.14706 7.64964 8.50640
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.016516 B = 0.006582 C = 0.004714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1694.925965 B = 4252.838711 C = 5937.912028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.010 3.990
3 Si 0.946 3.054
4 H -0.254 1.254
5 H -0.254 1.254
6 H -0.250 1.250
7 C -0.333 4.333
8 H 0.076 0.924
9 N -0.544 5.544
10 C 0.472 3.528
11 O -0.609 6.609
12 C 0.131 3.869
13 C -0.176 4.176
14 C 0.171 3.829
15 N -0.500 5.500
16 C 0.341 3.659
17 C 0.136 3.864
18 C -0.120 4.120
19 C -0.077 4.077
20 C -0.141 4.141
21 C 0.078 3.922
22 N -0.493 5.493
23 N -0.502 5.502
24 H 0.289 0.711
25 H 0.394 0.606
26 H 0.170 0.830
27 H 0.236 0.764
28 H 0.161 0.839
29 H 0.182 0.818
30 H 0.179 0.821
31 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.834 5.236 -0.035 26.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.194 4.194
3 Si 0.766 3.234
4 H -0.179 1.179
5 H -0.178 1.178
6 H -0.174 1.174
7 C -0.462 4.462
8 H 0.094 0.906
9 N -0.180 5.180
10 C 0.259 3.741
11 O -0.496 6.496
12 C -0.015 4.015
13 C -0.199 4.199
14 C 0.004 3.996
15 N -0.215 5.215
16 C 0.075 3.925
17 C -0.001 4.001
18 C -0.141 4.141
19 C -0.102 4.102
20 C -0.161 4.161
21 C -0.081 4.081
22 N -0.203 5.203
23 N -0.220 5.220
24 H 0.099 0.901
25 H 0.231 0.769
26 H 0.188 0.812
27 H 0.252 0.748
28 H 0.179 0.821
29 H 0.199 0.801
30 H 0.197 0.803
31 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges 24.675 5.484 -0.041 25.277
hybrid contribution -0.271 0.010 0.005 0.271
sum 24.404 5.494 -0.035 25.015
Atomic orbital electron populations
1.69669 1.07588 1.30138 1.45992 1.25983 0.96401 1.02060 0.94997
0.85611 0.79339 0.77932 0.80535 1.17863 1.17802 1.17435 1.19239
0.80564 0.95995 1.50438 0.90561 1.42022 1.06572 1.07915 1.61503
1.17756 0.85849 0.84170 0.86302 1.90607 1.68940 1.31753 1.58271
1.21725 0.94165 0.90653 0.94977 1.23230 0.97153 0.99852 0.99688
1.24074 0.90711 0.96843 0.87965 1.68215 1.40811 0.98474 1.14005
1.21246 0.85396 0.92587 0.93280 1.18869 0.90812 0.88347 1.02074
1.22326 0.92557 1.01645 0.97606 1.22085 1.02737 0.90615 0.94770
1.22769 0.94272 1.01668 0.97390 1.23309 0.94290 0.94655 0.95827
1.67455 1.42862 0.99085 1.10870 1.68379 1.10409 1.30099 1.13063
0.90060 0.76936 0.81246 0.74811 0.82149 0.80079 0.80344 0.80677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -53.21 13.95 21.70 0.30 -52.91 16
2 C 0.01 0.55 5.50 85.00 0.47 1.02 16
3 Si 0.95 42.37 27.74 68.60 1.90 44.27 16
4 H -0.25 -10.91 7.11 99.48 0.71 -10.21 16
5 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16
6 H -0.25 -10.98 6.52 99.48 0.65 -10.34 16
7 C -0.33 -20.39 10.16 84.16 0.86 -19.54 16
8 H 0.08 5.31 7.38 -2.91 -0.02 5.29 16
9 N -0.54 -29.82 5.07 -309.31 -1.57 -31.39 16
10 C 0.47 24.82 7.77 86.91 0.68 25.50 16
11 O -0.61 -35.44 15.99 -3.85 -0.06 -35.50 16
12 C 0.13 5.55 6.79 41.99 0.29 5.83 16
13 C -0.18 -5.58 9.72 22.77 0.22 -5.36 16
14 C 0.17 3.99 11.30 84.78 0.96 4.95 16
15 N -0.50 -13.82 9.40 -189.19 -1.78 -15.59 16
16 C 0.34 11.76 7.57 137.63 1.04 12.80 16
17 C 0.14 4.10 6.75 41.99 0.28 4.38 16
18 C -0.12 -2.46 9.60 22.57 0.22 -2.24 16
19 C -0.08 -1.02 10.17 22.44 0.23 -0.79 16
20 C -0.14 -1.92 10.11 22.41 0.23 -1.69 16
21 C 0.08 1.70 11.18 84.74 0.95 2.65 16
22 N -0.49 -15.76 10.02 -184.82 -1.85 -17.61 16
23 N -0.50 -20.79 9.35 -178.35 -1.67 -22.46 16
24 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16
25 H 0.39 20.21 5.14 -92.71 -0.48 19.74 16
26 H 0.17 4.98 7.73 -2.91 -0.02 4.96 16
27 H 0.24 2.59 8.06 -2.91 -0.02 2.57 16
28 H 0.16 2.77 7.50 -2.91 -0.02 2.75 16
29 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16
30 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16
31 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16
Total: -1.00 -81.74 287.17 2.34 -79.40
By element:
Atomic # 1 Polarization: 23.63 SS G_CDS: 0.66 Total: 24.28 kcal
Atomic # 6 Polarization: 21.11 SS G_CDS: 6.41 Total: 27.51 kcal
Atomic # 7 Polarization: -133.40 SS G_CDS: -6.57 Total: -139.96 kcal
Atomic # 8 Polarization: -35.44 SS G_CDS: -0.06 Total: -35.50 kcal
Atomic # 14 Polarization: 42.37 SS G_CDS: 1.90 Total: 44.27 kcal
Total: -81.74 2.34 -79.40 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001542735351.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.005 kcal
(2) G-P(sol) polarization free energy of solvation -81.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.605 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds