Wall clock time and date at job start Mon Mar 30 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31278 * 1 3 3 Si 1.86797 * 120.00214 * 2 1 4 4 H 1.48507 * 109.46754 * 269.99396 * 3 2 1 5 5 H 1.48497 * 109.47484 * 29.99581 * 3 2 1 6 6 H 1.48499 * 109.47151 * 149.99932 * 3 2 1 7 7 C 1.39183 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00370 * 0.02562 * 7 2 1 9 9 N 1.36685 * 119.99919 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00343 * 180.02562 * 9 7 2 11 11 O 1.21542 * 119.99656 * 359.97438 * 10 9 7 12 12 C 1.48250 * 120.00488 * 179.97438 * 10 9 7 13 13 C 1.39755 * 120.52027 * 179.97438 * 12 10 9 14 14 C 1.38776 * 118.41298 * 179.72429 * 13 12 10 15 15 N 1.32105 * 119.24905 * 359.97438 * 14 13 12 16 16 C 1.32644 * 120.98687 * 0.02562 * 15 14 13 17 17 C 1.48426 * 119.13126 * 180.02562 * 16 15 14 18 18 C 1.39260 * 119.71850 * 359.97438 * 17 16 15 19 19 C 1.38485 * 119.06819 * 180.02562 * 18 17 16 20 20 C 1.38709 * 118.49759 * 0.02562 * 19 18 17 21 21 C 1.38353 * 119.35293 * 0.02562 * 20 19 18 22 22 N 1.31680 * 120.88902 * 359.71378 * 21 20 19 23 23 N 1.32346 * 121.73790 * 359.97438 * 16 15 14 24 24 H 0.97002 * 119.99570 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99537 * 0.02562 * 9 7 2 26 26 H 1.08000 * 120.79341 * 359.74539 * 13 12 10 27 27 H 1.07995 * 120.37252 * 179.97438 * 14 13 12 28 28 H 1.08006 * 120.46874 * 0.02562 * 18 17 16 29 29 H 1.07996 * 120.75049 * 180.02562 * 19 18 17 30 30 H 1.08004 * 120.32444 * 180.02562 * 20 19 18 31 31 H 1.07997 * 119.55960 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6177 0.0000 4 1 2.4944 2.0462 -1.4002 5 1 1.4443 2.6527 0.6999 6 1 3.5444 1.4401 0.7000 7 6 2.0086 -1.2054 0.0005 8 1 1.4686 -2.1407 0.0005 9 7 3.3754 -1.2055 0.0011 10 6 4.0493 -2.3727 0.0011 11 8 3.4415 -3.4252 0.0011 12 6 5.5318 -2.3728 0.0011 13 6 6.2414 -3.5768 0.0016 14 6 7.6282 -3.5259 -0.0043 15 7 8.2310 -2.3504 -0.0107 16 6 7.5307 -1.2239 -0.0111 17 6 8.2503 0.0742 -0.0190 18 6 9.6428 0.0916 -0.0253 19 6 10.3005 1.3103 -0.0321 20 6 9.5420 2.4716 -0.0318 21 6 8.1615 2.3800 -0.0242 22 7 7.5618 1.2077 -0.0229 23 7 6.2073 -1.2269 -0.0056 24 1 -0.4849 0.8401 -0.0004 25 1 3.8604 -0.3655 0.0014 26 1 5.7229 -4.5242 0.0062 27 1 8.2081 -4.4370 -0.0036 28 1 10.2021 -0.8324 -0.0249 29 1 11.3795 1.3555 -0.0376 30 1 10.0243 3.4380 -0.0374 31 1 7.5677 3.2821 -0.0243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542735351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:08 Heat of formation + Delta-G solvation = 35.605261 kcal Electronic energy + Delta-G solvation = -19133.385976 eV Core-core repulsion = 15993.424349 eV Total energy + Delta-G solvation = -3139.961627 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.30885 -40.88270 -40.00542 -36.31623 -35.04453 -34.20221 -33.88465 -33.33019 -31.32742 -28.06843 -26.20972 -25.81528 -24.20326 -23.34369 -21.73670 -20.86587 -19.07704 -18.73530 -17.65122 -17.08748 -16.81092 -16.61686 -16.53902 -16.39010 -15.63041 -15.49009 -15.36560 -14.76047 -14.60522 -14.57900 -14.27869 -13.96742 -13.15685 -12.75497 -12.57745 -12.12422 -12.09914 -11.96283 -11.71163 -11.21835 -11.14230 -10.82419 -10.47224 -10.45511 -10.28551 -9.77308 -8.64183 -6.17340 -0.84359 -0.35754 0.32665 0.50323 1.24082 1.25677 1.38024 1.78208 2.08336 2.33067 2.45228 2.57437 2.92769 2.97629 3.12949 3.65884 3.72585 3.81317 3.96852 4.04442 4.14469 4.22718 4.26827 4.60542 4.67897 4.86918 5.12144 5.19063 5.25751 5.31594 5.68600 5.73742 5.80475 6.32976 6.59770 6.78084 7.04860 7.14706 7.64964 8.50640 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.006582 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.925965 B = 4252.838711 C = 5937.912028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.254 1.254 5 H -0.254 1.254 6 H -0.250 1.250 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.544 5.544 10 C 0.472 3.528 11 O -0.609 6.609 12 C 0.131 3.869 13 C -0.176 4.176 14 C 0.171 3.829 15 N -0.500 5.500 16 C 0.341 3.659 17 C 0.136 3.864 18 C -0.120 4.120 19 C -0.077 4.077 20 C -0.141 4.141 21 C 0.078 3.922 22 N -0.493 5.493 23 N -0.502 5.502 24 H 0.289 0.711 25 H 0.394 0.606 26 H 0.170 0.830 27 H 0.236 0.764 28 H 0.161 0.839 29 H 0.182 0.818 30 H 0.179 0.821 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.834 5.236 -0.035 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.194 4.194 3 Si 0.766 3.234 4 H -0.179 1.179 5 H -0.178 1.178 6 H -0.174 1.174 7 C -0.462 4.462 8 H 0.094 0.906 9 N -0.180 5.180 10 C 0.259 3.741 11 O -0.496 6.496 12 C -0.015 4.015 13 C -0.199 4.199 14 C 0.004 3.996 15 N -0.215 5.215 16 C 0.075 3.925 17 C -0.001 4.001 18 C -0.141 4.141 19 C -0.102 4.102 20 C -0.161 4.161 21 C -0.081 4.081 22 N -0.203 5.203 23 N -0.220 5.220 24 H 0.099 0.901 25 H 0.231 0.769 26 H 0.188 0.812 27 H 0.252 0.748 28 H 0.179 0.821 29 H 0.199 0.801 30 H 0.197 0.803 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 24.675 5.484 -0.041 25.277 hybrid contribution -0.271 0.010 0.005 0.271 sum 24.404 5.494 -0.035 25.015 Atomic orbital electron populations 1.69669 1.07588 1.30138 1.45992 1.25983 0.96401 1.02060 0.94997 0.85611 0.79339 0.77932 0.80535 1.17863 1.17802 1.17435 1.19239 0.80564 0.95995 1.50438 0.90561 1.42022 1.06572 1.07915 1.61503 1.17756 0.85849 0.84170 0.86302 1.90607 1.68940 1.31753 1.58271 1.21725 0.94165 0.90653 0.94977 1.23230 0.97153 0.99852 0.99688 1.24074 0.90711 0.96843 0.87965 1.68215 1.40811 0.98474 1.14005 1.21246 0.85396 0.92587 0.93280 1.18869 0.90812 0.88347 1.02074 1.22326 0.92557 1.01645 0.97606 1.22085 1.02737 0.90615 0.94770 1.22769 0.94272 1.01668 0.97390 1.23309 0.94290 0.94655 0.95827 1.67455 1.42862 0.99085 1.10870 1.68379 1.10409 1.30099 1.13063 0.90060 0.76936 0.81246 0.74811 0.82149 0.80079 0.80344 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.21 13.95 21.70 0.30 -52.91 16 2 C 0.01 0.55 5.50 85.00 0.47 1.02 16 3 Si 0.95 42.37 27.74 68.60 1.90 44.27 16 4 H -0.25 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.34 16 7 C -0.33 -20.39 10.16 84.16 0.86 -19.54 16 8 H 0.08 5.31 7.38 -2.91 -0.02 5.29 16 9 N -0.54 -29.82 5.07 -309.31 -1.57 -31.39 16 10 C 0.47 24.82 7.77 86.91 0.68 25.50 16 11 O -0.61 -35.44 15.99 -3.85 -0.06 -35.50 16 12 C 0.13 5.55 6.79 41.99 0.29 5.83 16 13 C -0.18 -5.58 9.72 22.77 0.22 -5.36 16 14 C 0.17 3.99 11.30 84.78 0.96 4.95 16 15 N -0.50 -13.82 9.40 -189.19 -1.78 -15.59 16 16 C 0.34 11.76 7.57 137.63 1.04 12.80 16 17 C 0.14 4.10 6.75 41.99 0.28 4.38 16 18 C -0.12 -2.46 9.60 22.57 0.22 -2.24 16 19 C -0.08 -1.02 10.17 22.44 0.23 -0.79 16 20 C -0.14 -1.92 10.11 22.41 0.23 -1.69 16 21 C 0.08 1.70 11.18 84.74 0.95 2.65 16 22 N -0.49 -15.76 10.02 -184.82 -1.85 -17.61 16 23 N -0.50 -20.79 9.35 -178.35 -1.67 -22.46 16 24 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16 25 H 0.39 20.21 5.14 -92.71 -0.48 19.74 16 26 H 0.17 4.98 7.73 -2.91 -0.02 4.96 16 27 H 0.24 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.16 2.77 7.50 -2.91 -0.02 2.75 16 29 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 30 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -81.74 287.17 2.34 -79.40 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.66 Total: 24.28 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 6.41 Total: 27.51 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -6.57 Total: -139.96 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.06 Total: -35.50 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.90 Total: 44.27 kcal Total: -81.74 2.34 -79.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.005 kcal (2) G-P(sol) polarization free energy of solvation -81.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds