Wall clock time and date at job start Mon Mar 30 2020 01:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47229 * 196.25860 * 3 2 1 5 5 C 1.36867 * 120.00144 * 69.06349 * 4 3 2 6 6 H 1.08001 * 119.99849 * 190.63039 * 5 4 3 7 7 C 1.39041 * 119.99643 * 10.34416 * 5 4 3 8 8 N 1.31363 * 120.00513 * 229.06179 * 7 5 4 9 9 Si 1.86801 * 119.99805 * 49.06809 * 7 5 4 10 10 H 1.48502 * 109.47131 * 95.24925 * 9 7 5 11 11 H 1.48500 * 109.47149 * 215.24553 * 9 7 5 12 12 H 1.48500 * 109.47452 * 335.24937 * 9 7 5 13 13 C 1.34781 * 120.00421 * 249.06456 * 4 3 2 14 14 O 1.21626 * 120.00287 * 194.73444 * 13 4 3 15 15 C 1.47510 * 119.99544 * 14.73324 * 13 4 3 16 16 C 1.40943 * 119.82792 * 21.02248 * 15 13 4 17 17 N 1.30560 * 122.24620 * 179.97438 * 16 15 13 18 18 C 1.33963 * 121.39858 * 0.02562 * 17 16 15 19 19 C 1.38165 * 135.89091 * 179.97438 * 18 17 16 20 20 N 1.34298 * 107.00515 * 180.02562 * 19 18 17 21 21 H 0.97000 * 123.97263 * 180.02562 * 20 19 18 22 22 N 1.28501 * 112.05277 * 0.02562 * 20 19 18 23 23 C 1.31956 * 110.68777 * 359.97438 * 22 20 19 24 24 C 1.38803 * 119.82611 * 200.74737 * 15 13 4 25 25 H 4.40636 * 5.51433 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46787 * 76.25771 * 3 2 1 27 27 H 1.09003 * 109.47297 * 316.26188 * 3 2 1 28 28 H 0.97000 * 120.00450 * 180.02562 * 8 7 5 29 29 H 1.07997 * 118.88067 * 359.97438 * 16 15 13 30 30 H 1.08000 * 126.49726 * 0.04072 * 19 18 17 31 31 H 1.07999 * 121.05485 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3268 0.3867 5 6 2.9624 1.7717 1.6696 6 1 3.1627 2.8044 1.9143 7 6 2.5247 0.8956 2.6566 8 7 1.5306 1.2372 3.4444 9 14 3.3505 -0.7673 2.8624 10 1 4.3956 -0.6742 3.9134 11 1 2.3372 -1.7773 3.2601 12 1 3.9754 -1.1722 1.5776 13 6 3.7513 2.1088 -0.5209 14 8 4.3880 3.0784 -0.1553 15 6 3.6549 1.7886 -1.9576 16 6 2.6020 0.9771 -2.4258 17 7 2.4711 0.6646 -3.6867 18 6 3.3390 1.1030 -4.6082 19 6 3.4888 0.9656 -5.9748 20 7 4.5836 1.6616 -6.3219 21 1 4.9159 1.7317 -7.2305 22 7 5.1392 2.2239 -5.3088 23 6 4.4708 1.9568 -4.2028 24 6 4.5983 2.2928 -2.8421 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0094 -0.2433 -0.9983 27 1 3.0097 -0.7417 0.7105 28 1 1.2255 0.6261 4.1331 29 1 1.8787 0.6008 -1.7175 30 1 2.8469 0.4049 -6.6382 31 1 5.4070 2.9197 -2.4965 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567960623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:21 Heat of formation + Delta-G solvation = 186.979681 kcal Electronic energy + Delta-G solvation = -19794.015346 eV Core-core repulsion = 16660.617806 eV Total energy + Delta-G solvation = -3133.397540 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.52834 -39.58538 -37.43210 -35.56497 -32.85552 -32.63308 -31.78117 -30.94956 -29.78146 -27.04886 -26.11706 -24.32293 -23.06422 -20.60703 -19.78836 -18.55734 -18.47496 -17.74598 -16.87129 -16.30756 -16.03146 -15.73929 -15.07515 -14.60421 -14.23136 -13.68147 -13.64222 -12.90372 -12.77887 -12.67751 -12.55232 -12.32052 -11.68254 -11.36759 -10.98596 -10.76154 -10.54950 -10.22983 -9.91300 -9.38260 -9.18913 -8.92730 -8.66587 -8.40444 -8.21225 -7.94635 -6.82174 -3.77321 0.56720 1.47007 2.56143 2.71554 2.91569 3.09467 3.16314 3.27706 3.37569 3.61153 3.97640 4.02430 4.19760 4.53108 4.58739 4.79043 4.91418 5.06254 5.22878 5.32161 5.40609 5.59287 5.78954 5.94809 6.09288 6.27191 6.47414 6.47826 6.79187 6.89143 7.24181 7.83582 8.03580 8.15607 8.22267 8.27792 8.84799 9.18300 9.70244 10.25848 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.005791 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.274074 B = 4833.537253 C = 5248.147884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.186 4.186 3 C 0.157 3.843 4 N -0.421 5.421 5 C -0.336 4.336 6 H 0.120 0.880 7 C 0.088 3.912 8 N -0.785 5.785 9 Si 0.827 3.173 10 H -0.272 1.272 11 H -0.276 1.276 12 H -0.242 1.242 13 C 0.472 3.528 14 O -0.572 6.572 15 C -0.137 4.137 16 C 0.128 3.872 17 N -0.448 5.448 18 C 0.002 3.998 19 C 0.005 3.995 20 N -0.337 5.337 21 H 0.449 0.551 22 N -0.294 5.294 23 C 0.015 3.985 24 C 0.000 4.000 25 H 0.214 0.786 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.279 0.721 29 H 0.183 0.817 30 H 0.195 0.805 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -5.648 -15.049 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.035 3.965 4 N -0.138 5.138 5 C -0.461 4.461 6 H 0.138 0.862 7 C -0.126 4.126 8 N -0.414 5.414 9 Si 0.653 3.347 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.169 1.169 13 C 0.263 3.737 14 O -0.458 6.458 15 C -0.147 4.147 16 C -0.053 4.053 17 N -0.156 5.156 18 C -0.122 4.122 19 C -0.151 4.151 20 N -0.044 5.044 21 H 0.294 0.706 22 N -0.131 5.131 23 C -0.133 4.133 24 C -0.031 4.031 25 H 0.231 0.769 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.200 0.800 30 H 0.212 0.788 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.995 -5.086 -15.512 16.354 hybrid contribution 0.254 -0.844 0.388 0.963 sum 1.248 -5.930 -15.124 16.293 Atomic orbital electron populations 1.24713 0.95622 0.99659 1.00552 1.23126 0.94509 1.00786 1.00279 1.19944 0.84702 0.88995 1.02898 1.43625 1.47127 1.13035 1.10000 1.19032 1.45395 0.98130 0.83520 0.86239 1.25024 0.93684 0.97787 0.96138 1.70206 1.15554 1.38195 1.17495 0.88107 0.82131 0.85109 0.79391 1.19817 1.20133 1.16913 1.17290 0.85217 0.87308 0.83845 1.90645 1.44044 1.31049 1.80031 1.20981 0.97100 1.00407 0.96211 1.24136 0.96410 0.92962 0.91750 1.67237 1.25391 1.22027 1.00975 1.20135 0.95975 1.02511 0.93552 1.22335 0.94217 1.03421 0.95095 1.43253 1.18169 1.32727 1.10253 0.70629 1.73560 1.23536 1.21783 0.94182 1.21267 0.96465 1.01629 0.93918 1.20530 0.98384 0.96989 0.87152 0.76884 0.87852 0.87639 0.91054 0.80036 0.78823 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 19.25 29.55 0.57 -2.77 16 2 C -0.19 -3.72 10.38 -37.12 -0.39 -4.11 16 3 C 0.16 3.25 4.58 -6.83 -0.03 3.22 16 4 N -0.42 -10.27 2.61 -119.13 -0.31 -10.58 16 5 C -0.34 -9.12 9.25 -15.01 -0.14 -9.26 16 6 H 0.12 3.62 7.58 -52.49 -0.40 3.22 16 7 C 0.09 2.25 4.45 -17.45 -0.08 2.17 16 8 N -0.78 -20.58 13.95 55.50 0.77 -19.81 16 9 Si 0.83 18.22 26.64 -169.99 -4.53 13.69 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 12 H -0.24 -4.97 5.36 56.52 0.30 -4.67 16 13 C 0.47 11.50 7.36 -12.48 -0.09 11.41 16 14 O -0.57 -15.78 16.26 5.25 0.09 -15.70 16 15 C -0.14 -2.82 5.50 -104.89 -0.58 -3.40 16 16 C 0.13 2.44 8.61 -17.07 -0.15 2.29 16 17 N -0.45 -8.00 10.42 -9.62 -0.10 -8.10 16 18 C 0.00 0.03 7.55 -83.21 -0.63 -0.60 16 19 C 0.00 0.05 12.13 -16.50 -0.20 -0.15 16 20 N -0.34 -3.39 6.68 30.88 0.21 -3.18 16 21 H 0.45 2.22 8.96 -190.42 -1.71 0.51 16 22 N -0.29 -4.33 12.21 33.23 0.41 -3.92 16 23 C 0.02 0.26 7.54 -83.12 -0.63 -0.36 16 24 C 0.00 0.00 9.75 -38.43 -0.37 -0.38 16 25 H 0.21 2.91 7.80 -54.08 -0.42 2.48 16 26 H 0.10 1.91 4.61 -51.93 -0.24 1.67 16 27 H 0.11 2.19 2.46 -51.93 -0.13 2.06 16 28 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.18 3.44 3.13 -52.49 -0.16 3.28 16 30 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.15 2.77 7.80 -52.49 -0.41 2.36 16 LS Contribution 273.40 15.07 4.12 4.12 Total: -1.00 -33.29 273.40 -5.18 -38.47 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.12 Total: 6.95 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.71 Total: -1.93 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.98 Total: -45.60 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.53 Total: 13.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.29 -5.18 -38.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567960623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.449 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds