Wall clock time and date at job start Mon Mar 30 2020 01:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47229 * 196.25860 * 3 2 1 5 5 C 1.36867 * 120.00144 * 69.06349 * 4 3 2 6 6 H 1.08001 * 119.99849 * 190.63039 * 5 4 3 7 7 C 1.39041 * 119.99643 * 10.34416 * 5 4 3 8 8 N 1.31363 * 120.00513 * 229.06179 * 7 5 4 9 9 Si 1.86801 * 119.99805 * 49.06809 * 7 5 4 10 10 H 1.48502 * 109.47131 * 95.24925 * 9 7 5 11 11 H 1.48500 * 109.47149 * 215.24553 * 9 7 5 12 12 H 1.48500 * 109.47452 * 335.24937 * 9 7 5 13 13 C 1.34781 * 120.00421 * 249.06456 * 4 3 2 14 14 O 1.21626 * 120.00287 * 194.73444 * 13 4 3 15 15 C 1.47510 * 119.99544 * 14.73324 * 13 4 3 16 16 C 1.40943 * 119.82792 * 21.02248 * 15 13 4 17 17 N 1.30560 * 122.24620 * 179.97438 * 16 15 13 18 18 C 1.33963 * 121.39858 * 0.02562 * 17 16 15 19 19 C 1.38165 * 135.89091 * 179.97438 * 18 17 16 20 20 N 1.34298 * 107.00515 * 180.02562 * 19 18 17 21 21 H 0.97000 * 123.97263 * 180.02562 * 20 19 18 22 22 N 1.28501 * 112.05277 * 0.02562 * 20 19 18 23 23 C 1.31956 * 110.68777 * 359.97438 * 22 20 19 24 24 C 1.38803 * 119.82611 * 200.74737 * 15 13 4 25 25 H 4.40636 * 5.51433 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46787 * 76.25771 * 3 2 1 27 27 H 1.09003 * 109.47297 * 316.26188 * 3 2 1 28 28 H 0.97000 * 120.00450 * 180.02562 * 8 7 5 29 29 H 1.07997 * 118.88067 * 359.97438 * 16 15 13 30 30 H 1.08000 * 126.49726 * 0.04072 * 19 18 17 31 31 H 1.07999 * 121.05485 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3268 0.3867 5 6 2.9624 1.7717 1.6696 6 1 3.1627 2.8044 1.9143 7 6 2.5247 0.8956 2.6566 8 7 1.5306 1.2372 3.4444 9 14 3.3505 -0.7673 2.8624 10 1 4.3956 -0.6742 3.9134 11 1 2.3372 -1.7773 3.2601 12 1 3.9754 -1.1722 1.5776 13 6 3.7513 2.1088 -0.5209 14 8 4.3880 3.0784 -0.1553 15 6 3.6549 1.7886 -1.9576 16 6 2.6020 0.9771 -2.4258 17 7 2.4711 0.6646 -3.6867 18 6 3.3390 1.1030 -4.6082 19 6 3.4888 0.9656 -5.9748 20 7 4.5836 1.6616 -6.3219 21 1 4.9159 1.7317 -7.2305 22 7 5.1392 2.2239 -5.3088 23 6 4.4708 1.9568 -4.2028 24 6 4.5983 2.2928 -2.8421 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0094 -0.2433 -0.9983 27 1 3.0097 -0.7417 0.7105 28 1 1.2255 0.6261 4.1331 29 1 1.8787 0.6008 -1.7175 30 1 2.8469 0.4049 -6.6382 31 1 5.4070 2.9197 -2.4965 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567960623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:21 Heat of formation + Delta-G solvation = 161.282672 kcal Electronic energy + Delta-G solvation = -19795.129652 eV Core-core repulsion = 16660.617806 eV Total energy + Delta-G solvation = -3134.511846 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.67701 -41.24234 -38.92667 -37.40470 -34.67421 -33.99700 -33.43456 -32.29747 -30.98136 -28.66763 -27.77774 -25.86637 -24.49434 -21.86463 -21.37135 -20.20008 -19.60023 -19.21280 -18.57661 -17.91596 -17.55091 -16.87744 -16.60701 -16.18181 -15.73378 -15.46852 -15.26234 -14.56940 -14.38938 -14.22997 -14.02142 -13.92964 -13.25212 -12.74048 -12.70289 -12.49879 -11.87458 -11.78826 -11.49765 -11.08481 -10.88461 -10.52426 -10.23342 -10.12923 -9.92957 -9.16193 -8.77018 -5.82459 -0.72211 0.10003 1.15195 1.31257 1.37507 1.38794 1.70945 1.87314 1.89278 1.96952 2.14238 2.53418 2.70238 2.91120 3.10875 3.42227 3.60052 3.66552 3.83341 3.85787 4.15156 4.28727 4.37384 4.46800 4.71157 4.85609 5.01210 5.12049 5.36400 5.45762 5.98993 6.02557 6.34185 6.71246 6.78059 6.79907 6.89561 7.24233 7.80359 8.36566 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030124 B = 0.005791 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.274074 B = 4833.537253 C = 5248.147884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.233 4.233 3 C 0.159 3.841 4 N -0.427 5.427 5 C -0.379 4.379 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.822 5.822 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.257 1.257 12 H -0.220 1.220 13 C 0.467 3.533 14 O -0.621 6.621 15 C -0.151 4.151 16 C 0.110 3.890 17 N -0.434 5.434 18 C -0.034 4.034 19 C 0.058 3.942 20 N -0.302 5.302 21 H 0.475 0.525 22 N -0.307 5.307 23 C -0.008 4.008 24 C 0.003 3.997 25 H 0.253 0.747 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.288 0.712 29 H 0.182 0.818 30 H 0.252 0.748 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -8.372 -19.023 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.234 4.234 3 C 0.037 3.963 4 N -0.143 5.143 5 C -0.504 4.504 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.452 5.452 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.181 1.181 12 H -0.146 1.146 13 C 0.260 3.740 14 O -0.510 6.510 15 C -0.161 4.161 16 C -0.070 4.070 17 N -0.142 5.142 18 C -0.159 4.159 19 C -0.100 4.100 20 N -0.013 5.013 21 H 0.326 0.674 22 N -0.145 5.145 23 C -0.154 4.154 24 C -0.028 4.028 25 H 0.269 0.731 26 H 0.142 0.858 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.199 0.801 30 H 0.268 0.732 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.333 -7.832 -19.507 21.023 hybrid contribution 0.461 0.110 1.224 1.312 sum 0.794 -7.722 -18.283 19.863 Atomic orbital electron populations 1.25660 0.96519 0.97205 0.98376 1.23210 0.94918 1.02974 1.02338 1.20006 0.85689 0.86694 1.03864 1.43570 1.47358 1.14418 1.08930 1.18522 1.49273 0.96586 0.85991 0.91896 1.25576 0.92894 1.01377 0.95049 1.70201 1.16387 1.40263 1.18376 0.87111 0.81139 0.80529 0.80091 1.20226 1.18122 1.14600 1.17975 0.84090 0.86377 0.85572 1.90584 1.46005 1.33040 1.81389 1.20611 0.99043 1.02677 0.93803 1.23873 0.96393 0.94263 0.92469 1.67201 1.25303 1.21142 1.00536 1.20780 0.95949 1.03594 0.95545 1.23205 0.93049 1.00353 0.93355 1.43472 1.17028 1.30073 1.10711 0.67368 1.73545 1.23933 1.22652 0.94340 1.21171 0.97815 1.02781 0.93655 1.20529 0.97605 0.96060 0.88587 0.73087 0.85820 0.87761 0.90104 0.80134 0.73159 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 19.25 74.32 1.43 -4.03 16 2 C -0.23 -9.29 10.38 31.13 0.32 -8.96 16 3 C 0.16 6.66 4.58 84.58 0.39 7.04 16 4 N -0.43 -21.99 2.61 -649.07 -1.69 -23.68 16 5 C -0.38 -22.09 9.25 84.10 0.78 -21.31 16 6 H 0.06 4.25 7.58 -2.91 -0.02 4.23 16 7 C 0.06 3.41 4.45 84.96 0.38 3.79 16 8 N -0.82 -44.65 13.95 21.68 0.30 -44.35 16 9 Si 0.89 38.04 26.64 68.60 1.83 39.86 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 12 H -0.22 -8.61 5.36 99.48 0.53 -8.08 16 13 C 0.47 24.40 7.36 86.69 0.64 25.04 16 14 O -0.62 -37.31 16.26 -4.11 -0.07 -37.37 16 15 C -0.15 -6.49 5.50 -20.04 -0.11 -6.60 16 16 C 0.11 4.19 8.61 85.54 0.74 4.92 16 17 N -0.43 -14.54 10.42 -184.35 -1.92 -16.46 16 18 C -0.03 -0.99 7.55 41.23 0.31 -0.68 16 19 C 0.06 0.92 12.13 84.30 1.02 1.94 16 20 N -0.30 -4.41 6.68 -56.22 -0.38 -4.79 16 21 H 0.48 1.70 8.96 -219.98 -1.97 -0.27 16 22 N -0.31 -8.07 12.21 -48.78 -0.60 -8.66 16 23 C -0.01 -0.26 7.54 42.17 0.32 0.06 16 24 C 0.00 0.10 9.75 23.02 0.22 0.32 16 25 H 0.25 6.07 7.80 -4.41 -0.03 6.04 16 26 H 0.12 4.60 4.61 -2.38 -0.01 4.58 16 27 H 0.11 4.28 2.46 -2.39 -0.01 4.27 16 28 H 0.29 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.18 6.87 3.13 -2.91 -0.01 6.86 16 30 H 0.25 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.14 5.50 7.80 -2.91 -0.02 5.48 16 Total: -1.00 -80.10 273.40 2.99 -77.10 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.92 Total: 16.81 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 6.44 Total: 1.54 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -4.28 Total: -97.94 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.07 Total: -37.37 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.83 Total: 39.86 kcal Total: -80.10 2.99 -77.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567960623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.385 kcal (2) G-P(sol) polarization free energy of solvation -80.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds