Wall clock time and date at job start Mon Mar 30 2020 01:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47519 * 2 1 4 4 C 1.53009 * 109.46989 * 240.00401 * 2 1 3 5 5 N 1.46495 * 109.47011 * 185.00213 * 4 2 1 6 6 C 1.36934 * 120.00214 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99879 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00691 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00388 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99396 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46846 * 90.00418 * 10 8 6 12 12 H 1.48502 * 109.47258 * 210.00093 * 10 8 6 13 13 H 1.48493 * 109.47413 * 330.00265 * 10 8 6 14 14 N 1.46495 * 109.47317 * 120.00324 * 2 1 3 15 15 C 1.46499 * 120.00322 * 60.00184 * 14 2 1 16 16 C 1.34773 * 120.00124 * 239.99555 * 14 2 1 17 17 O 1.21622 * 120.00202 * 5.71880 * 16 14 2 18 18 C 1.47172 * 120.00163 * 185.71227 * 16 14 2 19 19 C 1.38250 * 128.47425 * 186.61461 * 18 16 14 20 20 N 1.31244 * 111.88626 * 179.85009 * 19 18 16 21 21 N 1.27334 * 120.03875 * 0.49484 * 20 19 18 22 22 S 1.56640 * 109.73863 * 359.71710 * 21 20 19 23 23 H 1.08996 * 109.47301 * 59.99673 * 1 2 3 24 24 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47145 * 299.99449 * 1 2 3 26 26 H 1.08999 * 109.46776 * 304.99866 * 4 2 1 27 27 H 1.08995 * 109.47003 * 64.99408 * 4 2 1 28 28 H 0.97004 * 120.00188 * 359.97438 * 5 4 2 29 29 H 0.96995 * 119.99969 * 179.97438 * 9 8 6 30 30 H 1.08997 * 109.47683 * 95.48034 * 15 14 2 31 31 H 1.09002 * 109.47561 * 215.48837 * 15 14 2 32 32 H 1.09009 * 109.46733 * 335.47812 * 15 14 2 33 33 H 1.08005 * 124.05601 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.4999 -0.8264 -1.1907 6 6 4.1838 -1.4378 -2.2073 7 1 3.6467 -1.8430 -3.0523 8 6 5.5673 -1.5371 -2.1521 9 7 6.2245 -2.1253 -3.1290 10 14 6.4962 -0.8358 -0.6910 11 1 6.6279 -1.8782 0.3584 12 1 7.8469 -0.3987 -1.1267 13 1 5.7524 0.3269 -0.1433 14 7 2.0183 -0.6906 1.1961 15 6 1.6645 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0832 17 8 3.0017 1.1546 1.9462 18 6 3.3871 -0.7610 3.2178 19 6 4.0969 -0.2501 4.2885 20 7 4.4762 -1.1932 5.1188 21 7 4.1866 -2.4094 4.8772 22 16 3.3740 -2.5044 3.5414 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.6053 -1.7197 -1.2953 27 1 1.7515 -0.1583 -2.1370 28 1 3.9824 -0.4622 -0.4320 29 1 7.1912 -2.1942 -3.0905 30 1 2.4634 -2.7356 1.0575 31 1 1.5284 -2.2619 2.4961 32 1 0.7381 -2.3258 0.9025 33 1 4.3110 0.7995 4.4268 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568259837.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:22 Heat of formation + Delta-G solvation = 40.256881 kcal Electronic energy + Delta-G solvation = -19030.988019 eV Core-core repulsion = 16026.672052 eV Total energy + Delta-G solvation = -3004.315967 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.95268 -41.10323 -38.05880 -36.06954 -34.11677 -33.09702 -32.04359 -28.79626 -28.02241 -27.57607 -24.81293 -23.93390 -22.09686 -20.78268 -20.29158 -19.57850 -18.27185 -17.74206 -17.22866 -16.72947 -16.30699 -16.17878 -15.75231 -15.19036 -14.86834 -14.42005 -14.23497 -13.89992 -13.81749 -13.80001 -13.49665 -13.16877 -12.95676 -12.94302 -12.46600 -12.29842 -11.89323 -11.78560 -11.38878 -11.22602 -11.12545 -11.04072 -10.84845 -9.83886 -9.32795 -8.08299 -5.38570 -1.40641 -0.31524 0.40384 0.82017 1.22083 1.29781 1.33347 1.66114 1.79409 2.37967 2.88255 3.24188 3.27616 3.57156 3.62851 3.95309 3.99615 4.23406 4.34357 4.48734 4.50812 4.70120 4.80723 4.90123 4.97046 5.11970 5.33593 5.43897 5.73927 6.07048 6.16877 6.52273 6.78276 7.03060 7.80815 7.96597 9.13315 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.008562 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.375534 B = 3269.396729 C = 4242.585016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.129 3.871 3 H 0.082 0.918 4 C 0.142 3.858 5 N -0.759 5.759 6 C -0.220 4.220 7 H 0.072 0.928 8 C -0.051 4.051 9 N -0.976 5.976 10 Si 0.925 3.075 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.271 1.271 14 N -0.588 5.588 15 C 0.050 3.950 16 C 0.592 3.408 17 O -0.557 6.557 18 C -0.313 4.313 19 C 0.071 3.929 20 N -0.275 5.275 21 N -0.308 5.308 22 S 0.518 5.482 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.358 0.642 29 H 0.257 0.743 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 -0.087 13.766 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.026 3.974 3 H 0.100 0.900 4 C 0.015 3.985 5 N -0.404 5.404 6 C -0.351 4.351 7 H 0.089 0.911 8 C -0.243 4.243 9 N -0.628 5.628 10 Si 0.755 3.245 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.197 1.197 14 N -0.320 5.320 15 C -0.094 4.094 16 C 0.378 3.622 17 O -0.437 6.437 18 C -0.454 4.454 19 C -0.096 4.096 20 N -0.138 5.138 21 N -0.288 5.288 22 S 0.654 5.346 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.190 0.810 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -14.290 -1.399 14.285 20.254 hybrid contribution 1.377 1.890 0.163 2.344 sum -12.913 0.491 14.448 19.384 Atomic orbital electron populations 1.22014 0.90412 1.04274 1.03666 1.21523 0.96876 0.96717 0.82259 0.90017 1.21307 0.82536 0.99080 0.95566 1.42755 1.03605 1.70635 1.23379 1.19078 0.89792 1.27109 0.99109 0.91051 1.25204 0.97293 1.02086 0.99745 1.69813 1.07402 1.50992 1.34559 0.85848 0.78716 0.78916 0.81038 1.20363 1.22058 1.19666 1.47747 1.48805 1.13676 1.21775 1.22379 1.04606 0.79952 1.02418 1.16776 0.78532 0.85835 0.81012 1.90810 1.62016 1.15419 1.75458 1.28042 1.12586 1.00765 1.04003 1.24740 0.93916 1.02856 0.88122 1.70849 1.20686 0.94000 1.28228 1.78432 1.16815 1.15741 1.17819 1.82690 1.35625 1.02405 1.13845 0.89636 0.89754 0.91504 0.92960 0.93833 0.80972 0.93375 0.91347 0.89901 0.85391 0.75486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.18 71.98 0.66 -1.74 16 2 C 0.13 3.40 2.79 44.99 0.13 3.53 16 3 H 0.08 2.59 6.91 -2.39 -0.02 2.57 16 4 C 0.14 4.64 5.56 86.38 0.48 5.12 16 5 N -0.76 -34.02 5.24 -343.45 -1.80 -35.82 16 6 C -0.22 -12.04 10.47 84.03 0.88 -11.16 16 7 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 8 C -0.05 -2.99 5.50 84.86 0.47 -2.53 16 9 N -0.98 -61.72 13.97 21.65 0.30 -61.42 16 10 Si 0.93 46.96 27.73 68.60 1.90 48.86 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 13 H -0.27 -13.47 6.52 99.48 0.65 -12.83 16 14 N -0.59 -15.21 2.24 -826.77 -1.86 -17.07 16 15 C 0.05 0.90 8.07 127.77 1.03 1.93 16 16 C 0.59 18.10 7.36 86.59 0.64 18.73 16 17 O -0.56 -20.73 16.33 -4.10 -0.07 -20.79 16 18 C -0.31 -8.34 6.45 24.62 0.16 -8.18 16 19 C 0.07 1.85 11.56 84.78 0.98 2.83 16 20 N -0.27 -7.71 11.54 -57.86 -0.67 -8.38 16 21 N -0.31 -8.26 12.51 37.02 0.46 -7.79 16 22 S 0.52 11.19 19.08 -56.49 -1.08 10.12 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 1.03 6.67 -2.39 -0.02 1.01 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.55 7.84 -2.39 -0.02 1.53 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.36 16.56 4.93 -92.71 -0.46 16.10 16 29 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.07 1.42 7.70 -2.39 -0.02 1.40 16 31 H 0.08 1.12 5.20 -15.24 -0.08 1.04 16 32 H 0.13 1.51 6.44 -2.38 -0.02 1.49 16 33 H 0.23 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -74.31 290.84 3.19 -71.13 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.57 Total: 12.64 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.42 Total: 8.52 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -3.56 Total: -130.48 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.07 Total: -20.79 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.86 kcal Atomic # 16 Polarization: 11.19 SS G_CDS: -1.08 Total: 10.12 kcal Total: -74.31 3.19 -71.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568259837.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.384 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds