Wall clock time and date at job start Mon Mar 30 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47130 * 2 1 4 4 C 1.53004 * 109.46982 * 120.00226 * 2 1 3 5 5 N 1.46503 * 109.46840 * 174.99941 * 4 2 1 6 6 C 1.36941 * 119.99551 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.38816 * 119.99861 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99627 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99906 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47263 * 59.99328 * 10 8 6 12 12 H 1.48507 * 109.46825 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46804 * 299.99379 * 10 8 6 14 14 N 1.46500 * 109.47452 * 240.00189 * 2 1 3 15 15 C 1.46503 * 119.99805 * 300.00556 * 14 2 1 16 16 C 1.34778 * 120.00063 * 119.99902 * 14 2 1 17 17 O 1.21614 * 120.00253 * 1.54581 * 16 14 2 18 18 C 1.47172 * 119.99654 * 181.27234 * 16 14 2 19 19 C 1.38245 * 128.47267 * 172.63526 * 18 16 14 20 20 N 1.31244 * 111.89117 * 179.80783 * 19 18 16 21 21 N 1.27339 * 120.03588 * 0.53549 * 20 19 18 22 22 S 1.56643 * 109.73781 * 359.69003 * 21 20 19 23 23 H 1.09001 * 109.46888 * 59.99916 * 1 2 3 24 24 H 1.08997 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47291 * 299.99888 * 1 2 3 26 26 H 1.08996 * 109.46977 * 295.00101 * 4 2 1 27 27 H 1.08994 * 109.46987 * 55.00381 * 4 2 1 28 28 H 0.96997 * 119.99931 * 359.97438 * 5 4 2 29 29 H 0.96998 * 119.99635 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.46624 * 263.75636 * 15 14 2 31 31 H 1.08995 * 109.47301 * 23.75993 * 15 14 2 32 32 H 1.09000 * 109.47103 * 143.76433 * 15 14 2 33 33 H 1.08008 * 124.05870 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1905 6 6 4.1837 -1.4390 2.2067 7 1 3.6467 -1.8442 3.0515 8 6 5.5672 -1.5382 2.1514 9 7 6.2218 -1.0439 1.1220 10 14 6.4998 -2.3743 3.5372 11 1 6.0438 -3.7820 3.6619 12 1 7.9546 -2.3501 3.2400 13 1 6.2423 -1.6559 4.8111 14 7 2.0184 -0.6906 -1.1962 15 6 1.6644 -2.0931 -1.4281 16 6 2.7933 -0.0355 -2.0833 17 8 3.1103 1.1203 -1.8769 18 6 3.2607 -0.7209 -3.2989 19 6 3.9363 -0.1879 -4.3809 20 7 4.2002 -1.0975 -5.2894 21 7 3.8279 -2.3023 -5.1121 22 16 3.0885 -2.4306 -3.7371 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7516 -0.1584 2.1369 27 1 1.6054 -1.7198 1.2951 28 1 3.9823 -0.4628 0.4316 29 1 7.1885 -1.1135 1.0832 30 1 2.4693 -2.7349 -1.0699 31 1 0.7453 -2.3293 -0.8919 32 1 1.5154 -2.2586 -2.4951 33 1 4.2159 0.8518 -4.4670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568259838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:25 Heat of formation + Delta-G solvation = 63.474254 kcal Electronic energy + Delta-G solvation = -18853.960039 eV Core-core repulsion = 15850.650853 eV Total energy + Delta-G solvation = -3003.309186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69712 -39.74774 -36.53459 -34.19089 -32.61196 -31.40820 -30.13349 -27.57322 -26.90977 -25.67864 -23.51894 -22.49234 -20.69716 -19.47312 -18.93242 -17.16894 -16.97595 -16.42772 -15.93641 -15.06156 -14.91908 -14.68313 -13.94861 -13.75681 -13.31266 -13.12025 -12.83262 -12.60271 -12.39351 -12.33695 -12.09438 -11.83145 -11.58409 -10.88607 -10.82512 -10.58273 -10.12796 -9.99384 -9.96561 -9.87281 -9.75423 -9.63901 -8.91816 -8.51782 -6.96107 -5.77573 -3.07884 -0.15944 0.87392 1.58687 2.08040 2.93892 3.17334 3.41448 3.46078 3.47741 4.09380 4.47218 4.57585 4.81344 4.93167 5.11641 5.21360 5.43017 5.45723 5.54815 5.64896 5.72886 5.91329 5.97202 6.07689 6.24495 6.34634 6.59928 6.78024 7.36946 7.65878 7.73439 8.17154 8.39579 9.51152 10.08260 10.43114 11.44255 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.006680 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.630936 B = 4190.305398 C = 5061.640515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.105 0.895 4 C 0.143 3.857 5 N -0.729 5.729 6 C -0.244 4.244 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.929 5.929 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.586 5.586 15 C 0.067 3.933 16 C 0.601 3.399 17 O -0.515 6.515 18 C -0.274 4.274 19 C 0.066 3.934 20 N -0.255 5.255 21 N -0.291 5.291 22 S 0.441 5.559 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.022 0.978 28 H 0.386 0.614 29 H 0.256 0.744 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -1.894 -8.195 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.123 0.877 4 C 0.015 3.985 5 N -0.374 5.374 6 C -0.375 4.375 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.319 5.319 15 C -0.078 4.078 16 C 0.386 3.614 17 O -0.391 6.391 18 C -0.415 4.415 19 C -0.101 4.101 20 N -0.119 5.119 21 N -0.271 5.271 22 S 0.577 5.423 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.220 0.780 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.537 -3.114 -8.863 15.666 hybrid contribution 0.991 0.947 1.031 1.715 sum -11.546 -2.167 -7.832 14.119 Atomic orbital electron populations 1.22090 0.94697 1.02276 1.02475 1.21531 0.93505 0.98631 0.83839 0.87665 1.21032 0.87232 0.96860 0.93417 1.42300 0.99616 1.70236 1.25215 1.19148 0.89399 1.29723 0.99241 0.91236 1.24759 0.96470 1.01524 0.98020 1.69671 1.07305 1.50506 1.30197 0.86287 0.79060 0.79208 0.81702 1.21307 1.21712 1.21235 1.47500 1.49913 1.12089 1.22366 1.22054 1.03402 0.82626 0.99743 1.16454 0.78466 0.85599 0.80850 1.90842 1.56210 1.16384 1.75644 1.28045 1.11438 0.99121 1.02895 1.24409 0.95738 1.02241 0.87685 1.70795 1.18601 0.94725 1.27799 1.78580 1.15395 1.15018 1.18090 1.82965 1.40515 1.07253 1.11523 0.92427 0.92174 0.90936 0.95069 0.95981 0.78015 0.93439 0.90262 0.88881 0.92474 0.77042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.18 37.16 0.34 -1.38 16 2 C 0.13 1.97 2.79 -67.93 -0.19 1.78 16 3 H 0.11 1.87 6.90 -51.93 -0.36 1.51 16 4 C 0.14 2.67 5.56 -4.04 -0.02 2.65 16 5 N -0.73 -18.02 5.43 -59.91 -0.33 -18.35 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 10 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.59 -8.93 2.24 -175.30 -0.39 -9.32 16 15 C 0.07 0.80 8.20 59.85 0.49 1.29 16 16 C 0.60 10.36 7.37 -12.63 -0.09 10.26 16 17 O -0.51 -10.50 16.31 5.27 0.09 -10.41 16 18 C -0.27 -4.13 6.50 -35.95 -0.23 -4.37 16 19 C 0.07 0.95 11.56 -17.80 -0.21 0.75 16 20 N -0.25 -3.94 11.54 30.36 0.35 -3.59 16 21 N -0.29 -4.33 12.51 60.35 0.75 -3.58 16 22 S 0.44 5.53 19.05 -107.50 -2.05 3.48 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 28 H 0.39 10.42 7.06 -40.82 -0.29 10.13 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16 31 H 0.09 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.06 0.56 4.56 -25.11 -0.11 0.44 16 33 H 0.21 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 293.77 15.07 4.43 4.43 Total: -1.00 -33.68 293.77 -5.11 -38.79 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.50 Total: 5.12 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.16 Total: 3.73 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 1.11 Total: -62.39 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -2.05 Total: 3.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.68 -5.11 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568259838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.265 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds