Wall clock time and date at job start Mon Mar 30 2020 01:18:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47130 * 2 1
4 4 C 1.53004 * 109.46982 * 120.00226 * 2 1 3
5 5 N 1.46503 * 109.46840 * 174.99941 * 4 2 1
6 6 C 1.36941 * 119.99551 * 180.02562 * 5 4 2
7 7 H 1.07996 * 120.00006 * 359.97438 * 6 5 4
8 8 C 1.38816 * 119.99861 * 180.02562 * 6 5 4
9 9 N 1.31619 * 119.99627 * 359.97438 * 8 6 5
10 10 Si 1.86798 * 119.99906 * 180.02562 * 8 6 5
11 11 H 1.48493 * 109.47263 * 59.99328 * 10 8 6
12 12 H 1.48507 * 109.46825 * 179.97438 * 10 8 6
13 13 H 1.48503 * 109.46804 * 299.99379 * 10 8 6
14 14 N 1.46500 * 109.47452 * 240.00189 * 2 1 3
15 15 C 1.46503 * 119.99805 * 300.00556 * 14 2 1
16 16 C 1.34778 * 120.00063 * 119.99902 * 14 2 1
17 17 O 1.21614 * 120.00253 * 1.54581 * 16 14 2
18 18 C 1.47172 * 119.99654 * 181.27234 * 16 14 2
19 19 C 1.38245 * 128.47267 * 172.63526 * 18 16 14
20 20 N 1.31244 * 111.89117 * 179.80783 * 19 18 16
21 21 N 1.27339 * 120.03588 * 0.53549 * 20 19 18
22 22 S 1.56643 * 109.73781 * 359.69003 * 21 20 19
23 23 H 1.09001 * 109.46888 * 59.99916 * 1 2 3
24 24 H 1.08997 * 109.47001 * 179.97438 * 1 2 3
25 25 H 1.08993 * 109.47291 * 299.99888 * 1 2 3
26 26 H 1.08996 * 109.46977 * 295.00101 * 4 2 1
27 27 H 1.08994 * 109.46987 * 55.00381 * 4 2 1
28 28 H 0.96997 * 119.99931 * 359.97438 * 5 4 2
29 29 H 0.96998 * 119.99635 * 180.02562 * 9 8 6
30 30 H 1.09002 * 109.46624 * 263.75636 * 15 14 2
31 31 H 1.08995 * 109.47301 * 23.75993 * 15 14 2
32 32 H 1.09000 * 109.47103 * 143.76433 * 15 14 2
33 33 H 1.08008 * 124.05870 * 359.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 3.5000 -0.8264 1.1905
6 6 4.1837 -1.4390 2.2067
7 1 3.6467 -1.8442 3.0515
8 6 5.5672 -1.5382 2.1514
9 7 6.2218 -1.0439 1.1220
10 14 6.4998 -2.3743 3.5372
11 1 6.0438 -3.7820 3.6619
12 1 7.9546 -2.3501 3.2400
13 1 6.2423 -1.6559 4.8111
14 7 2.0184 -0.6906 -1.1962
15 6 1.6644 -2.0931 -1.4281
16 6 2.7933 -0.0355 -2.0833
17 8 3.1103 1.1203 -1.8769
18 6 3.2607 -0.7209 -3.2989
19 6 3.9363 -0.1879 -4.3809
20 7 4.2002 -1.0975 -5.2894
21 7 3.8279 -2.3023 -5.1121
22 16 3.0885 -2.4306 -3.7371
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8899
26 1 1.7516 -0.1584 2.1369
27 1 1.6054 -1.7198 1.2951
28 1 3.9823 -0.4628 0.4316
29 1 7.1885 -1.1135 1.0832
30 1 2.4693 -2.7349 -1.0699
31 1 0.7453 -2.3293 -0.8919
32 1 1.5154 -2.2586 -2.4951
33 1 4.2159 0.8518 -4.4670
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568259838.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:18:25
Heat of formation + Delta-G solvation = 63.474254 kcal
Electronic energy + Delta-G solvation = -18853.960039 eV
Core-core repulsion = 15850.650853 eV
Total energy + Delta-G solvation = -3003.309186 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.089 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.69712 -39.74774 -36.53459 -34.19089 -32.61196 -31.40820 -30.13349 -27.57322
-26.90977 -25.67864 -23.51894 -22.49234 -20.69716 -19.47312 -18.93242 -17.16894
-16.97595 -16.42772 -15.93641 -15.06156 -14.91908 -14.68313 -13.94861 -13.75681
-13.31266 -13.12025 -12.83262 -12.60271 -12.39351 -12.33695 -12.09438 -11.83145
-11.58409 -10.88607 -10.82512 -10.58273 -10.12796 -9.99384 -9.96561 -9.87281
-9.75423 -9.63901 -8.91816 -8.51782 -6.96107 -5.77573 -3.07884 -0.15944
0.87392 1.58687 2.08040 2.93892 3.17334 3.41448 3.46078 3.47741
4.09380 4.47218 4.57585 4.81344 4.93167 5.11641 5.21360 5.43017
5.45723 5.54815 5.64896 5.72886 5.91329 5.97202 6.07689 6.24495
6.34634 6.59928 6.78024 7.36946 7.65878 7.73439 8.17154 8.39579
9.51152 10.08260 10.43114 11.44255
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.017241 B = 0.006680 C = 0.005530
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1623.630936 B = 4190.305398 C = 5061.640515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.127 3.873
3 H 0.105 0.895
4 C 0.143 3.857
5 N -0.729 5.729
6 C -0.244 4.244
7 H 0.070 0.930
8 C -0.011 4.011
9 N -0.929 5.929
10 Si 0.907 3.093
11 H -0.286 1.286
12 H -0.291 1.291
13 H -0.286 1.286
14 N -0.586 5.586
15 C 0.067 3.933
16 C 0.601 3.399
17 O -0.515 6.515
18 C -0.274 4.274
19 C 0.066 3.934
20 N -0.255 5.255
21 N -0.291 5.291
22 S 0.441 5.559
23 H 0.057 0.943
24 H 0.059 0.941
25 H 0.072 0.928
26 H 0.032 0.968
27 H 0.022 0.978
28 H 0.386 0.614
29 H 0.256 0.744
30 H 0.079 0.921
31 H 0.093 0.907
32 H 0.058 0.942
33 H 0.213 0.787
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.842 -1.894 -8.195 15.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.025 3.975
3 H 0.123 0.877
4 C 0.015 3.985
5 N -0.374 5.374
6 C -0.375 4.375
7 H 0.088 0.912
8 C -0.208 4.208
9 N -0.577 5.577
10 Si 0.737 3.263
11 H -0.213 1.213
12 H -0.217 1.217
13 H -0.212 1.212
14 N -0.319 5.319
15 C -0.078 4.078
16 C 0.386 3.614
17 O -0.391 6.391
18 C -0.415 4.415
19 C -0.101 4.101
20 N -0.119 5.119
21 N -0.271 5.271
22 S 0.577 5.423
23 H 0.076 0.924
24 H 0.078 0.922
25 H 0.091 0.909
26 H 0.049 0.951
27 H 0.040 0.960
28 H 0.220 0.780
29 H 0.066 0.934
30 H 0.097 0.903
31 H 0.111 0.889
32 H 0.075 0.925
33 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges -12.537 -3.114 -8.863 15.666
hybrid contribution 0.991 0.947 1.031 1.715
sum -11.546 -2.167 -7.832 14.119
Atomic orbital electron populations
1.22090 0.94697 1.02276 1.02475 1.21531 0.93505 0.98631 0.83839
0.87665 1.21032 0.87232 0.96860 0.93417 1.42300 0.99616 1.70236
1.25215 1.19148 0.89399 1.29723 0.99241 0.91236 1.24759 0.96470
1.01524 0.98020 1.69671 1.07305 1.50506 1.30197 0.86287 0.79060
0.79208 0.81702 1.21307 1.21712 1.21235 1.47500 1.49913 1.12089
1.22366 1.22054 1.03402 0.82626 0.99743 1.16454 0.78466 0.85599
0.80850 1.90842 1.56210 1.16384 1.75644 1.28045 1.11438 0.99121
1.02895 1.24409 0.95738 1.02241 0.87685 1.70795 1.18601 0.94725
1.27799 1.78580 1.15395 1.15018 1.18090 1.82965 1.40515 1.07253
1.11523 0.92427 0.92174 0.90936 0.95069 0.95981 0.78015 0.93439
0.90262 0.88881 0.92474 0.77042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.72 9.18 37.16 0.34 -1.38 16
2 C 0.13 1.97 2.79 -67.93 -0.19 1.78 16
3 H 0.11 1.87 6.90 -51.93 -0.36 1.51 16
4 C 0.14 2.67 5.56 -4.04 -0.02 2.65 16
5 N -0.73 -18.02 5.43 -59.91 -0.33 -18.35 16
6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16
7 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16
9 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16
10 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16
11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
14 N -0.59 -8.93 2.24 -175.30 -0.39 -9.32 16
15 C 0.07 0.80 8.20 59.85 0.49 1.29 16
16 C 0.60 10.36 7.37 -12.63 -0.09 10.26 16
17 O -0.51 -10.50 16.31 5.27 0.09 -10.41 16
18 C -0.27 -4.13 6.50 -35.95 -0.23 -4.37 16
19 C 0.07 0.95 11.56 -17.80 -0.21 0.75 16
20 N -0.25 -3.94 11.54 30.36 0.35 -3.59 16
21 N -0.29 -4.33 12.51 60.35 0.75 -3.58 16
22 S 0.44 5.53 19.05 -107.50 -2.05 3.48 16
23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
24 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16
25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
27 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16
28 H 0.39 10.42 7.06 -40.82 -0.29 10.13 16
29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
30 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16
31 H 0.09 0.87 6.44 -51.93 -0.33 0.53 16
32 H 0.06 0.56 4.56 -25.11 -0.11 0.44 16
33 H 0.21 2.61 8.06 -52.48 -0.42 2.19 16
LS Contribution 293.77 15.07 4.43 4.43
Total: -1.00 -33.68 293.77 -5.11 -38.79
By element:
Atomic # 1 Polarization: 8.63 SS G_CDS: -3.50 Total: 5.12 kcal
Atomic # 6 Polarization: 3.89 SS G_CDS: -0.16 Total: 3.73 kcal
Atomic # 7 Polarization: -63.50 SS G_CDS: 1.11 Total: -62.39 kcal
Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal
Atomic # 16 Polarization: 5.53 SS G_CDS: -2.05 Total: 3.48 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -33.68 -5.11 -38.79 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568259838.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.265 kcal
(2) G-P(sol) polarization free energy of solvation -33.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds