Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 119.99910 * 2 1 4 4 H 1.07997 * 119.99820 * 204.51849 * 3 2 1 5 5 C 1.38809 * 120.00059 * 24.52338 * 3 2 1 6 6 N 1.31616 * 120.00261 * 13.25583 * 5 3 2 7 7 Si 1.86800 * 119.99815 * 193.25518 * 5 3 2 8 8 H 1.48507 * 109.47174 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47405 * 120.00052 * 7 5 3 10 10 H 1.48500 * 109.47061 * 239.99961 * 7 5 3 11 11 C 1.46497 * 119.99661 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46838 * 90.00147 * 11 2 1 13 13 N 1.46497 * 109.46838 * 179.97438 * 12 11 2 14 14 C 1.46495 * 120.00339 * 90.00221 * 13 12 11 15 15 C 1.34780 * 120.00155 * 269.99838 * 13 12 11 16 16 O 1.21570 * 119.99701 * 5.41730 * 15 13 12 17 17 C 1.47752 * 120.00338 * 185.41830 * 15 13 12 18 18 C 1.39350 * 124.11495 * 186.38462 * 17 15 13 19 19 N 1.30093 * 112.14317 * 179.84526 * 18 17 15 20 20 S 1.55922 * 108.75349 * 0.40451 * 19 18 17 21 21 N 1.31490 * 124.11567 * 6.68604 * 17 15 13 22 22 H 1.08997 * 109.47153 * 275.05556 * 1 2 3 23 23 H 1.09002 * 109.46631 * 35.05121 * 1 2 3 24 24 H 1.08995 * 109.47481 * 155.05205 * 1 2 3 25 25 H 0.97002 * 120.00203 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.47323 * 330.00553 * 11 2 1 27 27 H 1.08994 * 109.47234 * 210.00042 * 11 2 1 28 28 H 1.08996 * 109.47349 * 60.00025 * 12 11 2 29 29 H 1.09000 * 109.47508 * 299.99801 * 12 11 2 30 30 H 1.09005 * 109.47640 * 95.16570 * 14 13 12 31 31 H 1.08998 * 109.47323 * 215.16822 * 14 13 12 32 32 H 1.09005 * 109.47166 * 335.16434 * 14 13 12 33 33 H 1.08000 * 123.92950 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1567 1.2281 -0.3881 5 6 1.5496 2.3338 0.4990 6 7 0.4415 2.2441 1.2035 7 14 2.3146 4.0060 0.1704 8 1 3.5478 3.8357 -0.6395 9 1 1.3483 4.8554 -0.5710 10 1 2.6565 4.6561 1.4610 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4418 13 7 3.1854 -2.9794 -1.4412 14 6 2.4535 -4.2484 -1.4406 15 6 4.5332 -2.9790 -1.4414 16 8 5.1406 -1.9306 -1.3426 17 6 5.2724 -4.2526 -1.5617 18 6 6.6562 -4.3672 -1.4438 19 7 7.0604 -5.5955 -1.5866 20 16 5.8210 -6.5034 -1.8527 21 7 4.7052 -5.4150 -1.7985 22 1 -0.3633 0.0906 1.0236 23 1 -0.3633 0.8413 -0.5902 24 1 -0.3634 -0.9317 -0.4334 25 1 0.0224 3.0462 1.5525 26 1 1.6083 -2.0282 0.5146 27 1 3.1498 -1.1383 0.5143 28 1 3.0416 -0.9517 -1.9559 29 1 1.5001 -1.8415 -1.9556 30 1 2.3519 -4.6100 -2.4639 31 1 2.9996 -4.9826 -0.8483 32 1 1.4640 -4.0970 -1.0089 33 1 7.3161 -3.5338 -1.2531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568474551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = 67.336062 kcal Electronic energy + Delta-G solvation = -18373.766203 eV Core-core repulsion = 15370.624477 eV Total energy + Delta-G solvation = -3003.141725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30437 -39.06768 -36.13863 -35.04901 -33.66746 -31.41573 -28.86475 -27.58685 -26.25768 -25.80165 -24.10800 -22.27063 -20.54641 -19.62420 -19.39824 -17.13687 -16.61751 -16.29564 -16.01456 -15.44777 -14.88678 -14.60863 -13.85166 -13.46670 -13.16139 -12.89542 -12.81199 -12.53929 -12.28927 -11.99291 -11.53347 -11.43895 -11.25512 -10.85822 -10.84038 -10.81103 -10.50035 -10.21094 -9.95355 -9.80036 -9.76056 -9.40050 -8.69637 -8.37286 -6.67866 -5.67858 -3.16299 0.22343 1.18907 1.42126 1.42663 3.04959 3.16295 3.42796 3.50153 3.54381 4.25484 4.54776 4.58441 4.93670 5.29302 5.31155 5.46629 5.58682 5.63449 5.74548 5.91496 6.13578 6.17424 6.23881 6.56681 6.64163 6.75634 6.98883 7.35946 7.47293 7.73829 7.90027 8.16635 8.45842 9.28728 9.90670 10.39383 11.36975 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037201 B = 0.004086 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.494823 B = 6851.618445 C = 7447.995824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.254 4.254 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.142 3.858 12 C 0.094 3.906 13 N -0.589 5.589 14 C 0.087 3.913 15 C 0.591 3.409 16 O -0.515 6.515 17 C 0.021 3.979 18 C 0.090 3.910 19 N -0.576 5.576 20 S 0.687 5.313 21 N -0.537 5.537 22 H 0.032 0.968 23 H 0.039 0.961 24 H -0.002 1.002 25 H 0.251 0.749 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -19.241 -6.634 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.322 5.322 3 C -0.384 4.384 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.733 3.267 8 H -0.201 1.201 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.013 3.987 12 C -0.031 4.031 13 N -0.322 5.322 14 C -0.057 4.057 15 C 0.372 3.628 16 O -0.389 6.389 17 C -0.154 4.154 18 C -0.104 4.104 19 N -0.417 5.417 20 S 0.729 5.271 21 N -0.386 5.386 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.016 0.984 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.973 -20.605 -6.826 22.799 hybrid contribution 0.364 2.635 0.140 2.663 sum 7.337 -17.970 -6.686 20.530 Atomic orbital electron populations 1.20814 0.82633 0.95337 0.99593 1.43858 1.01773 1.00564 1.85976 1.19298 0.99266 0.85605 1.34212 0.91089 1.25048 0.98032 0.98656 0.97827 1.70075 1.20832 1.27306 1.37147 0.86190 0.78662 0.84253 0.77555 1.20111 1.21652 1.21735 1.20994 0.96669 0.88531 0.92485 1.22664 0.95424 0.82691 1.02273 1.47803 1.04771 1.08845 1.70758 1.21963 0.96755 0.84841 1.02117 1.16854 0.82248 0.85296 0.78372 1.90884 1.67678 1.30721 1.49657 1.22718 0.93049 0.93173 1.06449 1.23832 0.93642 0.94274 0.98672 1.72271 1.36988 1.09292 1.23151 1.79096 0.81371 1.19540 1.47062 1.73018 1.37707 1.06790 1.21131 0.94927 0.94177 0.98381 0.93869 0.94732 0.92916 0.89674 0.90968 0.92529 0.90185 0.91135 0.76888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 8.99 59.85 0.54 4.49 16 2 N -0.60 -15.36 2.92 -181.12 -0.53 -15.89 16 3 C -0.25 -7.21 9.64 -15.06 -0.15 -7.35 16 4 H 0.07 2.03 7.86 -52.49 -0.41 1.61 16 5 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 6 N -0.91 -26.95 10.82 55.49 0.60 -26.35 16 7 Si 0.90 22.44 29.57 -169.99 -5.03 17.41 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.14 3.02 5.97 -4.04 -0.02 2.99 16 12 C 0.09 1.69 5.67 -4.04 -0.02 1.67 16 13 N -0.59 -9.07 2.87 -182.73 -0.52 -9.59 16 14 C 0.09 1.03 9.23 59.84 0.55 1.58 16 15 C 0.59 9.48 7.66 -12.37 -0.09 9.39 16 16 O -0.51 -9.98 16.45 5.30 0.09 -9.89 16 17 C 0.02 0.27 6.51 -83.71 -0.54 -0.27 16 18 C 0.09 1.02 11.23 -17.87 -0.20 0.82 16 19 N -0.58 -6.14 11.41 19.42 0.22 -5.92 16 20 S 0.69 5.65 23.69 -107.50 -2.55 3.10 16 21 N -0.54 -5.82 7.94 23.17 0.18 -5.64 16 22 H 0.03 0.87 7.31 -51.93 -0.38 0.49 16 23 H 0.04 1.05 7.44 -51.93 -0.39 0.66 16 24 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 28 H 0.08 1.75 7.50 -51.93 -0.39 1.36 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.08 0.90 5.89 -51.93 -0.31 0.59 16 32 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 33 H 0.21 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -32.69 297.70 -7.02 -39.71 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -3.94 Total: -4.73 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -0.03 Total: 13.30 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.05 Total: -63.39 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -2.55 Total: 3.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.69 -7.02 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568474551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.050 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds