Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 119.99910 * 2 1 4 4 H 1.07997 * 119.99820 * 204.51849 * 3 2 1 5 5 C 1.38809 * 120.00059 * 24.52338 * 3 2 1 6 6 N 1.31616 * 120.00261 * 13.25583 * 5 3 2 7 7 Si 1.86800 * 119.99815 * 193.25518 * 5 3 2 8 8 H 1.48507 * 109.47174 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47405 * 120.00052 * 7 5 3 10 10 H 1.48500 * 109.47061 * 239.99961 * 7 5 3 11 11 C 1.46497 * 119.99661 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46838 * 90.00147 * 11 2 1 13 13 N 1.46497 * 109.46838 * 179.97438 * 12 11 2 14 14 C 1.46495 * 120.00339 * 90.00221 * 13 12 11 15 15 C 1.34780 * 120.00155 * 269.99838 * 13 12 11 16 16 O 1.21570 * 119.99701 * 5.41730 * 15 13 12 17 17 C 1.47752 * 120.00338 * 185.41830 * 15 13 12 18 18 C 1.39350 * 124.11495 * 186.38462 * 17 15 13 19 19 N 1.30093 * 112.14317 * 179.84526 * 18 17 15 20 20 S 1.55922 * 108.75349 * 0.40451 * 19 18 17 21 21 N 1.31490 * 124.11567 * 6.68604 * 17 15 13 22 22 H 1.08997 * 109.47153 * 275.05556 * 1 2 3 23 23 H 1.09002 * 109.46631 * 35.05121 * 1 2 3 24 24 H 1.08995 * 109.47481 * 155.05205 * 1 2 3 25 25 H 0.97002 * 120.00203 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.47323 * 330.00553 * 11 2 1 27 27 H 1.08994 * 109.47234 * 210.00042 * 11 2 1 28 28 H 1.08996 * 109.47349 * 60.00025 * 12 11 2 29 29 H 1.09000 * 109.47508 * 299.99801 * 12 11 2 30 30 H 1.09005 * 109.47640 * 95.16570 * 14 13 12 31 31 H 1.08998 * 109.47323 * 215.16822 * 14 13 12 32 32 H 1.09005 * 109.47166 * 335.16434 * 14 13 12 33 33 H 1.08000 * 123.92950 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1567 1.2281 -0.3881 5 6 1.5496 2.3338 0.4990 6 7 0.4415 2.2441 1.2035 7 14 2.3146 4.0060 0.1704 8 1 3.5478 3.8357 -0.6395 9 1 1.3483 4.8554 -0.5710 10 1 2.6565 4.6561 1.4610 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4418 13 7 3.1854 -2.9794 -1.4412 14 6 2.4535 -4.2484 -1.4406 15 6 4.5332 -2.9790 -1.4414 16 8 5.1406 -1.9306 -1.3426 17 6 5.2724 -4.2526 -1.5617 18 6 6.6562 -4.3672 -1.4438 19 7 7.0604 -5.5955 -1.5866 20 16 5.8210 -6.5034 -1.8527 21 7 4.7052 -5.4150 -1.7985 22 1 -0.3633 0.0906 1.0236 23 1 -0.3633 0.8413 -0.5902 24 1 -0.3634 -0.9317 -0.4334 25 1 0.0224 3.0462 1.5525 26 1 1.6083 -2.0282 0.5146 27 1 3.1498 -1.1383 0.5143 28 1 3.0416 -0.9517 -1.9559 29 1 1.5001 -1.8415 -1.9556 30 1 2.3519 -4.6100 -2.4639 31 1 2.9996 -4.9826 -0.8483 32 1 1.4640 -4.0970 -1.0089 33 1 7.3161 -3.5338 -1.2531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568474551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = 44.573526 kcal Electronic energy + Delta-G solvation = -18374.753260 eV Core-core repulsion = 15370.624477 eV Total energy + Delta-G solvation = -3004.128783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.24839 -40.26128 -37.82137 -36.56653 -34.64860 -33.38676 -30.45649 -28.61037 -27.89643 -27.37824 -25.61762 -23.54231 -22.27997 -20.57928 -20.42353 -18.78263 -18.16609 -17.40702 -17.28004 -16.75840 -16.27457 -15.97396 -15.57723 -15.14876 -14.77567 -14.39871 -13.97371 -13.91358 -13.54609 -13.11634 -13.09404 -12.79914 -12.79252 -12.43174 -12.41893 -12.19352 -12.11433 -11.94245 -11.77655 -11.59645 -11.09559 -10.69873 -10.23224 -9.80141 -8.73337 -7.84086 -5.35491 -0.64781 0.36241 0.45748 0.66972 1.44894 1.46236 1.57969 1.88535 2.00949 2.51726 3.28474 3.30991 3.55984 3.77220 4.03283 4.13563 4.38252 4.42970 4.48311 4.62453 4.78296 4.84566 4.94637 5.02215 5.13956 5.30091 5.34404 5.54729 5.65337 5.71461 6.27103 6.33900 6.95319 7.15260 7.84963 8.27269 9.18115 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037201 B = 0.004086 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.494823 B = 6851.618445 C = 7447.995824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.265 4.265 4 H 0.060 0.940 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.272 1.272 9 H -0.285 1.285 10 H -0.290 1.290 11 C 0.147 3.853 12 C 0.113 3.887 13 N -0.591 5.591 14 C 0.087 3.913 15 C 0.588 3.412 16 O -0.562 6.562 17 C -0.001 4.001 18 C 0.086 3.914 19 N -0.599 5.599 20 S 0.794 5.206 21 N -0.547 5.547 22 H 0.006 0.994 23 H 0.016 0.984 24 H 0.041 0.959 25 H 0.250 0.750 26 H 0.055 0.945 27 H 0.025 0.975 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.066 -21.625 -7.506 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.395 4.395 4 H 0.078 0.922 5 C -0.243 4.243 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.197 1.197 9 H -0.211 1.211 10 H -0.216 1.216 11 C 0.019 3.981 12 C -0.012 4.012 13 N -0.323 5.323 14 C -0.055 4.055 15 C 0.371 3.629 16 O -0.440 6.440 17 C -0.173 4.173 18 C -0.105 4.105 19 N -0.441 5.441 20 S 0.835 5.165 21 N -0.400 5.400 22 H 0.024 0.976 23 H 0.034 0.966 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.167 -23.021 -7.708 25.313 hybrid contribution 0.350 3.090 0.388 3.134 sum 7.518 -19.931 -7.319 22.524 Atomic orbital electron populations 1.20603 0.82085 0.96479 0.97888 1.44071 1.02381 1.01262 1.86295 1.19452 0.99094 0.87167 1.33772 0.92231 1.25759 0.98737 1.01802 0.97973 1.70214 1.21956 1.27904 1.38103 0.85231 0.77982 0.80152 0.77271 1.19689 1.21135 1.21639 1.21041 0.95160 0.87387 0.94486 1.22113 0.96026 0.83582 0.99483 1.47824 1.04883 1.09062 1.70503 1.22160 0.96896 0.83104 1.03363 1.17272 0.82361 0.86048 0.77188 1.90850 1.68644 1.32810 1.51667 1.22071 0.93175 0.92384 1.09675 1.23752 0.93252 0.94768 0.98753 1.72133 1.38743 1.09337 1.23912 1.78739 0.78786 1.16470 1.42476 1.72718 1.39461 1.06825 1.20969 0.97557 0.96566 0.94076 0.94111 0.92642 0.95622 0.92679 0.88968 0.91060 0.89362 0.89984 0.76732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.53 8.99 127.77 1.15 9.68 16 2 N -0.62 -31.92 2.92 -726.95 -2.12 -34.04 16 3 C -0.26 -15.32 9.64 84.03 0.81 -14.51 16 4 H 0.06 3.52 7.86 -2.91 -0.02 3.49 16 5 C -0.05 -2.75 5.09 84.86 0.43 -2.31 16 6 N -0.94 -56.39 10.82 21.65 0.23 -56.16 16 7 Si 0.97 46.86 29.57 68.60 2.03 48.89 16 8 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 11 C 0.15 6.24 5.97 86.38 0.52 6.76 16 12 C 0.11 4.05 5.67 86.38 0.49 4.54 16 13 N -0.59 -17.66 2.87 -850.29 -2.44 -20.11 16 14 C 0.09 1.82 9.23 127.77 1.18 3.00 16 15 C 0.59 18.92 7.66 86.76 0.66 19.59 16 16 O -0.56 -22.68 16.45 -3.94 -0.06 -22.74 16 17 C 0.00 -0.03 6.51 41.98 0.27 0.24 16 18 C 0.09 1.88 11.23 85.22 0.96 2.84 16 19 N -0.60 -11.39 11.41 -92.46 -1.05 -12.45 16 20 S 0.79 10.30 23.69 -56.49 -1.34 8.96 16 21 N -0.55 -10.39 7.94 -80.61 -0.64 -11.03 16 22 H 0.01 0.33 7.31 -2.39 -0.02 0.31 16 23 H 0.02 0.83 7.44 -2.39 -0.02 0.82 16 24 H 0.04 1.62 8.03 -2.39 -0.02 1.60 16 25 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 27 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 28 H 0.05 2.32 7.50 -2.39 -0.02 2.30 16 29 H 0.09 2.94 8.07 -2.39 -0.02 2.92 16 30 H 0.07 1.31 8.10 -2.38 -0.02 1.29 16 31 H 0.09 1.72 5.89 -2.39 -0.01 1.71 16 32 H 0.08 1.53 8.03 -2.38 -0.02 1.51 16 33 H 0.22 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -71.93 297.70 2.19 -69.73 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: 1.12 Total: -0.90 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 6.47 Total: 29.82 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -6.02 Total: -133.77 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 10.30 SS G_CDS: -1.34 Total: 8.96 kcal Total: -71.93 2.19 -69.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568474551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.308 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds