Wall clock time and date at job start Mon Mar 30 2020 00:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86799 * 119.99799 * 2 1 4 4 H 1.48506 * 109.47293 * 268.15003 * 3 2 1 5 5 H 1.48493 * 109.47343 * 28.14971 * 3 2 1 6 6 H 1.48504 * 109.47439 * 148.15071 * 3 2 1 7 7 C 1.39089 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99501 * 349.68409 * 7 2 1 9 9 N 1.36849 * 120.00124 * 169.67811 * 7 2 1 10 10 C 1.34775 * 119.99966 * 137.03061 * 9 7 2 11 11 O 1.21515 * 119.99990 * 184.23159 * 10 9 7 12 12 C 1.48290 * 119.99702 * 4.22303 * 10 9 7 13 13 N 1.32565 * 119.19881 * 353.52389 * 12 10 9 14 14 C 1.32097 * 120.75353 * 179.75417 * 13 12 10 15 15 C 1.38816 * 119.18026 * 0.51063 * 14 13 12 16 16 C 1.38820 * 118.52643 * 359.74191 * 15 14 13 17 17 N 1.32104 * 119.17326 * 0.02562 * 16 15 14 18 18 C 1.39366 * 120.00019 * 317.03369 * 9 7 2 19 19 C 1.39078 * 119.69528 * 320.40246 * 18 9 7 20 20 C 1.38385 * 119.09428 * 179.72791 * 19 18 9 21 21 C 1.38828 * 118.49092 * 0.56009 * 20 19 18 22 22 C 1.38160 * 119.31086 * 359.43816 * 21 20 19 23 23 N 1.31869 * 120.85570 * 0.29655 * 22 21 20 24 24 H 0.96998 * 120.00714 * 0.02562 * 1 2 3 25 25 H 1.08006 * 120.41141 * 180.22985 * 14 13 12 26 26 H 1.07997 * 120.73941 * 179.77347 * 15 14 13 27 27 H 1.07996 * 120.41394 * 180.02562 * 16 15 14 28 28 H 1.07993 * 120.45278 * 359.97438 * 19 18 9 29 29 H 1.08000 * 120.75620 * 180.27550 * 20 19 18 30 30 H 1.07996 * 120.34359 * 179.71339 * 21 20 19 31 31 H 1.08006 * 119.56832 * 180.27735 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.5335 2.0239 -1.3994 5 1 1.4253 2.6636 0.6605 6 1 3.5243 1.4519 0.7388 7 6 2.0084 -1.2045 0.0005 8 1 1.4815 -2.1321 0.1684 9 7 3.3603 -1.2141 -0.2118 10 6 4.1554 -1.9978 0.5432 11 8 5.3620 -1.9495 0.4072 12 6 3.5579 -2.9189 1.5399 13 7 2.2529 -2.8671 1.7676 14 6 1.6877 -3.6765 2.6453 15 6 2.4794 -4.5810 3.3397 16 6 3.8429 -4.6044 3.0799 17 7 4.3425 -3.7701 2.1857 18 6 3.9148 -0.4135 -1.2087 19 6 3.2572 -0.2749 -2.4263 20 6 3.8161 0.5277 -3.4054 21 6 5.0240 1.1568 -3.1362 22 6 5.6219 0.9741 -1.9041 23 7 5.0630 0.2076 -0.9881 24 1 -0.4851 0.8400 -0.0004 25 1 0.6234 -3.6321 2.8237 26 1 2.0443 -5.2519 4.0655 27 1 4.4872 -5.2960 3.6023 28 1 2.3211 -0.7833 -2.6038 29 1 3.3261 0.6579 -4.3590 30 1 5.4891 1.7862 -3.8804 31 1 6.5594 1.4652 -1.6886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586334133.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:38 Heat of formation + Delta-G solvation = 80.767629 kcal Electronic energy + Delta-G solvation = -20272.212489 eV Core-core repulsion = 17134.209249 eV Total energy + Delta-G solvation = -3138.003240 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30443 -41.46544 -39.62693 -37.11202 -34.64850 -34.11718 -33.33825 -33.08122 -31.09843 -27.35170 -26.45549 -25.38947 -24.36770 -23.94137 -21.64757 -20.31509 -19.04611 -18.10654 -17.78805 -17.36566 -17.05809 -16.68654 -16.29904 -16.25488 -15.47621 -15.28791 -15.16150 -14.91390 -14.52561 -14.25073 -14.17831 -13.92870 -13.18251 -12.85492 -12.74370 -12.23774 -11.90869 -11.79798 -11.48668 -10.95192 -10.85183 -10.56538 -10.55265 -10.19350 -9.91159 -9.28278 -8.46431 -6.15403 -0.50748 0.20585 0.29418 0.45406 1.11754 1.19678 1.38628 1.75348 1.93302 2.15849 2.76689 2.93765 3.10115 3.22680 3.39484 3.75437 3.79405 4.04827 4.06821 4.23714 4.26360 4.32814 4.44539 4.51854 4.87190 4.89929 5.10785 5.29411 5.41676 5.44049 5.81187 6.04617 6.15325 6.34631 6.75842 7.01668 7.10892 7.29780 7.60060 8.60435 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.008355 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.137224 B = 3350.543325 C = 4188.571802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.059 3.941 3 Si 0.882 3.118 4 H -0.248 1.248 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.313 4.313 8 H 0.137 0.863 9 N -0.402 5.402 10 C 0.534 3.466 11 O -0.550 6.550 12 C 0.264 3.736 13 N -0.465 5.465 14 C 0.112 3.888 15 C -0.182 4.182 16 C 0.123 3.877 17 N -0.511 5.511 18 C 0.315 3.685 19 C -0.184 4.184 20 C -0.063 4.063 21 C -0.189 4.189 22 C 0.093 3.907 23 N -0.527 5.527 24 H 0.279 0.721 25 H 0.197 0.803 26 H 0.204 0.796 27 H 0.213 0.787 28 H 0.137 0.863 29 H 0.175 0.825 30 H 0.180 0.820 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -4.269 0.134 4.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.147 4.147 3 Si 0.709 3.291 4 H -0.173 1.173 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.441 4.441 8 H 0.154 0.846 9 N -0.118 5.118 10 C 0.322 3.678 11 O -0.427 6.427 12 C -0.004 4.004 13 N -0.182 5.182 14 C -0.054 4.054 15 C -0.203 4.203 16 C -0.043 4.043 17 N -0.227 5.227 18 C 0.089 3.911 19 C -0.207 4.207 20 C -0.088 4.088 21 C -0.210 4.210 22 C -0.065 4.065 23 N -0.242 5.242 24 H 0.090 0.910 25 H 0.214 0.786 26 H 0.221 0.779 27 H 0.230 0.770 28 H 0.155 0.845 29 H 0.192 0.808 30 H 0.198 0.802 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.076 -3.659 0.234 4.786 hybrid contribution -0.620 0.509 0.202 0.827 sum 2.457 -3.150 0.435 4.018 Atomic orbital electron populations 1.69581 1.06225 1.28536 1.47322 1.25518 0.95454 0.98767 0.94962 0.86699 0.79180 0.82840 0.80400 1.17259 1.21139 1.21081 1.19727 0.78708 0.97054 1.48565 0.84619 1.41442 1.08032 1.35576 1.26714 1.18276 0.85488 0.83081 0.80920 1.90660 1.14527 1.69745 1.67817 1.22215 0.87282 0.94594 0.96344 1.69488 1.10830 1.22015 1.15824 1.24284 1.03040 0.89079 0.88963 1.23637 0.95277 1.00284 1.01111 1.24102 0.95210 0.93843 0.91101 1.68195 1.41070 1.05234 1.08201 1.18941 0.90634 0.92991 0.88528 1.21903 1.03109 1.03425 0.92298 1.21895 0.94866 0.92790 0.99297 1.22455 0.96691 1.02915 0.98898 1.23173 0.99826 0.93697 0.89824 1.67370 1.11390 1.09068 1.36353 0.91032 0.78618 0.77936 0.77012 0.84533 0.80787 0.80244 0.80367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.17 13.95 21.68 0.30 -47.87 16 2 C 0.06 3.19 5.14 84.98 0.44 3.63 16 3 Si 0.88 44.96 24.46 68.60 1.68 46.64 16 4 H -0.25 -11.83 6.34 99.48 0.63 -11.20 16 5 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.28 -16.15 6.83 99.48 0.68 -15.47 16 7 C -0.31 -17.02 7.37 84.11 0.62 -16.40 16 8 H 0.14 7.61 5.89 -2.91 -0.02 7.59 16 9 N -0.40 -21.81 2.39 -467.01 -1.12 -22.93 16 10 C 0.53 29.42 7.57 86.92 0.66 30.08 16 11 O -0.55 -32.39 15.81 -3.76 -0.06 -32.45 16 12 C 0.26 12.55 7.51 137.55 1.03 13.58 16 13 N -0.47 -20.31 6.29 -189.18 -1.19 -21.50 16 14 C 0.11 3.39 11.30 84.79 0.96 4.35 16 15 C -0.18 -3.97 10.18 22.55 0.23 -3.74 16 16 C 0.12 3.32 11.30 84.79 0.96 4.28 16 17 N -0.51 -21.02 10.14 -189.18 -1.92 -22.94 16 18 C 0.31 15.89 3.52 132.93 0.47 16.36 16 19 C -0.18 -7.96 7.35 22.51 0.17 -7.80 16 20 C -0.06 -2.06 9.94 22.45 0.22 -1.83 16 21 C -0.19 -5.68 10.11 22.39 0.23 -5.46 16 22 C 0.09 3.48 11.18 84.67 0.95 4.43 16 23 N -0.53 -26.03 8.09 -192.98 -1.56 -27.60 16 24 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.20 4.61 8.06 -2.91 -0.02 4.58 16 26 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 27 H 0.21 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.14 5.98 7.65 -2.91 -0.02 5.96 16 29 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.18 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -81.40 274.10 4.12 -77.28 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.07 Total: 9.89 kcal Atomic # 6 Polarization: 34.56 SS G_CDS: 6.92 Total: 41.48 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -5.49 Total: -142.83 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.06 Total: -32.45 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.68 Total: 46.64 kcal Total: -81.40 4.12 -77.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586334133.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.043 kcal (2) G-P(sol) polarization free energy of solvation -81.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds