Wall clock time and date at job start Mon Mar 30 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86797 * 119.99959 * 2 1 4 4 H 1.48490 * 109.47107 * 269.99994 * 3 2 1 5 5 H 1.48502 * 109.47114 * 29.99824 * 3 2 1 6 6 H 1.48503 * 109.47135 * 149.99446 * 3 2 1 7 7 C 1.40026 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.41335 * 120.00396 * 0.02562 * 7 2 1 10 10 C 1.40613 * 119.78933 * 179.97438 * 9 7 2 11 11 C 1.38306 * 119.13170 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.67279 * 0.02562 * 11 10 9 13 13 C 1.39652 * 119.49743 * 359.97438 * 12 11 10 14 14 N 1.39164 * 119.58199 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00507 * 185.31856 * 14 13 12 16 16 O 1.21479 * 119.99409 * 354.84745 * 15 14 13 17 17 C 1.48406 * 120.00259 * 174.84978 * 15 14 13 18 18 C 1.39558 * 120.55032 * 179.97438 * 17 15 14 19 19 C 1.38749 * 118.26181 * 179.74860 * 18 17 15 20 20 N 1.32211 * 119.14635 * 0.24998 * 19 18 17 21 21 C 1.31886 * 121.04317 * 359.97438 * 20 19 18 22 22 N 1.31576 * 121.91934 * 0.02562 * 21 20 19 23 23 N 1.31950 * 120.84367 * 0.28120 * 13 12 11 24 24 H 0.96997 * 119.99925 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.43518 * 0.04597 * 10 9 7 26 26 H 1.08004 * 120.66305 * 179.97438 * 11 10 9 27 27 H 1.08005 * 120.25053 * 180.02562 * 12 11 10 28 28 H 0.97007 * 119.99528 * 5.31368 * 14 13 12 29 29 H 1.08003 * 120.87108 * 0.02562 * 18 17 15 30 30 H 1.07998 * 120.42883 * 180.22848 * 19 18 17 31 31 H 1.08003 * 119.04178 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7002 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6518 0.0005 11 6 1.3034 -4.8416 0.0000 12 6 -0.0827 -4.7937 -0.0011 13 6 -0.7279 -3.5551 -0.0010 14 7 -2.1186 -3.5049 -0.0016 15 6 -2.7502 -2.3192 -0.1097 16 8 -2.1088 -1.2875 -0.1124 17 6 -4.2290 -2.2740 -0.2254 18 6 -4.8948 -1.0526 -0.3374 19 6 -6.2778 -1.0659 -0.4482 20 7 -6.9134 -2.2252 -0.4389 21 6 -6.2536 -3.3617 -0.3269 22 7 -4.9427 -3.3974 -0.2194 23 7 -0.0357 -2.4317 -0.0055 24 1 -0.4850 0.8400 -0.0004 25 1 3.0885 -3.6560 0.0013 26 1 1.8218 -5.7891 -0.0004 27 1 -0.6587 -5.7073 -0.0011 28 1 -2.6334 -4.3234 0.0759 29 1 -4.3475 -0.1215 -0.3423 30 1 -6.8281 -0.1413 -0.5405 31 1 -6.8055 -4.2901 -0.3225 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598032109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:44 Heat of formation + Delta-G solvation = 58.919412 kcal Electronic energy + Delta-G solvation = -19535.887340 eV Core-core repulsion = 16396.936690 eV Total energy + Delta-G solvation = -3138.950650 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18677 -40.82006 -39.24004 -36.07396 -35.10373 -34.64259 -33.08224 -32.25032 -30.98656 -27.68656 -26.59568 -25.35063 -23.87196 -23.12568 -21.53653 -19.92786 -18.89100 -18.62680 -17.78487 -16.54997 -16.45043 -16.43255 -16.35844 -16.28717 -15.53466 -15.35804 -14.99479 -14.65339 -14.52178 -14.00608 -13.73792 -12.90070 -12.74276 -12.57503 -12.34210 -12.02398 -11.87124 -11.79027 -11.56611 -11.24969 -10.91336 -10.77726 -10.40145 -9.93259 -9.20413 -8.89104 -8.08265 -6.43527 -0.55691 -0.06532 0.89805 1.22738 1.41242 1.52023 1.55056 1.98016 2.03468 2.26854 2.82166 2.90643 3.00454 3.19948 3.55462 3.80103 4.02087 4.04818 4.33506 4.57456 4.61777 4.74932 4.86705 4.94223 5.01692 5.26158 5.28660 5.64780 5.71959 5.81238 5.90562 6.11926 6.30821 6.61209 6.77007 6.93279 7.04276 7.40058 8.27597 8.55321 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.006226 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.142290 B = 4496.131436 C = 5932.531409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.012 3.988 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.324 4.324 11 C -0.033 4.033 12 C -0.343 4.343 13 C 0.345 3.655 14 N -0.637 5.637 15 C 0.517 3.483 16 O -0.433 6.433 17 C 0.125 3.875 18 C -0.177 4.177 19 C 0.164 3.836 20 N -0.518 5.518 21 C 0.290 3.710 22 N -0.512 5.512 23 N -0.509 5.509 24 H 0.273 0.727 25 H 0.108 0.892 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.424 0.576 29 H 0.158 0.842 30 H 0.216 0.784 31 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.936 -2.343 -0.592 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.213 4.213 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.494 4.494 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.347 4.347 11 C -0.057 4.057 12 C -0.369 4.369 13 C 0.107 3.893 14 N -0.285 5.285 15 C 0.299 3.701 16 O -0.297 6.297 17 C -0.022 4.022 18 C -0.200 4.200 19 C -0.003 4.003 20 N -0.232 5.232 21 C 0.003 3.997 22 N -0.230 5.230 23 N -0.228 5.228 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.157 0.843 27 H 0.148 0.852 28 H 0.263 0.737 29 H 0.176 0.824 30 H 0.232 0.768 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.588 -1.458 -0.602 12.686 hybrid contribution 1.197 0.108 0.045 1.203 sum -11.391 -1.349 -0.556 11.484 Atomic orbital electron populations 1.70484 1.07424 1.28230 1.25350 1.27034 0.96024 1.04045 0.94199 0.85291 0.79105 0.76659 0.79137 1.19106 1.19630 1.18037 1.19928 0.94559 0.90387 1.44545 0.89434 1.18884 0.87747 0.93535 0.88751 1.21839 0.99367 0.93708 1.19742 1.21043 0.93298 0.97531 0.93827 1.20964 0.95339 0.95570 1.25009 1.19079 0.84476 0.91457 0.94245 1.43110 1.03964 1.10231 1.71228 1.18769 0.86404 0.85059 0.79911 1.91244 1.64691 1.32255 1.41536 1.21700 0.93775 0.91243 0.95490 1.23131 0.97616 0.99747 0.99528 1.23922 0.90204 0.98114 0.88104 1.68474 1.41972 0.99723 1.13070 1.25713 0.86339 0.98015 0.89664 1.68376 1.10490 1.30542 1.13563 1.68632 1.07605 1.25128 1.21474 0.91654 0.87412 0.84284 0.85211 0.73731 0.82385 0.76783 0.74766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -39.29 8.99 21.84 0.20 -39.09 16 2 C 0.01 0.66 5.50 85.29 0.47 1.12 16 3 Si 0.98 39.94 29.56 68.60 2.03 41.97 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.46 -26.18 9.14 23.47 0.21 -25.96 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.24 13.65 6.55 40.21 0.26 13.91 16 10 C -0.32 -16.33 9.83 22.87 0.22 -16.10 16 11 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 12 C -0.34 -15.08 9.95 22.72 0.23 -14.86 16 13 C 0.35 17.24 7.43 133.27 0.99 18.23 16 14 N -0.64 -26.68 5.37 -310.53 -1.67 -28.35 16 15 C 0.52 22.10 7.79 86.95 0.68 22.78 16 16 O -0.43 -22.26 12.18 -3.65 -0.04 -22.31 16 17 C 0.12 4.07 6.79 41.98 0.29 4.35 16 18 C -0.18 -4.73 9.72 22.71 0.22 -4.51 16 19 C 0.16 3.21 11.31 84.76 0.96 4.17 16 20 N -0.52 -10.90 10.42 -200.10 -2.09 -12.99 16 21 C 0.29 6.10 12.27 180.92 2.22 8.32 16 22 N -0.51 -14.10 9.71 -189.17 -1.84 -15.93 16 23 N -0.51 -29.43 5.73 -186.41 -1.07 -30.50 16 24 H 0.27 14.30 8.29 -92.71 -0.77 13.53 16 25 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 26 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 27 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.42 14.59 8.09 -92.70 -0.75 13.84 16 29 H 0.16 4.28 7.74 -2.91 -0.02 4.25 16 30 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.24 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -73.25 281.97 2.94 -70.31 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.44 Total: 26.64 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.98 Total: 10.24 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -6.46 Total: -126.86 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -73.25 2.94 -70.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598032109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.234 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds