Wall clock time and date at job start Mon Mar 30 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86796 * 119.99892 * 2 1 4 4 H 1.48497 * 109.47289 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47488 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47008 * 119.99742 * 3 2 1 7 7 C 1.40022 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00232 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.40612 * 119.78892 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.13488 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.66806 * 359.97438 * 11 10 9 13 13 C 1.39658 * 119.49584 * 0.02562 * 12 11 10 14 14 N 1.39173 * 119.57516 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00110 * 185.31330 * 14 13 12 16 16 O 1.21515 * 119.99754 * 354.84972 * 15 14 13 17 17 C 1.48106 * 120.00545 * 174.84624 * 15 14 13 18 18 C 1.39739 * 120.18874 * 180.02562 * 17 15 14 19 19 C 1.38810 * 117.89811 * 180.02562 * 18 17 15 20 20 C 1.38582 * 118.06956 * 0.24781 * 19 18 17 21 21 N 1.32168 * 120.07046 * 359.48768 * 20 19 18 22 22 N 1.28353 * 122.30714 * 0.53638 * 21 20 19 23 23 N 1.31939 * 120.84822 * 0.25462 * 13 12 11 24 24 H 0.96993 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.43920 * 0.04138 * 10 9 7 26 26 H 1.07997 * 120.66871 * 179.97438 * 11 10 9 27 27 H 1.08003 * 120.25163 * 180.02562 * 12 11 10 28 28 H 0.97006 * 119.99978 * 5.30643 * 14 13 12 29 29 H 1.08000 * 121.04653 * 0.04575 * 18 17 15 30 30 H 1.08001 * 120.96802 * 179.97438 * 19 18 17 31 31 H 1.08001 * 119.96227 * 179.74926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3010 -2.4367 -0.0005 10 6 2.0086 -3.6518 -0.0005 11 6 1.3034 -4.8416 -0.0011 12 6 -0.0827 -4.7936 -0.0011 13 6 -0.7278 -3.5550 -0.0010 14 7 -2.1186 -3.5049 -0.0016 15 6 -2.7502 -2.3192 -0.1096 16 8 -2.1087 -1.2872 -0.1124 17 6 -4.2260 -2.2740 -0.2252 18 6 -4.8848 -1.0468 -0.3379 19 6 -6.2689 -1.0598 -0.4429 20 6 -6.9127 -2.2868 -0.4243 21 7 -6.2106 -3.4016 -0.3193 22 7 -4.9307 -3.3996 -0.2217 23 7 -0.0357 -2.4317 -0.0061 24 1 -0.4850 0.8400 -0.0004 25 1 3.0886 -3.6560 0.0001 26 1 1.8217 -5.7891 -0.0015 27 1 -0.6588 -5.7072 -0.0011 28 1 -2.6335 -4.3234 0.0758 29 1 -4.3343 -0.1176 -0.3436 30 1 -6.8281 -0.1402 -0.5320 31 1 -7.9891 -2.3323 -0.4998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598038477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:41 Heat of formation + Delta-G solvation = 87.880986 kcal Electronic energy + Delta-G solvation = -19537.545249 eV Core-core repulsion = 16399.850467 eV Total energy + Delta-G solvation = -3137.694782 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05020 -39.15042 -37.46035 -34.30237 -33.31422 -32.94966 -32.51381 -30.33388 -29.07778 -25.86450 -25.12120 -24.52314 -22.22030 -21.28583 -19.92456 -18.18652 -17.52663 -17.08568 -16.48313 -15.99950 -15.24362 -14.71597 -14.45334 -14.41475 -13.93658 -13.67296 -13.47262 -13.20927 -12.81479 -12.12344 -11.98114 -11.41283 -11.17592 -10.99406 -10.68284 -10.49761 -10.36121 -10.04078 -9.99480 -9.84793 -9.69940 -9.33222 -9.05077 -7.99927 -7.31182 -7.01130 -6.18868 -4.42763 0.53387 0.71680 2.70313 3.00715 3.13539 3.16178 3.23697 3.31508 3.49141 4.01406 4.03373 4.03957 4.39796 4.62201 4.67570 4.89748 4.96601 5.18072 5.66716 5.82781 6.00203 6.04645 6.12520 6.48692 6.64027 6.81213 6.82698 7.18933 7.51742 7.57332 7.79493 7.98804 8.14241 8.39751 8.53376 8.68077 8.98861 9.07807 10.18780 10.44298 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.006240 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.683172 B = 4486.350814 C = 5919.396832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.272 3.728 10 C -0.302 4.302 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.369 3.631 14 N -0.645 5.645 15 C 0.530 3.470 16 O -0.392 6.392 17 C 0.041 3.959 18 C -0.068 4.068 19 C -0.125 4.125 20 C 0.043 3.957 21 N -0.246 5.246 22 N -0.219 5.219 23 N -0.475 5.475 24 H 0.272 0.728 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.411 0.589 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 0.318 -0.647 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.282 5.282 2 C -0.169 4.169 3 Si 0.722 3.278 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.456 4.456 8 H 0.101 0.899 9 C 0.147 3.853 10 C -0.325 4.325 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.131 3.869 14 N -0.292 5.292 15 C 0.308 3.692 16 O -0.253 6.253 17 C -0.106 4.106 18 C -0.097 4.097 19 C -0.154 4.154 20 C -0.120 4.120 21 N -0.089 5.089 22 N -0.066 5.066 23 N -0.195 5.195 24 H 0.084 0.916 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.246 0.754 29 H 0.181 0.819 30 H 0.172 0.828 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.664 0.471 -0.592 11.688 hybrid contribution 0.343 1.002 -0.063 1.061 sum -11.321 1.473 -0.655 11.435 Atomic orbital electron populations 1.70302 1.05897 1.27431 1.24537 1.26164 0.95112 1.00627 0.95016 0.86553 0.80191 0.81324 0.79709 1.19148 1.20421 1.19148 1.19548 0.94084 0.89343 1.42619 0.89917 1.18366 0.87030 0.92022 0.87928 1.21642 0.98627 0.93487 1.18716 1.20580 0.93100 0.96629 0.95714 1.20524 0.94827 0.95009 1.27167 1.18566 0.82857 0.91164 0.94331 1.43134 1.05247 1.09203 1.71576 1.17904 0.84208 0.85850 0.81230 1.91266 1.62972 1.30961 1.40122 1.23480 0.97713 0.91566 0.97812 1.22507 0.94682 1.00062 0.92484 1.22417 0.94827 1.00231 0.97922 1.24410 1.02573 0.89956 0.95098 1.73087 1.00450 1.26430 1.08962 1.73247 1.00826 1.25350 1.07205 1.68660 1.07227 1.23213 1.20353 0.91645 0.88436 0.88420 0.88728 0.75363 0.81854 0.82805 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.90 8.98 55.55 0.50 -17.41 16 2 C 0.06 1.54 5.50 -17.34 -0.10 1.44 16 3 Si 0.90 18.90 29.56 -169.99 -5.02 13.87 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.43 -11.57 9.14 -37.74 -0.34 -11.91 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.27 7.59 6.55 -85.00 -0.56 7.04 16 10 C -0.30 -7.56 9.83 -38.66 -0.38 -7.94 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.35 -7.99 9.95 -38.88 -0.39 -8.38 16 13 C 0.37 9.16 7.43 -155.05 -1.15 8.01 16 14 N -0.64 -13.59 5.37 -12.19 -0.07 -13.65 16 15 C 0.53 11.09 7.77 -12.21 -0.09 11.00 16 16 O -0.39 -9.59 12.15 5.35 0.07 -9.52 16 17 C 0.04 0.69 6.83 -82.84 -0.57 0.12 16 18 C -0.07 -0.91 9.73 -38.81 -0.38 -1.28 16 19 C -0.12 -1.20 10.20 -39.24 -0.40 -1.60 16 20 C 0.04 0.43 11.31 -17.28 -0.20 0.24 16 21 N -0.25 -3.49 11.51 30.59 0.35 -3.14 16 22 N -0.22 -3.55 10.76 33.32 0.36 -3.19 16 23 N -0.48 -13.31 5.73 -10.27 -0.06 -13.37 16 24 H 0.27 6.81 8.29 -40.82 -0.34 6.47 16 25 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 26 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.41 7.40 8.06 -40.82 -0.33 7.07 16 29 H 0.16 2.10 7.72 -52.49 -0.41 1.70 16 30 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 281.98 15.07 4.25 4.25 Total: -1.00 -32.59 281.98 -6.97 -39.56 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -2.39 Total: 7.09 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -4.95 Total: -4.49 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 1.09 Total: -50.77 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.59 -6.97 -39.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598038477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.443 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds