Wall clock time and date at job start Mon Mar 30 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86796 * 119.99892 * 2 1 4 4 H 1.48497 * 109.47289 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47488 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47008 * 119.99742 * 3 2 1 7 7 C 1.40022 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00232 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.40612 * 119.78892 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.13488 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.66806 * 359.97438 * 11 10 9 13 13 C 1.39658 * 119.49584 * 0.02562 * 12 11 10 14 14 N 1.39173 * 119.57516 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00110 * 185.31330 * 14 13 12 16 16 O 1.21515 * 119.99754 * 354.84972 * 15 14 13 17 17 C 1.48106 * 120.00545 * 174.84624 * 15 14 13 18 18 C 1.39739 * 120.18874 * 180.02562 * 17 15 14 19 19 C 1.38810 * 117.89811 * 180.02562 * 18 17 15 20 20 C 1.38582 * 118.06956 * 0.24781 * 19 18 17 21 21 N 1.32168 * 120.07046 * 359.48768 * 20 19 18 22 22 N 1.28353 * 122.30714 * 0.53638 * 21 20 19 23 23 N 1.31939 * 120.84822 * 0.25462 * 13 12 11 24 24 H 0.96993 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.43920 * 0.04138 * 10 9 7 26 26 H 1.07997 * 120.66871 * 179.97438 * 11 10 9 27 27 H 1.08003 * 120.25163 * 180.02562 * 12 11 10 28 28 H 0.97006 * 119.99978 * 5.30643 * 14 13 12 29 29 H 1.08000 * 121.04653 * 0.04575 * 18 17 15 30 30 H 1.08001 * 120.96802 * 179.97438 * 19 18 17 31 31 H 1.08001 * 119.96227 * 179.74926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3010 -2.4367 -0.0005 10 6 2.0086 -3.6518 -0.0005 11 6 1.3034 -4.8416 -0.0011 12 6 -0.0827 -4.7936 -0.0011 13 6 -0.7278 -3.5550 -0.0010 14 7 -2.1186 -3.5049 -0.0016 15 6 -2.7502 -2.3192 -0.1096 16 8 -2.1087 -1.2872 -0.1124 17 6 -4.2260 -2.2740 -0.2252 18 6 -4.8848 -1.0468 -0.3379 19 6 -6.2689 -1.0598 -0.4429 20 6 -6.9127 -2.2868 -0.4243 21 7 -6.2106 -3.4016 -0.3193 22 7 -4.9307 -3.3996 -0.2217 23 7 -0.0357 -2.4317 -0.0061 24 1 -0.4850 0.8400 -0.0004 25 1 3.0886 -3.6560 0.0001 26 1 1.8217 -5.7891 -0.0015 27 1 -0.6588 -5.7072 -0.0011 28 1 -2.6335 -4.3234 0.0758 29 1 -4.3343 -0.1176 -0.3436 30 1 -6.8281 -0.1402 -0.5320 31 1 -7.9891 -2.3323 -0.4998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598038477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:41 Heat of formation + Delta-G solvation = 65.727727 kcal Electronic energy + Delta-G solvation = -19538.505886 eV Core-core repulsion = 16399.850467 eV Total energy + Delta-G solvation = -3138.655419 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16235 -40.81875 -39.23694 -36.07250 -34.97563 -34.12340 -33.68065 -32.24381 -30.91845 -27.64168 -26.49022 -25.54038 -23.89032 -23.12595 -21.53256 -19.88295 -18.90005 -18.41589 -17.74061 -17.45345 -16.53382 -16.45271 -16.28494 -15.79153 -15.48161 -15.33424 -14.88837 -14.58889 -14.13837 -13.99124 -13.73990 -12.87613 -12.74615 -12.58515 -12.50281 -12.32550 -11.79790 -11.59263 -11.29023 -11.09813 -11.02712 -10.89049 -10.82043 -9.92964 -9.20527 -8.89045 -8.07565 -6.43193 -0.53350 -0.24324 0.89725 1.22907 1.41280 1.52594 1.54297 1.92960 2.03024 2.27309 2.67726 2.86456 2.99675 3.45238 3.64157 3.79576 3.96735 4.02494 4.17500 4.35104 4.68227 4.78229 4.84005 4.93652 4.94889 5.01860 5.18552 5.26902 5.65591 5.77631 5.90587 6.11438 6.30516 6.60831 6.77889 7.04434 7.36519 7.53079 8.27634 8.55992 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.006240 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.683172 B = 4486.350814 C = 5919.396832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.323 4.323 11 C -0.033 4.033 12 C -0.345 4.345 13 C 0.346 3.654 14 N -0.640 5.640 15 C 0.525 3.475 16 O -0.435 6.435 17 C 0.020 3.980 18 C -0.082 4.082 19 C -0.095 4.095 20 C 0.057 3.943 21 N -0.273 5.273 22 N -0.239 5.239 23 N -0.507 5.507 24 H 0.273 0.727 25 H 0.108 0.892 26 H 0.139 0.861 27 H 0.128 0.872 28 H 0.423 0.577 29 H 0.161 0.839 30 H 0.206 0.794 31 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 0.569 -0.852 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.213 4.213 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.346 4.346 11 C -0.057 4.057 12 C -0.370 4.370 13 C 0.108 3.892 14 N -0.288 5.288 15 C 0.306 3.694 16 O -0.300 6.300 17 C -0.127 4.127 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.105 4.105 21 N -0.115 5.115 22 N -0.086 5.086 23 N -0.227 5.227 24 H 0.084 0.916 25 H 0.127 0.873 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.261 0.739 29 H 0.178 0.822 30 H 0.223 0.777 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.786 0.665 -0.796 13.825 hybrid contribution 0.776 0.790 -0.011 1.107 sum -13.010 1.455 -0.806 13.116 Atomic orbital electron populations 1.70485 1.07427 1.28294 1.25267 1.27039 0.96033 1.04047 0.94198 0.85344 0.78663 0.76329 0.79815 1.18566 1.19576 1.18557 1.19903 0.94570 0.90380 1.44593 0.89396 1.18889 0.87739 0.93542 0.88753 1.21843 0.99376 0.93679 1.19727 1.21038 0.93228 0.97570 0.93839 1.20970 0.95399 0.95573 1.25098 1.19067 0.84395 0.91478 0.94225 1.43161 1.04098 1.10222 1.71356 1.18525 0.86169 0.85035 0.79705 1.91243 1.64693 1.32084 1.41934 1.22880 0.95174 0.93463 1.01211 1.22644 0.96647 0.98642 0.93193 1.22965 0.92909 1.02161 0.94291 1.25246 1.04617 0.88858 0.91803 1.73017 0.99533 1.28664 1.10291 1.73172 1.02077 1.25310 1.08052 1.68634 1.07588 1.25017 1.21484 0.91629 0.87343 0.84294 0.85372 0.73921 0.82176 0.77678 0.75910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -39.34 8.98 21.84 0.20 -39.15 16 2 C 0.01 0.65 5.50 85.29 0.47 1.12 16 3 Si 0.98 39.92 29.56 68.60 2.03 41.94 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.46 -26.31 9.14 23.46 0.21 -26.09 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.24 13.76 6.55 40.21 0.26 14.02 16 10 C -0.32 -16.50 9.83 22.87 0.22 -16.27 16 11 C -0.03 -1.46 10.15 22.40 0.23 -1.23 16 12 C -0.35 -15.58 9.95 22.72 0.23 -15.36 16 13 C 0.35 17.68 7.43 133.27 0.99 18.67 16 14 N -0.64 -27.88 5.37 -310.78 -1.67 -29.54 16 15 C 0.52 22.99 7.77 86.86 0.68 23.66 16 16 O -0.44 -22.54 12.15 -3.76 -0.05 -22.58 16 17 C 0.02 0.66 6.83 41.98 0.29 0.95 16 18 C -0.08 -2.12 9.73 22.77 0.22 -1.89 16 19 C -0.09 -1.44 10.20 22.49 0.23 -1.21 16 20 C 0.06 0.92 11.31 84.72 0.96 1.88 16 21 N -0.27 -7.15 11.51 -57.15 -0.66 -7.81 16 22 N -0.24 -7.66 10.76 -48.50 -0.52 -8.18 16 23 N -0.51 -29.69 5.73 -186.41 -1.07 -30.76 16 24 H 0.27 14.32 8.29 -92.71 -0.77 13.55 16 25 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 26 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 28 H 0.42 15.56 8.06 -92.70 -0.75 14.81 16 29 H 0.16 4.16 7.72 -2.91 -0.02 4.14 16 30 H 0.21 1.03 8.06 -2.91 -0.02 1.00 16 31 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -76.42 281.98 3.69 -72.73 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.44 Total: 25.10 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 4.99 Total: -1.76 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -3.72 Total: -115.44 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -76.42 3.69 -72.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598038477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.460 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds