Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47199 * 239.99884 * 3 2 1 5 5 H 1.48499 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47143 * 120.00352 * 3 2 1 7 7 C 1.38946 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99830 * 201.12217 * 7 2 1 9 9 N 1.37098 * 120.00260 * 21.11310 * 7 2 1 10 10 C 1.46499 * 119.99588 * 16.26421 * 9 7 2 11 11 C 1.50702 * 109.46800 * 264.14101 * 10 9 7 12 12 O 1.20820 * 119.99977 * 0.02562 * 11 10 9 13 13 O 1.34237 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.34778 * 120.00197 * 196.25468 * 9 7 2 15 15 O 1.21288 * 119.99766 * 0.02562 * 14 9 7 16 16 C 1.50699 * 119.99905 * 179.72765 * 14 9 7 17 17 C 1.53001 * 109.47029 * 180.28175 * 16 14 9 18 18 H 1.09007 * 110.21175 * 304.52438 * 17 16 14 19 19 C 1.54477 * 110.24376 * 182.50415 * 17 16 14 20 20 C 1.54625 * 101.76544 * 266.41107 * 19 17 16 21 21 C 1.51285 * 104.19618 * 335.20453 * 20 19 17 22 22 O 1.21278 * 124.94367 * 196.23134 * 21 20 19 23 23 N 1.34425 * 110.11299 * 16.24832 * 21 20 19 24 24 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47350 * 24.14322 * 10 9 7 26 26 H 1.09003 * 109.47133 * 144.14786 * 10 9 7 27 27 H 0.96696 * 117.00122 * 180.02562 * 13 11 10 28 28 H 1.09002 * 109.47343 * 300.27869 * 16 14 9 29 29 H 1.09001 * 109.47123 * 60.27855 * 16 14 9 30 30 H 1.09000 * 110.97363 * 24.53293 * 19 17 16 31 31 H 1.09002 * 110.96958 * 148.29589 * 19 17 16 32 32 H 1.08999 * 110.49143 * 216.53041 * 20 19 17 33 33 H 1.09001 * 110.59929 * 93.93646 * 20 19 17 34 34 H 0.97000 * 124.34558 * 180.38498 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0345 -1.2348 0.3365 9 7 1.3925 -2.3506 -0.4287 10 6 0.1546 -2.2699 -1.2080 11 6 -1.0289 -2.4274 -0.2885 12 8 -0.8561 -2.5898 0.8962 13 8 -2.2752 -2.3872 -0.7857 14 6 1.9255 -3.5526 -0.1329 15 8 2.9502 -3.6194 0.5126 16 6 1.2446 -4.8139 -0.5983 17 6 2.0454 -6.0295 -0.1270 18 1 3.0774 -5.9568 -0.4704 19 6 1.3971 -7.3313 -0.6479 20 6 0.4829 -7.7238 0.5358 21 6 1.1294 -7.0693 1.7368 22 8 0.8936 -7.3515 2.8925 23 7 2.0030 -6.1293 1.3366 24 1 -0.4850 0.8400 -0.0004 25 1 0.1014 -1.3019 -1.7063 26 1 0.1428 -3.0641 -1.9546 27 1 -3.0022 -2.4925 -0.1570 28 1 0.2381 -4.8583 -0.1822 29 1 1.1881 -4.8158 -1.6869 30 1 0.8112 -7.1425 -1.5474 31 1 2.1512 -8.0972 -0.8290 32 1 0.4603 -8.8067 0.6576 33 1 -0.5250 -7.3364 0.3867 34 1 2.5364 -5.5864 1.9379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = -181.599365 kcal Electronic energy + Delta-G solvation = -21696.052531 eV Core-core repulsion = 18207.070534 eV Total energy + Delta-G solvation = -3488.981998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61874 -40.94989 -39.81552 -37.68909 -36.90230 -36.31079 -33.81145 -32.13255 -31.57094 -29.45217 -27.44295 -25.77862 -22.85428 -22.21885 -21.46097 -20.56570 -19.00995 -18.66885 -18.49704 -17.86102 -17.42818 -16.92678 -16.38972 -16.30745 -16.16221 -15.81648 -15.33005 -14.67259 -14.66464 -14.06291 -13.76751 -13.66959 -13.48865 -13.40053 -13.32604 -12.84226 -12.66865 -12.36924 -12.20963 -12.11730 -12.04159 -11.76630 -11.50964 -10.95386 -10.92316 -10.40666 -10.08855 -9.85043 -8.43854 -5.94745 1.37145 1.41926 1.51838 1.60100 1.71094 1.90626 2.26381 2.52386 2.56207 2.95614 3.11465 3.48238 3.63196 3.88124 4.01921 4.21407 4.27130 4.48367 4.55030 4.65478 4.79758 4.85277 4.96742 4.99045 5.14901 5.24063 5.45546 5.86031 5.96799 6.01783 6.19937 6.39363 7.12096 7.24334 7.33142 7.47616 7.95445 8.62241 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.006402 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.301057 B = 4372.652146 C = 4891.201547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.002 4.002 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.286 1.286 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.448 5.448 10 C 0.142 3.858 11 C 0.495 3.505 12 O -0.554 6.554 13 O -0.518 6.518 14 C 0.450 3.550 15 O -0.619 6.619 16 C -0.141 4.141 17 C 0.143 3.857 18 H 0.096 0.904 19 C -0.108 4.108 20 C -0.147 4.147 21 C 0.497 3.503 22 O -0.605 6.605 23 N -0.719 5.719 24 H 0.273 0.727 25 H 0.118 0.882 26 H 0.132 0.868 27 H 0.412 0.588 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -9.958 -11.491 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.203 4.203 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.167 5.167 10 C 0.017 3.983 11 C 0.337 3.663 12 O -0.444 6.444 13 O -0.330 6.330 14 C 0.241 3.759 15 O -0.505 6.505 16 C -0.182 4.182 17 C 0.037 3.963 18 H 0.114 0.886 19 C -0.146 4.146 20 C -0.186 4.186 21 C 0.285 3.715 22 O -0.487 6.487 23 N -0.370 5.370 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.996 -10.035 -10.659 14.943 hybrid contribution 0.048 1.724 1.633 2.375 sum -2.948 -8.312 -9.026 12.619 Atomic orbital electron populations 1.69869 1.06721 1.28618 1.48175 1.25903 0.96105 1.02287 0.95992 0.85068 0.77897 0.76893 0.78868 1.18410 1.20039 1.21219 1.19572 0.97193 0.85483 1.44561 0.90372 1.43628 1.20624 1.05329 1.47127 1.20897 0.79789 1.06245 0.91398 1.23996 0.84355 0.69478 0.88453 1.90634 1.86470 1.47367 1.19880 1.84450 1.16771 1.85457 1.46339 1.21089 0.86780 0.85586 0.82458 1.90467 1.28193 1.87345 1.44494 1.22195 0.99674 0.91524 1.04768 1.21638 1.01082 0.94879 0.78670 0.88627 1.22771 0.99302 0.94274 0.98207 1.22404 1.01054 1.03415 0.91774 1.21992 0.78855 0.79853 0.90760 1.90670 1.66407 1.68077 1.23584 1.46646 1.42501 1.38005 1.09855 0.91708 0.86442 0.85096 0.72860 0.90337 0.84105 0.85214 0.87316 0.86025 0.86783 0.76307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.81 9.25 21.66 0.20 -45.61 16 2 C 0.00 -0.08 4.89 84.93 0.42 0.33 16 3 Si 0.99 41.54 29.60 68.60 2.03 43.58 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.34 -18.55 9.35 84.04 0.79 -17.77 16 8 H 0.08 4.60 7.37 -2.91 -0.02 4.58 16 9 N -0.45 -21.32 2.18 -639.60 -1.39 -22.71 16 10 C 0.14 5.54 4.97 85.63 0.43 5.96 16 11 C 0.49 20.32 5.85 71.24 0.42 20.73 16 12 O -0.55 -28.44 16.81 21.98 0.37 -28.07 16 13 O -0.52 -16.37 13.42 -51.49 -0.69 -17.07 16 14 C 0.45 19.98 7.30 87.66 0.64 20.62 16 15 O -0.62 -32.01 14.59 -3.05 -0.04 -32.05 16 16 C -0.14 -4.13 3.92 29.85 0.12 -4.02 16 17 C 0.14 3.68 3.02 45.45 0.14 3.81 16 18 H 0.10 2.48 7.99 -2.38 -0.02 2.46 16 19 C -0.11 -1.56 6.70 31.65 0.21 -1.35 16 20 C -0.15 -2.92 6.86 30.59 0.21 -2.71 16 21 C 0.50 16.86 8.43 87.90 0.74 17.60 16 22 O -0.60 -26.47 18.03 -3.02 -0.05 -26.52 16 23 N -0.72 -24.70 5.46 -439.44 -2.40 -27.10 16 24 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 25 H 0.12 4.88 6.34 -2.39 -0.02 4.86 16 26 H 0.13 3.55 6.69 -2.39 -0.02 3.54 16 27 H 0.41 9.88 9.10 -74.06 -0.67 9.21 16 28 H 0.08 2.43 7.50 -2.39 -0.02 2.41 16 29 H 0.14 2.73 7.42 -2.39 -0.02 2.71 16 30 H 0.13 1.00 7.89 -2.39 -0.02 0.98 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.40 16.17 8.19 -92.71 -0.76 15.41 16 Total: -1.00 -82.22 293.17 1.85 -80.37 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.27 Total: 31.97 kcal Atomic # 6 Polarization: 39.11 SS G_CDS: 4.10 Total: 43.21 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -3.59 Total: -95.41 kcal Atomic # 8 Polarization: -103.29 SS G_CDS: -0.42 Total: -103.71 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.58 kcal Total: -82.22 1.85 -80.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.230 kcal (2) G-P(sol) polarization free energy of solvation -82.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds