Wall clock time and date at job start Mon Mar 30 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47181 * 300.00359 * 3 2 1 6 6 H 1.48506 * 109.46717 * 60.00444 * 3 2 1 7 7 C 1.38955 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99638 * 191.36009 * 7 2 1 9 9 N 1.37095 * 119.99742 * 11.35768 * 7 2 1 10 10 C 1.46504 * 119.99929 * 234.36848 * 9 7 2 11 11 C 1.53002 * 109.47332 * 274.55555 * 10 9 7 12 12 C 1.50693 * 109.47398 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99889 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00222 * 180.02562 * 12 11 10 15 15 C 1.34783 * 120.00197 * 54.37879 * 9 7 2 16 16 O 1.21288 * 119.99689 * 184.17927 * 15 9 7 17 17 C 1.50698 * 119.99586 * 4.16856 * 15 9 7 18 18 H 1.08998 * 110.54431 * 308.55330 * 17 15 9 19 19 C 1.54634 * 110.48196 * 185.94367 * 17 15 9 20 20 C 1.54662 * 101.68087 * 216.30887 * 19 17 15 21 21 N 1.46757 * 105.38175 * 25.77300 * 20 19 17 22 22 C 1.34413 * 111.30246 * 342.58203 * 21 20 19 23 23 O 1.21280 * 124.94427 * 180.65637 * 22 21 20 24 24 H 0.96997 * 119.99571 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47078 * 34.55589 * 10 9 7 26 26 H 1.09000 * 109.47226 * 154.55868 * 10 9 7 27 27 H 1.09008 * 109.47035 * 300.00386 * 11 10 9 28 28 H 1.09006 * 109.46968 * 59.99676 * 11 10 9 29 29 H 0.96701 * 116.99915 * 180.02562 * 14 12 11 30 30 H 1.08996 * 110.96817 * 334.64271 * 19 17 15 31 31 H 1.08999 * 110.96671 * 98.36814 * 19 17 15 32 32 H 1.08997 * 110.40217 * 266.73505 * 20 19 17 33 33 H 1.09008 * 110.17439 * 144.68500 * 20 19 17 34 34 H 0.97006 * 124.34584 * 162.85814 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0730 -1.2127 0.1837 9 7 1.3434 -2.3789 -0.2349 10 6 1.4458 -3.4822 0.7235 11 6 2.6953 -4.3102 0.4166 12 6 2.8003 -5.4454 1.4020 13 8 1.9620 -5.5784 2.2619 14 8 3.8256 -6.3082 1.3251 15 6 0.5952 -2.5196 -1.3471 16 8 -0.0538 -3.5300 -1.5175 17 6 0.5648 -1.4214 -2.3786 18 1 0.3374 -0.4635 -1.9109 19 6 -0.4694 -1.7439 -3.4820 20 6 0.2343 -1.1892 -4.7426 21 7 1.6692 -1.2302 -4.4372 22 6 1.8839 -1.3509 -3.1158 23 8 2.9763 -1.3969 -2.5910 24 1 -0.4849 0.8401 0.0004 25 1 1.5155 -3.0802 1.7342 26 1 0.5621 -4.1154 0.6444 27 1 2.6256 -4.7121 -0.5942 28 1 3.5791 -3.6770 0.4956 29 1 3.8500 -7.0204 1.9788 30 1 -0.6319 -2.8187 -3.5622 31 1 -1.4089 -1.2218 -3.3006 32 1 -0.0816 -0.1637 -4.9339 33 1 0.0139 -1.8195 -5.6043 34 1 2.3723 -1.1733 -5.1031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:10 Heat of formation + Delta-G solvation = -152.966766 kcal Electronic energy + Delta-G solvation = -21778.555731 eV Core-core repulsion = 18290.815336 eV Total energy + Delta-G solvation = -3487.740395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.07843 -39.80036 -37.88075 -35.91053 -35.63667 -34.69495 -32.71657 -30.53018 -30.11558 -27.20712 -25.21074 -23.94659 -21.56273 -20.84914 -20.12316 -19.12809 -17.81937 -16.96428 -16.63715 -16.33107 -15.73007 -15.59539 -15.20081 -14.71693 -14.23007 -13.70505 -13.60712 -13.09205 -13.00465 -12.84010 -12.56579 -12.28592 -11.88672 -11.56268 -11.38394 -11.24677 -11.15508 -11.04469 -10.96264 -10.42404 -10.35808 -10.23383 -10.12773 -9.17422 -8.67804 -8.60280 -8.40182 -7.37823 -6.42421 -4.23169 2.56006 3.11894 3.22113 3.26047 3.32760 3.41629 3.77220 4.03190 4.20838 4.81148 4.90178 5.08204 5.29522 5.47144 5.50335 5.66522 5.69612 5.85904 5.91381 6.19477 6.28276 6.43661 6.57303 6.66696 6.72833 6.89534 6.98904 7.37933 7.46886 7.53169 7.91709 8.20423 8.62424 8.89586 8.97533 9.48229 9.91543 10.63730 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.008017 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.616821 B = 3491.929388 C = 4291.961246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.035 3.965 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.085 0.915 9 N -0.446 5.446 10 C 0.127 3.873 11 C -0.124 4.124 12 C 0.484 3.516 13 O -0.518 6.518 14 O -0.522 6.522 15 C 0.539 3.461 16 O -0.604 6.604 17 C -0.141 4.141 18 H 0.161 0.839 19 C -0.123 4.123 20 C 0.105 3.895 21 N -0.747 5.747 22 C 0.531 3.469 23 O -0.504 6.504 24 H 0.271 0.729 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.402 0.598 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -2.239 -5.813 6.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.167 4.167 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.426 4.426 8 H 0.103 0.897 9 N -0.165 5.165 10 C 0.003 3.997 11 C -0.163 4.163 12 C 0.327 3.673 13 O -0.407 6.407 14 O -0.334 6.334 15 C 0.328 3.672 16 O -0.489 6.489 17 C -0.165 4.165 18 H 0.177 0.823 19 C -0.161 4.161 20 C -0.020 4.020 21 N -0.405 5.405 22 C 0.317 3.683 23 O -0.377 6.377 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.260 0.740 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.440 -2.350 -5.505 6.464 hybrid contribution 0.618 0.633 0.103 0.891 sum 3.058 -1.717 -5.403 6.441 Atomic orbital electron populations 1.69936 1.05852 1.27807 1.47527 1.25575 0.95358 1.00091 0.95708 0.86060 0.80654 0.81626 0.77821 1.18775 1.20551 1.20660 1.19331 0.92455 0.82242 1.48541 0.89736 1.43141 1.44638 1.12340 1.16380 1.21119 0.94805 0.89722 0.94066 1.21837 1.03749 0.93016 0.97696 1.23778 0.77376 0.82004 0.84135 1.90694 1.40659 1.73072 1.36236 1.84595 1.49187 1.41147 1.58453 1.19520 0.80153 0.85561 0.81988 1.90493 1.47414 1.31919 1.79066 1.22379 0.93278 1.05384 0.95411 0.82304 1.22606 0.98097 1.03320 0.92064 1.22044 0.80652 1.00607 0.98668 1.46255 1.08312 1.77288 1.08608 1.20633 0.90943 0.74631 0.82103 1.90719 1.27580 1.48471 1.70909 0.91920 0.90582 0.90611 0.88123 0.87391 0.74013 0.88985 0.89836 0.91824 0.91050 0.76133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.50 11.08 55.50 0.61 -21.89 16 2 C 0.04 0.89 3.80 -17.46 -0.07 0.82 16 3 Si 0.91 20.03 29.57 -169.99 -5.03 15.00 16 4 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -7.58 6.82 -14.93 -0.10 -7.68 16 8 H 0.09 2.17 7.86 -52.49 -0.41 1.76 16 9 N -0.45 -11.20 2.42 -114.81 -0.28 -11.48 16 10 C 0.13 2.87 4.75 -4.04 -0.02 2.85 16 11 C -0.12 -2.34 6.11 -27.89 -0.17 -2.51 16 12 C 0.48 8.34 8.33 36.00 0.30 8.64 16 13 O -0.52 -10.27 16.74 -18.75 -0.31 -10.58 16 14 O -0.52 -7.08 13.42 -39.24 -0.53 -7.60 16 15 C 0.54 13.63 6.25 -10.98 -0.07 13.56 16 16 O -0.60 -16.04 14.96 5.55 0.08 -15.96 16 17 C -0.14 -3.13 2.31 -91.78 -0.21 -3.34 16 18 H 0.16 3.82 4.47 -51.93 -0.23 3.59 16 19 C -0.12 -2.17 6.54 -25.00 -0.16 -2.33 16 20 C 0.11 1.44 7.79 -3.03 -0.02 1.42 16 21 N -0.75 -12.05 6.24 -59.11 -0.37 -12.42 16 22 C 0.53 11.32 7.73 -10.86 -0.08 11.24 16 23 O -0.50 -12.17 15.97 5.56 0.09 -12.08 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.08 1.72 8.03 -51.93 -0.42 1.30 16 26 H 0.08 1.82 7.20 -51.93 -0.37 1.44 16 27 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 28 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 29 H 0.40 3.46 9.10 45.56 0.41 3.88 16 30 H 0.09 1.72 6.93 -51.93 -0.36 1.36 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.40 5.36 8.96 -40.82 -0.37 4.99 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -32.58 293.72 -4.90 -37.49 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -2.99 Total: 12.43 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: -0.61 Total: 22.66 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.03 Total: -45.79 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.67 Total: -46.23 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.58 -4.90 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.479 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds