Wall clock time and date at job start Mon Mar 30 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48495 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47181 * 300.00359 * 3 2 1 6 6 H 1.48506 * 109.46717 * 60.00444 * 3 2 1 7 7 C 1.38955 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99638 * 191.36009 * 7 2 1 9 9 N 1.37095 * 119.99742 * 11.35768 * 7 2 1 10 10 C 1.46504 * 119.99929 * 234.36848 * 9 7 2 11 11 C 1.53002 * 109.47332 * 274.55555 * 10 9 7 12 12 C 1.50693 * 109.47398 * 180.02562 * 11 10 9 13 13 O 1.20825 * 119.99889 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00222 * 180.02562 * 12 11 10 15 15 C 1.34783 * 120.00197 * 54.37879 * 9 7 2 16 16 O 1.21288 * 119.99689 * 184.17927 * 15 9 7 17 17 C 1.50698 * 119.99586 * 4.16856 * 15 9 7 18 18 H 1.08998 * 110.54431 * 308.55330 * 17 15 9 19 19 C 1.54634 * 110.48196 * 185.94367 * 17 15 9 20 20 C 1.54662 * 101.68087 * 216.30887 * 19 17 15 21 21 N 1.46757 * 105.38175 * 25.77300 * 20 19 17 22 22 C 1.34413 * 111.30246 * 342.58203 * 21 20 19 23 23 O 1.21280 * 124.94427 * 180.65637 * 22 21 20 24 24 H 0.96997 * 119.99571 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47078 * 34.55589 * 10 9 7 26 26 H 1.09000 * 109.47226 * 154.55868 * 10 9 7 27 27 H 1.09008 * 109.47035 * 300.00386 * 11 10 9 28 28 H 1.09006 * 109.46968 * 59.99676 * 11 10 9 29 29 H 0.96701 * 116.99915 * 180.02562 * 14 12 11 30 30 H 1.08996 * 110.96817 * 334.64271 * 19 17 15 31 31 H 1.08999 * 110.96671 * 98.36814 * 19 17 15 32 32 H 1.08997 * 110.40217 * 266.73505 * 20 19 17 33 33 H 1.09008 * 110.17439 * 144.68500 * 20 19 17 34 34 H 0.97006 * 124.34584 * 162.85814 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0730 -1.2127 0.1837 9 7 1.3434 -2.3789 -0.2349 10 6 1.4458 -3.4822 0.7235 11 6 2.6953 -4.3102 0.4166 12 6 2.8003 -5.4454 1.4020 13 8 1.9620 -5.5784 2.2619 14 8 3.8256 -6.3082 1.3251 15 6 0.5952 -2.5196 -1.3471 16 8 -0.0538 -3.5300 -1.5175 17 6 0.5648 -1.4214 -2.3786 18 1 0.3374 -0.4635 -1.9109 19 6 -0.4694 -1.7439 -3.4820 20 6 0.2343 -1.1892 -4.7426 21 7 1.6692 -1.2302 -4.4372 22 6 1.8839 -1.3509 -3.1158 23 8 2.9763 -1.3969 -2.5910 24 1 -0.4849 0.8401 0.0004 25 1 1.5155 -3.0802 1.7342 26 1 0.5621 -4.1154 0.6444 27 1 2.6256 -4.7121 -0.5942 28 1 3.5791 -3.6770 0.4956 29 1 3.8500 -7.0204 1.9788 30 1 -0.6319 -2.8187 -3.5622 31 1 -1.4089 -1.2218 -3.3006 32 1 -0.0816 -0.1637 -4.9339 33 1 0.0139 -1.8195 -5.6043 34 1 2.3723 -1.1733 -5.1031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:09 Heat of formation + Delta-G solvation = -178.755966 kcal Electronic energy + Delta-G solvation = -21779.674035 eV Core-core repulsion = 18290.815336 eV Total energy + Delta-G solvation = -3488.858699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69408 -41.22997 -39.64703 -37.36384 -37.12111 -36.54993 -34.51998 -32.22237 -31.73185 -28.65524 -27.08956 -25.63011 -23.02005 -22.31852 -21.73016 -20.94498 -19.20042 -18.68692 -18.18971 -17.85466 -17.24193 -17.18590 -16.94998 -16.44169 -15.98433 -15.32439 -15.22799 -14.63651 -14.51680 -14.37127 -14.26619 -13.86059 -13.43151 -13.33942 -13.14949 -12.90475 -12.74771 -12.58697 -12.53343 -12.14657 -11.99628 -11.87098 -11.69101 -10.93251 -10.45224 -10.35642 -9.91537 -9.31188 -8.34232 -6.20703 1.15409 1.37758 1.43573 1.56251 1.68686 1.95851 2.07633 2.36259 2.62082 2.98224 3.12187 3.72701 3.76087 3.92109 4.00424 4.21596 4.32260 4.43930 4.59273 4.65161 4.78274 4.87972 4.98733 5.06477 5.16078 5.36107 5.50380 5.56055 5.97456 6.02979 6.17563 6.66514 6.95579 6.98421 7.46991 7.54667 7.99076 8.73149 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.008017 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.616821 B = 3491.929388 C = 4291.961246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.309 4.309 8 H 0.077 0.923 9 N -0.455 5.455 10 C 0.126 3.874 11 C -0.114 4.114 12 C 0.500 3.500 13 O -0.547 6.547 14 O -0.507 6.507 15 C 0.522 3.478 16 O -0.629 6.629 17 C -0.149 4.149 18 H 0.144 0.856 19 C -0.121 4.121 20 C 0.111 3.889 21 N -0.727 5.727 22 C 0.524 3.476 23 O -0.543 6.543 24 H 0.276 0.724 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.428 0.572 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -1.647 -7.355 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.438 4.438 8 H 0.095 0.905 9 N -0.173 5.173 10 C 0.002 3.998 11 C -0.153 4.153 12 C 0.343 3.657 13 O -0.438 6.438 14 O -0.321 6.321 15 C 0.312 3.688 16 O -0.517 6.517 17 C -0.173 4.173 18 H 0.160 0.840 19 C -0.159 4.159 20 C -0.012 4.012 21 N -0.384 5.384 22 C 0.309 3.691 23 O -0.419 6.419 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.290 0.710 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.006 -1.776 -7.083 7.897 hybrid contribution 0.435 0.371 0.592 0.823 sum 3.441 -1.406 -6.490 7.479 Atomic orbital electron populations 1.70006 1.06897 1.28757 1.47776 1.26133 0.95901 1.02298 0.94987 0.85273 0.79174 0.78424 0.78201 1.19292 1.19652 1.19982 1.19354 0.92234 0.82843 1.49330 0.90513 1.43355 1.44441 1.12826 1.16702 1.21073 0.95797 0.89423 0.93472 1.21541 1.02041 0.93598 0.98092 1.23191 0.77562 0.81906 0.83017 1.90696 1.41960 1.73873 1.37287 1.84508 1.47049 1.41305 1.59214 1.20157 0.79789 0.86219 0.82596 1.90453 1.48412 1.33109 1.79706 1.22357 0.95698 1.03299 0.95994 0.83967 1.22631 0.97971 1.02877 0.92455 1.22276 0.78257 1.02970 0.97734 1.46106 1.10160 1.75153 1.07025 1.20583 0.89955 0.74862 0.83710 1.90686 1.28521 1.50585 1.72125 0.91453 0.91315 0.92696 0.88419 0.86643 0.70965 0.90391 0.88708 0.88950 0.86993 0.74111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.54 11.08 21.67 0.24 -46.30 16 2 C 0.01 0.39 3.80 84.93 0.32 0.71 16 3 Si 0.97 40.78 29.57 68.60 2.03 42.81 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.31 -16.08 6.82 84.04 0.57 -15.50 16 8 H 0.08 4.04 7.86 -2.91 -0.02 4.01 16 9 N -0.46 -23.50 2.42 -635.53 -1.54 -25.04 16 10 C 0.13 5.92 4.75 86.38 0.41 6.33 16 11 C -0.11 -4.36 6.11 29.85 0.18 -4.18 16 12 C 0.50 16.92 8.33 71.23 0.59 17.52 16 13 O -0.55 -21.68 16.74 21.97 0.37 -21.31 16 14 O -0.51 -12.68 13.42 -51.34 -0.69 -13.37 16 15 C 0.52 27.04 6.25 87.66 0.55 27.59 16 16 O -0.63 -34.42 14.96 -3.06 -0.05 -34.47 16 17 C -0.15 -6.63 2.31 -11.55 -0.03 -6.65 16 18 H 0.14 6.86 4.47 -2.39 -0.01 6.85 16 19 C -0.12 -4.10 6.54 31.72 0.21 -3.89 16 20 C 0.11 2.63 7.79 86.90 0.68 3.30 16 21 N -0.73 -21.47 6.24 -459.51 -2.87 -24.34 16 22 C 0.52 21.90 7.73 87.90 0.68 22.58 16 23 O -0.54 -26.24 15.97 -3.03 -0.05 -26.29 16 24 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 25 H 0.07 3.24 8.03 -2.39 -0.02 3.22 16 26 H 0.05 2.76 7.20 -2.39 -0.02 2.74 16 27 H 0.10 3.81 8.14 -2.38 -0.02 3.79 16 28 H 0.12 4.24 8.14 -2.38 -0.02 4.22 16 29 H 0.43 6.21 9.10 -74.06 -0.67 5.54 16 30 H 0.08 2.86 6.93 -2.39 -0.02 2.85 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.42 9.83 8.96 -92.70 -0.83 8.99 16 Total: -1.00 -72.11 293.72 1.28 -70.83 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.34 Total: 29.67 kcal Atomic # 6 Polarization: 43.63 SS G_CDS: 4.17 Total: 47.80 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -4.16 Total: -95.67 kcal Atomic # 8 Polarization: -95.02 SS G_CDS: -0.42 Total: -95.44 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -72.11 1.28 -70.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.925 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds