Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48494 * 109.47499 * 269.99918 * 3 2 1 5 5 H 1.48505 * 109.46803 * 30.00270 * 3 2 1 6 6 H 1.48504 * 109.46865 * 149.99943 * 3 2 1 7 7 C 1.38945 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00246 * 158.65950 * 7 2 1 9 9 N 1.37096 * 120.00322 * 338.66001 * 7 2 1 10 10 C 1.46502 * 119.99890 * 322.34787 * 9 7 2 11 11 C 1.53003 * 109.46883 * 269.99536 * 10 9 7 12 12 C 1.50697 * 109.47176 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99986 * 359.97438 * 12 11 10 14 14 O 1.34225 * 119.99927 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00241 * 142.33837 * 9 7 2 16 16 O 1.21294 * 119.99856 * 185.67157 * 15 9 7 17 17 C 1.50699 * 119.99998 * 5.67447 * 15 9 7 18 18 H 1.09000 * 110.43575 * 36.91166 * 17 15 9 19 19 C 1.54630 * 110.59945 * 159.52569 * 17 15 9 20 20 C 1.54473 * 101.76581 * 93.93380 * 19 17 15 21 21 N 1.46761 * 105.53280 * 25.20996 * 20 19 17 22 22 C 1.34420 * 111.30493 * 343.36796 * 21 20 19 23 23 O 1.21277 * 124.94868 * 180.27918 * 22 21 20 24 24 H 0.96997 * 120.00176 * 5.05220 * 1 2 3 25 25 H 1.08998 * 109.47047 * 29.99133 * 10 9 7 26 26 H 1.09000 * 109.47328 * 149.99670 * 10 9 7 27 27 H 1.09002 * 109.46931 * 300.00161 * 11 10 9 28 28 H 1.09000 * 109.47029 * 59.99951 * 11 10 9 29 29 H 0.96702 * 116.99998 * 180.02562 * 14 12 11 30 30 H 1.09001 * 110.96823 * 212.05658 * 19 17 15 31 31 H 1.09005 * 110.96955 * 335.81682 * 19 17 15 32 32 H 1.09003 * 110.24513 * 144.41545 * 20 19 17 33 33 H 1.08999 * 110.25291 * 266.32938 * 20 19 17 34 34 H 0.97008 * 124.34815 * 163.20701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0334 -1.2352 -0.3409 9 7 1.3940 -2.3501 0.4310 10 6 0.4695 -2.3028 1.5665 11 6 1.2447 -2.5347 2.8651 12 6 0.2939 -2.4854 4.0333 13 8 -0.8828 -2.2849 3.8465 14 8 0.7546 -2.6633 5.2814 15 6 1.6398 -3.5210 -0.1895 16 8 1.0200 -4.5154 0.1241 17 6 2.6847 -3.5949 -1.2729 18 1 3.5299 -2.9506 -1.0310 19 6 3.1565 -5.0534 -1.4752 20 6 2.2349 -5.5267 -2.6210 21 7 1.8485 -4.3088 -3.3430 22 6 2.0900 -3.2087 -2.6093 23 8 1.8598 -2.0722 -2.9647 24 1 -0.4850 0.8367 -0.0740 25 1 -0.0136 -1.3264 1.6013 26 1 -0.2872 -3.0789 1.4516 27 1 1.7279 -3.5111 2.8304 28 1 2.0014 -1.7587 2.9801 29 1 0.1068 -2.6234 5.9983 30 1 4.2033 -5.0864 -1.7775 31 1 2.9935 -5.6447 -0.5740 32 1 2.7735 -6.2055 -3.2823 33 1 1.3508 -6.0184 -2.2154 34 1 1.4697 -4.2988 -4.2360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = -153.168810 kcal Electronic energy + Delta-G solvation = -21536.781637 eV Core-core repulsion = 18049.032481 eV Total energy + Delta-G solvation = -3487.749156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17084 -39.76772 -37.93811 -35.91465 -35.67272 -34.77806 -31.94186 -31.25808 -30.20242 -27.30995 -25.17038 -24.05701 -21.71084 -20.91880 -20.03995 -18.99715 -17.78111 -17.20934 -16.85682 -16.28816 -15.85262 -15.52791 -14.90678 -14.63761 -14.40518 -13.97306 -13.60615 -13.08245 -12.99466 -12.78872 -12.47057 -12.39972 -12.14564 -11.74423 -11.21523 -11.15948 -11.08990 -11.01870 -10.92885 -10.53265 -10.36460 -10.14849 -10.01813 -9.28872 -9.06435 -8.67057 -8.49181 -7.55584 -6.32670 -4.02083 2.65446 3.10626 3.22231 3.27445 3.28586 3.37255 3.72066 3.96891 4.16907 4.66445 4.89885 4.96116 5.16668 5.31509 5.56191 5.61676 5.74247 5.78287 5.94123 6.09231 6.15731 6.23253 6.31257 6.43850 6.79519 6.85058 7.30531 7.32604 7.49066 7.53566 7.87230 8.28681 8.33666 8.89041 9.08581 9.38663 9.81659 10.70856 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.008481 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.617412 B = 3300.771195 C = 4721.307829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.055 3.945 3 Si 0.912 3.088 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.345 4.345 8 H 0.093 0.907 9 N -0.424 5.424 10 C 0.124 3.876 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.484 3.516 16 O -0.598 6.598 17 C -0.128 4.128 18 H 0.119 0.881 19 C -0.118 4.118 20 C 0.109 3.891 21 N -0.741 5.741 22 C 0.535 3.465 23 O -0.498 6.498 24 H 0.271 0.729 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.401 0.599 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -7.070 1.717 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.152 4.152 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.110 0.890 9 N -0.140 5.140 10 C 0.000 4.000 11 C -0.162 4.162 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.271 3.729 16 O -0.484 6.484 17 C -0.152 4.152 18 H 0.136 0.864 19 C -0.156 4.156 20 C -0.016 4.016 21 N -0.399 5.399 22 C 0.319 3.681 23 O -0.370 6.370 24 H 0.082 0.918 25 H 0.134 0.866 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.259 0.741 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.803 -6.698 1.509 8.990 hybrid contribution -0.197 0.912 0.008 0.933 sum 5.606 -5.785 1.518 8.198 Atomic orbital electron populations 1.69853 1.06339 1.28108 1.44459 1.25313 0.94990 0.99896 0.95034 0.86164 0.79611 0.81610 0.78761 1.19985 1.20843 1.19233 1.19275 0.97051 0.84461 1.46462 0.88969 1.43358 1.39485 1.06356 1.24844 1.21209 0.91250 1.05923 0.81613 1.21840 0.98481 1.05028 0.90892 1.23759 0.88787 0.71510 0.83460 1.90711 1.18973 1.44763 1.85616 1.84585 1.46482 1.84811 1.17761 1.19633 0.85512 0.84680 0.83043 1.90532 1.52901 1.36797 1.68172 1.21820 1.00441 0.98286 0.94674 0.86364 1.22505 0.98450 0.95083 0.99605 1.21946 0.98985 0.87017 0.93653 1.46175 1.66820 1.07621 1.19307 1.20314 0.77618 0.84412 0.85766 1.90797 1.51381 1.20374 1.74474 0.91841 0.86560 0.91429 0.88565 0.87528 0.74111 0.90439 0.88543 0.91200 0.90880 0.75832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.60 11.46 55.50 0.64 -22.96 16 2 C 0.06 1.43 4.96 -17.47 -0.09 1.35 16 3 Si 0.91 20.16 29.61 -169.99 -5.03 15.12 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.35 -8.73 8.01 -14.94 -0.12 -8.85 16 8 H 0.09 2.24 6.52 -52.48 -0.34 1.90 16 9 N -0.42 -10.45 2.52 -114.81 -0.29 -10.74 16 10 C 0.12 2.96 4.34 -4.04 -0.02 2.94 16 11 C -0.12 -2.36 6.13 -27.88 -0.17 -2.53 16 12 C 0.48 8.72 8.33 36.00 0.30 9.02 16 13 O -0.51 -10.92 16.74 -18.75 -0.31 -11.23 16 14 O -0.52 -7.31 13.42 -39.25 -0.53 -7.83 16 15 C 0.48 11.28 6.81 -10.99 -0.07 11.20 16 16 O -0.60 -14.68 15.35 5.55 0.09 -14.59 16 17 C -0.13 -2.48 2.53 -91.78 -0.23 -2.71 16 18 H 0.12 2.21 6.68 -51.93 -0.35 1.86 16 19 C -0.12 -1.71 6.39 -25.10 -0.16 -1.87 16 20 C 0.11 1.47 7.71 -3.13 -0.02 1.45 16 21 N -0.74 -11.99 6.24 -59.21 -0.37 -12.36 16 22 C 0.53 11.16 7.65 -10.86 -0.08 11.07 16 23 O -0.50 -12.58 17.43 5.56 0.10 -12.48 16 24 H 0.27 7.15 8.32 -40.82 -0.34 6.81 16 25 H 0.12 3.07 5.48 -51.93 -0.28 2.78 16 26 H 0.07 1.73 7.31 -51.93 -0.38 1.35 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 29 H 0.40 3.67 9.10 45.56 0.41 4.09 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 5.60 8.96 -40.82 -0.37 5.23 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -34.28 297.41 -4.84 -39.12 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -2.94 Total: 12.41 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: -0.67 Total: 21.07 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.02 Total: -46.06 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.66 Total: -46.14 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.28 -4.84 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.050 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds