Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48494 * 109.47499 * 269.99918 * 3 2 1 5 5 H 1.48505 * 109.46803 * 30.00270 * 3 2 1 6 6 H 1.48504 * 109.46865 * 149.99943 * 3 2 1 7 7 C 1.38945 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00246 * 158.65950 * 7 2 1 9 9 N 1.37096 * 120.00322 * 338.66001 * 7 2 1 10 10 C 1.46502 * 119.99890 * 322.34787 * 9 7 2 11 11 C 1.53003 * 109.46883 * 269.99536 * 10 9 7 12 12 C 1.50697 * 109.47176 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99986 * 359.97438 * 12 11 10 14 14 O 1.34225 * 119.99927 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00241 * 142.33837 * 9 7 2 16 16 O 1.21294 * 119.99856 * 185.67157 * 15 9 7 17 17 C 1.50699 * 119.99998 * 5.67447 * 15 9 7 18 18 H 1.09000 * 110.43575 * 36.91166 * 17 15 9 19 19 C 1.54630 * 110.59945 * 159.52569 * 17 15 9 20 20 C 1.54473 * 101.76581 * 93.93380 * 19 17 15 21 21 N 1.46761 * 105.53280 * 25.20996 * 20 19 17 22 22 C 1.34420 * 111.30493 * 343.36796 * 21 20 19 23 23 O 1.21277 * 124.94868 * 180.27918 * 22 21 20 24 24 H 0.96997 * 120.00176 * 5.05220 * 1 2 3 25 25 H 1.08998 * 109.47047 * 29.99133 * 10 9 7 26 26 H 1.09000 * 109.47328 * 149.99670 * 10 9 7 27 27 H 1.09002 * 109.46931 * 300.00161 * 11 10 9 28 28 H 1.09000 * 109.47029 * 59.99951 * 11 10 9 29 29 H 0.96702 * 116.99998 * 180.02562 * 14 12 11 30 30 H 1.09001 * 110.96823 * 212.05658 * 19 17 15 31 31 H 1.09005 * 110.96955 * 335.81682 * 19 17 15 32 32 H 1.09003 * 110.24513 * 144.41545 * 20 19 17 33 33 H 1.08999 * 110.25291 * 266.32938 * 20 19 17 34 34 H 0.97008 * 124.34815 * 163.20701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0334 -1.2352 -0.3409 9 7 1.3940 -2.3501 0.4310 10 6 0.4695 -2.3028 1.5665 11 6 1.2447 -2.5347 2.8651 12 6 0.2939 -2.4854 4.0333 13 8 -0.8828 -2.2849 3.8465 14 8 0.7546 -2.6633 5.2814 15 6 1.6398 -3.5210 -0.1895 16 8 1.0200 -4.5154 0.1241 17 6 2.6847 -3.5949 -1.2729 18 1 3.5299 -2.9506 -1.0310 19 6 3.1565 -5.0534 -1.4752 20 6 2.2349 -5.5267 -2.6210 21 7 1.8485 -4.3088 -3.3430 22 6 2.0900 -3.2087 -2.6093 23 8 1.8598 -2.0722 -2.9647 24 1 -0.4850 0.8367 -0.0740 25 1 -0.0136 -1.3264 1.6013 26 1 -0.2872 -3.0789 1.4516 27 1 1.7279 -3.5111 2.8304 28 1 2.0014 -1.7587 2.9801 29 1 0.1068 -2.6234 5.9983 30 1 4.2033 -5.0864 -1.7775 31 1 2.9935 -5.6447 -0.5740 32 1 2.7735 -6.2055 -3.2823 33 1 1.3508 -6.0184 -2.2154 34 1 1.4697 -4.2988 -4.2360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071136.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = -181.001015 kcal Electronic energy + Delta-G solvation = -21537.988532 eV Core-core repulsion = 18049.032481 eV Total energy + Delta-G solvation = -3488.956051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75728 -41.21552 -39.68987 -37.49066 -37.09781 -36.57316 -33.80756 -32.90054 -31.73675 -28.69268 -27.07745 -25.74194 -23.05718 -22.35982 -21.63449 -20.80817 -19.24586 -18.83524 -18.36317 -17.90860 -17.55068 -17.01570 -16.56468 -16.22671 -16.17952 -15.57953 -15.21315 -14.54465 -14.52308 -14.35920 -14.20662 -13.95171 -13.54317 -13.41805 -13.01240 -12.78540 -12.69190 -12.55423 -12.26216 -12.13009 -12.04639 -11.83474 -11.65463 -11.10516 -10.81592 -10.44851 -9.94137 -9.49389 -8.27963 -6.01652 1.20359 1.36962 1.46068 1.53582 1.57564 1.88943 2.11859 2.38019 2.57794 2.99689 3.09024 3.61346 3.71892 3.99954 4.06231 4.15710 4.33731 4.44369 4.52660 4.70483 4.74611 4.81506 4.97272 5.09896 5.26758 5.36278 5.55511 5.61278 5.95471 5.99488 6.11101 6.37126 7.01337 7.13923 7.38173 7.50760 7.92095 8.76165 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.008481 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.617412 B = 3300.771195 C = 4721.307829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.343 4.343 8 H 0.102 0.898 9 N -0.440 5.440 10 C 0.128 3.872 11 C -0.114 4.114 12 C 0.495 3.505 13 O -0.552 6.552 14 O -0.506 6.506 15 C 0.476 3.524 16 O -0.616 6.616 17 C -0.131 4.131 18 H 0.124 0.876 19 C -0.108 4.108 20 C 0.105 3.895 21 N -0.725 5.725 22 C 0.523 3.477 23 O -0.555 6.555 24 H 0.268 0.732 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.427 0.573 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -8.311 2.027 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.119 0.881 9 N -0.157 5.157 10 C 0.004 3.996 11 C -0.152 4.152 12 C 0.338 3.662 13 O -0.443 6.443 14 O -0.319 6.319 15 C 0.265 3.735 16 O -0.503 6.503 17 C -0.156 4.156 18 H 0.141 0.859 19 C -0.145 4.145 20 C -0.018 4.018 21 N -0.382 5.382 22 C 0.308 3.692 23 O -0.432 6.432 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.056 0.944 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.288 0.712 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.223 -8.013 1.849 11.629 hybrid contribution -0.971 1.148 -0.074 1.506 sum 7.251 -6.865 1.775 10.142 Atomic orbital electron populations 1.69998 1.08040 1.28525 1.46719 1.26175 0.95554 1.03148 0.94854 0.85221 0.79275 0.77489 0.78197 1.20963 1.20952 1.16713 1.19542 0.97300 0.84615 1.45544 0.88053 1.43603 1.39648 1.06844 1.25592 1.20957 0.91419 1.03179 0.84029 1.21584 0.98152 1.06186 0.89291 1.23385 0.87676 0.70650 0.84471 1.90713 1.20456 1.46735 1.86396 1.84497 1.46852 1.83702 1.16857 1.20324 0.85873 0.83926 0.83398 1.90508 1.53769 1.37182 1.68828 1.21884 0.99157 1.02110 0.92419 0.85859 1.22615 1.00841 0.91091 0.99985 1.22227 0.99043 0.86279 0.94241 1.46170 1.65067 1.07396 1.19526 1.20658 0.77468 0.84515 0.86599 1.90760 1.53972 1.22734 1.75765 0.92264 0.89333 0.94416 0.87185 0.86206 0.71176 0.86301 0.88707 0.85935 0.92043 0.74495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.54 11.46 21.66 0.25 -51.29 16 2 C 0.01 0.30 4.96 84.93 0.42 0.72 16 3 Si 0.97 41.67 29.61 68.60 2.03 43.70 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.24 -9.39 7.11 99.48 0.71 -8.69 16 7 C -0.34 -17.47 8.01 84.04 0.67 -16.80 16 8 H 0.10 4.88 6.52 -2.91 -0.02 4.86 16 9 N -0.44 -22.02 2.52 -635.53 -1.60 -23.63 16 10 C 0.13 6.32 4.34 86.38 0.37 6.70 16 11 C -0.11 -4.30 6.13 29.85 0.18 -4.11 16 12 C 0.49 17.50 8.33 71.24 0.59 18.09 16 13 O -0.55 -23.80 16.74 21.97 0.37 -23.43 16 14 O -0.51 -12.81 13.42 -51.37 -0.69 -13.50 16 15 C 0.48 22.22 6.81 87.66 0.60 22.81 16 16 O -0.62 -30.33 15.35 -3.07 -0.05 -30.38 16 17 C -0.13 -4.93 2.53 -11.55 -0.03 -4.96 16 18 H 0.12 4.44 6.68 -2.39 -0.02 4.42 16 19 C -0.11 -2.74 6.39 31.65 0.20 -2.54 16 20 C 0.11 2.49 7.71 86.83 0.67 3.16 16 21 N -0.73 -22.04 6.24 -459.82 -2.87 -24.91 16 22 C 0.52 21.52 7.65 87.90 0.67 22.19 16 23 O -0.56 -28.53 17.43 -3.02 -0.05 -28.59 16 24 H 0.27 14.76 8.32 -92.71 -0.77 13.99 16 25 H 0.09 4.89 5.48 -2.39 -0.01 4.88 16 26 H 0.04 2.02 7.31 -2.39 -0.02 2.00 16 27 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.12 4.21 8.14 -2.39 -0.02 4.20 16 29 H 0.43 6.59 9.10 -74.06 -0.67 5.91 16 30 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.51 7.36 -2.38 -0.02 2.49 16 32 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.42 10.74 8.96 -92.70 -0.83 9.91 16 Total: -1.00 -78.07 297.41 1.41 -76.66 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.34 Total: 30.10 kcal Atomic # 6 Polarization: 40.91 SS G_CDS: 4.36 Total: 45.26 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.22 Total: -99.83 kcal Atomic # 8 Polarization: -95.47 SS G_CDS: -0.42 Total: -95.89 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -78.07 1.41 -76.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071136.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.342 kcal (2) G-P(sol) polarization free energy of solvation -78.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds