Wall clock time and date at job start Mon Mar 30 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 13 13 O 1.20822 * 120.00115 * 119.99778 * 12 2 1 14 14 O 1.34234 * 119.99749 * 299.99625 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 C 1.50692 * 109.47295 * 180.02562 * 15 14 12 17 17 O 1.20768 * 120.00260 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00115 * 180.02562 * 16 15 14 19 19 C 1.50700 * 115.55186 * 34.33066 * 18 16 15 20 20 O 1.20821 * 119.99962 * 145.58346 * 19 18 16 21 21 O 1.34230 * 119.99760 * 325.58196 * 19 18 16 22 22 C 1.53004 * 117.49842 * 248.62219 * 18 16 15 23 23 C 1.53005 * 60.00119 * 252.51120 * 22 18 16 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47093 * 300.00565 * 15 14 12 29 29 H 1.09002 * 109.46827 * 59.99933 * 15 14 12 30 30 H 0.96695 * 116.99773 * 179.97438 * 21 19 18 31 31 H 1.08997 * 117.49931 * 359.97438 * 22 18 16 32 32 H 1.09000 * 117.50100 * 145.02104 * 22 18 16 33 33 H 1.09002 * 117.49947 * 252.51092 * 23 22 18 34 34 H 1.08991 * 117.49966 * 107.48883 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0324 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7082 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7621 -0.3299 4.8639 17 8 1.0651 0.6552 4.8163 18 6 2.1669 -0.9026 6.1977 19 6 3.5416 -1.5179 6.2507 20 8 4.2014 -1.4367 7.2595 21 8 4.0329 -2.1563 5.1770 22 6 1.0721 -1.5436 7.0530 23 6 1.6628 -0.1906 7.4547 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7093 1.1618 -3.4844 28 1 1.8626 -2.0133 3.5565 29 1 3.3164 -0.9862 3.5568 30 1 4.9191 -2.5344 5.2585 31 1 0.0589 -1.5507 6.6511 32 1 1.3459 -2.4107 7.6541 33 1 2.3252 -0.1675 8.3200 34 1 1.0383 0.6921 7.3168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:06 Heat of formation + Delta-G solvation = -185.567563 kcal Electronic energy + Delta-G solvation = -20562.156195 eV Core-core repulsion = 17040.709372 eV Total energy + Delta-G solvation = -3521.446823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24058 -39.85954 -39.16142 -37.01867 -36.05458 -35.61853 -33.89197 -30.76611 -29.48757 -25.98570 -25.19928 -23.30348 -23.07643 -22.21990 -19.87613 -19.83978 -18.34474 -17.48368 -16.83911 -16.43022 -16.08917 -15.93880 -15.58913 -15.35294 -14.83698 -14.56564 -14.27057 -13.88381 -13.27010 -12.86546 -12.54686 -12.15720 -12.05258 -11.82792 -11.72997 -11.50883 -11.15948 -11.05957 -10.97182 -10.80077 -10.68621 -10.36933 -10.16142 -10.07357 -9.88753 -9.15143 -9.04390 -8.45343 -6.10553 -4.16465 1.37746 1.80134 2.52273 2.90437 3.18146 3.25462 3.30371 3.35953 3.42166 3.91902 4.04989 4.25264 4.42104 4.62599 4.87547 5.07621 5.19323 5.22498 5.32968 5.40851 5.50816 5.59501 6.01363 6.09767 6.67800 6.87942 6.88200 7.12090 7.21258 7.43728 7.49614 7.74259 7.94133 8.13290 8.79027 8.92219 9.49025 10.96791 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.036339 B = 0.004056 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.346752 B = 6902.221439 C = 7458.737246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.514 6.514 14 O -0.352 6.352 15 C 0.022 3.978 16 C 0.396 3.604 17 O -0.413 6.413 18 C -0.207 4.207 19 C 0.524 3.476 20 O -0.506 6.506 21 O -0.502 6.502 22 C -0.117 4.117 23 C -0.114 4.114 24 H 0.025 0.975 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.418 0.582 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -4.268 18.160 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.401 6.401 14 O -0.270 6.270 15 C -0.053 4.053 16 C 0.268 3.732 17 O -0.282 6.282 18 C -0.209 4.209 19 C 0.366 3.634 20 O -0.394 6.394 21 O -0.315 6.315 22 C -0.154 4.154 23 C -0.151 4.151 24 H 0.044 0.956 25 H 0.115 0.885 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.278 0.722 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.762 -3.728 18.212 18.605 hybrid contribution 1.173 -0.963 -0.775 1.704 sum 1.934 -4.691 17.437 18.160 Atomic orbital electron populations 1.21741 0.95502 1.00057 1.01899 1.18789 0.94969 0.97053 0.85227 0.91673 1.21128 1.32024 1.13266 0.88714 0.90590 1.24941 0.94910 0.95001 0.99135 1.69883 1.36474 1.22718 1.23886 0.86368 0.79423 0.79200 0.81739 1.20526 1.21138 1.19676 1.25490 0.76553 0.83282 0.83602 1.90500 1.36316 1.26660 1.86588 1.86710 1.70277 1.55195 1.14858 1.23096 1.01541 0.96788 0.83890 1.23260 0.77890 0.83385 0.88686 1.90460 1.27969 1.21253 1.88565 1.21505 0.93338 1.10245 0.95857 1.21568 0.86579 0.74747 0.80507 1.90733 1.59267 1.56673 1.32715 1.84598 1.39199 1.66787 1.40903 1.23218 0.95824 0.98227 0.98114 1.23258 1.01449 0.96998 0.93393 0.95594 0.88528 0.94989 0.92663 0.87917 0.87201 0.72181 0.86259 0.86604 0.86104 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.90 37.16 0.33 -2.89 16 2 C 0.06 1.50 2.74 -92.92 -0.25 1.25 16 3 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 4 C -0.51 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.08 2.20 6.76 -52.48 -0.35 1.84 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 8 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.47 10.95 7.25 36.00 0.26 11.21 16 13 O -0.51 -12.73 15.21 -18.75 -0.29 -13.01 16 14 O -0.35 -7.23 9.66 -45.93 -0.44 -7.68 16 15 C 0.02 0.34 4.59 36.00 0.17 0.50 16 16 C 0.40 5.46 6.85 -29.04 -0.20 5.27 16 17 O -0.41 -6.85 16.40 -13.72 -0.22 -7.07 16 18 C -0.21 -2.14 2.53 -156.81 -0.40 -2.54 16 19 C 0.52 5.48 7.84 36.01 0.28 5.77 16 20 O -0.51 -6.24 17.02 -18.75 -0.32 -6.56 16 21 O -0.50 -4.45 10.32 -39.26 -0.41 -4.86 16 22 C -0.12 -0.86 9.94 -26.73 -0.27 -1.12 16 23 C -0.11 -0.96 9.56 -26.73 -0.26 -1.21 16 24 H 0.02 0.56 8.11 -51.93 -0.42 0.13 16 25 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.10 1.48 8.13 -51.93 -0.42 1.06 16 29 H 0.11 1.64 6.42 -51.93 -0.33 1.30 16 30 H 0.42 1.88 9.10 45.56 0.41 2.29 16 31 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.12 0.93 7.67 -51.93 -0.40 0.53 16 34 H 0.12 1.04 7.67 -51.93 -0.40 0.64 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -33.53 305.47 -5.24 -38.77 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.05 Total: 0.52 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.72 Total: 3.18 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.63 Total: -24.21 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.68 Total: -39.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.53 -5.24 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.801 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds