Wall clock time and date at job start Mon Mar 30 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 13 13 O 1.20822 * 120.00115 * 119.99778 * 12 2 1 14 14 O 1.34234 * 119.99749 * 299.99625 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 C 1.50692 * 109.47295 * 180.02562 * 15 14 12 17 17 O 1.20768 * 120.00260 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00115 * 180.02562 * 16 15 14 19 19 C 1.50700 * 115.55186 * 34.33066 * 18 16 15 20 20 O 1.20821 * 119.99962 * 145.58346 * 19 18 16 21 21 O 1.34230 * 119.99760 * 325.58196 * 19 18 16 22 22 C 1.53004 * 117.49842 * 248.62219 * 18 16 15 23 23 C 1.53005 * 60.00119 * 252.51120 * 22 18 16 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47093 * 300.00565 * 15 14 12 29 29 H 1.09002 * 109.46827 * 59.99933 * 15 14 12 30 30 H 0.96695 * 116.99773 * 179.97438 * 21 19 18 31 31 H 1.08997 * 117.49931 * 359.97438 * 22 18 16 32 32 H 1.09000 * 117.50100 * 145.02104 * 22 18 16 33 33 H 1.09002 * 117.49947 * 252.51092 * 23 22 18 34 34 H 1.08991 * 117.49966 * 107.48883 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0324 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7082 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7621 -0.3299 4.8639 17 8 1.0651 0.6552 4.8163 18 6 2.1669 -0.9026 6.1977 19 6 3.5416 -1.5179 6.2507 20 8 4.2014 -1.4367 7.2595 21 8 4.0329 -2.1563 5.1770 22 6 1.0721 -1.5436 7.0530 23 6 1.6628 -0.1906 7.4547 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7093 1.1618 -3.4844 28 1 1.8626 -2.0133 3.5565 29 1 3.3164 -0.9862 3.5568 30 1 4.9191 -2.5344 5.2585 31 1 0.0589 -1.5507 6.6511 32 1 1.3459 -2.4107 7.6541 33 1 2.3252 -0.1675 8.3200 34 1 1.0383 0.6921 7.3168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:06 Heat of formation + Delta-G solvation = -206.537317 kcal Electronic energy + Delta-G solvation = -20563.065511 eV Core-core repulsion = 17040.709372 eV Total energy + Delta-G solvation = -3522.356139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16432 -41.35908 -40.39973 -37.88224 -37.31135 -36.84337 -35.92577 -32.74990 -30.77965 -27.29729 -26.94574 -24.96433 -23.72139 -23.37285 -21.64423 -20.71322 -19.28929 -18.71900 -18.40880 -17.94919 -17.76601 -17.37086 -16.87495 -16.45780 -16.18814 -15.78455 -15.57997 -15.09164 -14.74049 -14.38201 -14.11170 -13.58818 -13.37473 -12.97395 -12.78854 -12.74318 -12.63093 -12.59725 -12.50879 -12.30923 -12.04846 -11.90944 -11.79923 -11.68666 -11.23361 -11.10686 -10.84443 -10.52890 -8.19249 -6.33236 0.40702 0.92123 1.38627 1.43300 1.44835 1.51184 1.60284 1.82677 2.42195 2.45724 2.70380 3.10983 3.25496 3.59407 3.77728 3.94958 4.09970 4.21378 4.31767 4.53800 4.57741 4.67806 4.80169 4.89124 4.97739 5.00908 5.30821 5.42021 5.43000 5.68008 5.87032 6.07425 6.11615 6.73515 6.82902 6.98387 7.35818 8.87401 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.036339 B = 0.004056 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.346752 B = 6902.221439 C = 7458.737246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.049 0.951 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.966 3.034 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.475 3.525 13 O -0.531 6.531 14 O -0.358 6.358 15 C 0.011 3.989 16 C 0.408 3.592 17 O -0.446 6.446 18 C -0.224 4.224 19 C 0.532 3.468 20 O -0.527 6.527 21 O -0.506 6.506 22 C -0.094 4.094 23 C -0.109 4.109 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.268 0.732 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.436 0.564 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 -5.267 19.043 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.791 3.209 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.420 6.420 14 O -0.275 6.275 15 C -0.063 4.063 16 C 0.282 3.718 17 O -0.318 6.318 18 C -0.226 4.226 19 C 0.375 3.625 20 O -0.416 6.416 21 O -0.321 6.321 22 C -0.131 4.131 23 C -0.146 4.146 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.300 0.700 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.733 -4.733 19.110 19.701 hybrid contribution 1.202 -0.650 -0.973 1.677 sum 1.935 -5.383 18.137 19.018 Atomic orbital electron populations 1.21565 0.94445 1.00048 1.01823 1.18708 0.95926 0.96181 0.86204 0.93377 1.21256 1.32699 1.13351 0.90226 0.92099 1.25681 0.94873 0.95622 1.01706 1.69974 1.36726 1.23430 1.24776 0.85424 0.78789 0.78354 0.78316 1.19698 1.20128 1.19809 1.24855 0.76170 0.82704 0.84261 1.90478 1.37029 1.27311 1.87151 1.86632 1.70156 1.55669 1.15086 1.23568 1.02269 0.97479 0.82970 1.23321 0.76760 0.82491 0.89242 1.90459 1.29744 1.22590 1.89043 1.21415 0.94458 1.12413 0.94305 1.21487 0.86321 0.74368 0.80370 1.90730 1.59678 1.57723 1.33514 1.84548 1.40673 1.66512 1.40331 1.23470 0.95135 0.98373 0.96075 1.23365 1.01311 0.97696 0.92204 0.93767 0.90357 0.94847 0.92268 0.86385 0.86340 0.70039 0.85304 0.84375 0.85228 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.90 71.98 0.64 -5.19 16 2 C 0.05 2.54 2.74 -12.29 -0.03 2.51 16 3 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.54 -30.40 8.37 25.60 0.21 -30.19 16 5 H 0.06 3.57 6.76 -2.91 -0.02 3.55 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -50.86 11.32 21.45 0.24 -50.61 16 8 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.47 22.40 7.25 71.23 0.52 22.92 16 13 O -0.53 -26.31 15.21 21.98 0.33 -25.98 16 14 O -0.36 -14.59 9.66 -45.09 -0.44 -15.03 16 15 C 0.01 0.33 4.59 71.23 0.33 0.66 16 16 C 0.41 10.79 6.85 29.10 0.20 10.98 16 17 O -0.45 -14.54 16.40 17.37 0.28 -14.26 16 18 C -0.22 -4.20 2.53 -53.67 -0.14 -4.33 16 19 C 0.53 10.13 7.84 71.24 0.56 10.69 16 20 O -0.53 -12.05 17.02 21.98 0.37 -11.68 16 21 O -0.51 -8.06 10.32 -51.42 -0.53 -8.59 16 22 C -0.09 -1.10 9.94 30.60 0.30 -0.80 16 23 C -0.11 -1.59 9.56 30.60 0.29 -1.30 16 24 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 25 H 0.08 4.07 6.07 -2.39 -0.01 4.05 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 28 H 0.12 3.23 8.13 -2.39 -0.02 3.22 16 29 H 0.12 3.41 6.42 -2.39 -0.02 3.40 16 30 H 0.44 3.14 9.10 -74.06 -0.67 2.47 16 31 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 1.70 7.67 -2.39 -0.02 1.68 16 34 H 0.12 1.85 7.67 -2.39 -0.02 1.83 16 Total: -1.00 -71.21 305.47 6.10 -65.11 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.47 Total: 7.95 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 3.33 Total: 7.55 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.24 Total: -50.61 kcal Atomic # 8 Polarization: -75.56 SS G_CDS: 0.03 Total: -75.53 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.21 6.10 -65.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.432 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds