Wall clock time and date at job start Mon Mar 30 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27642 * 125.77228 * 2 1 4 4 O 1.41376 * 113.17328 * 180.34850 * 3 2 1 5 5 C 1.44253 * 107.50892 * 342.62865 * 4 3 2 6 6 H 1.08992 * 111.01069 * 267.01027 * 5 4 3 7 7 C 1.50694 * 111.01168 * 143.17259 * 5 4 3 8 8 O 1.21289 * 120.00180 * 356.46129 * 7 5 4 9 9 N 1.34780 * 119.99921 * 176.45302 * 7 5 4 10 10 C 1.37096 * 119.99772 * 0.02562 * 9 7 5 11 11 H 1.07997 * 120.00006 * 32.43693 * 10 9 7 12 12 C 1.38951 * 120.00113 * 212.15343 * 10 9 7 13 13 N 1.31412 * 119.99662 * 36.20603 * 12 10 9 14 14 Si 1.86803 * 120.00495 * 216.20733 * 12 10 9 15 15 H 1.48501 * 109.47005 * 90.00233 * 14 12 10 16 16 H 1.48498 * 109.46930 * 210.00077 * 14 12 10 17 17 H 1.48491 * 109.46955 * 330.00161 * 14 12 10 18 18 C 1.46499 * 120.00161 * 179.97438 * 9 7 5 19 19 C 1.52995 * 109.47266 * 268.12633 * 18 9 7 20 20 C 1.50705 * 109.47229 * 180.02562 * 19 18 9 21 21 O 1.20829 * 119.99745 * 359.97438 * 20 19 18 22 22 O 1.34224 * 119.99962 * 179.97438 * 20 19 18 23 23 C 1.51682 * 125.76668 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46892 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47400 * 120.01871 * 1 2 3 26 26 H 1.09005 * 109.47070 * 240.02598 * 1 2 3 27 27 H 0.97004 * 120.00140 * 6.40680 * 13 12 10 28 28 H 1.08997 * 109.46822 * 28.12754 * 18 9 7 29 29 H 1.09001 * 109.47217 * 148.12073 * 18 9 7 30 30 H 1.09004 * 109.47112 * 299.99484 * 19 18 9 31 31 H 1.08999 * 109.47787 * 60.00014 * 19 18 9 32 32 H 0.96710 * 116.99583 * 179.97438 * 22 20 19 33 33 H 1.08997 * 110.81117 * 77.00296 * 23 2 1 34 34 H 1.08998 * 110.80745 * 313.49734 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6328 0.7273 -0.0079 5 6 3.7720 -0.6502 0.3973 6 1 3.9333 -0.7269 1.4724 7 6 4.8832 -1.3273 -0.3627 8 8 5.4769 -0.7261 -1.2329 9 7 5.2176 -2.6009 -0.0752 10 6 4.5464 -3.2806 0.9082 11 1 3.5014 -3.0764 1.0888 12 6 5.2090 -4.2362 1.6686 13 7 6.4668 -4.0536 2.0026 14 14 4.3122 -5.7807 2.2161 15 1 4.4802 -6.8408 1.1898 16 1 4.8756 -6.2486 3.5079 17 1 2.8679 -5.4804 2.3858 18 6 6.2975 -3.2594 -0.8144 19 6 5.7136 -3.9980 -2.0204 20 6 6.8245 -4.6759 -2.7804 21 8 7.9662 -4.5779 -2.3970 22 8 6.5456 -5.3886 -3.8831 23 6 2.3935 -1.2308 -0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5141 -0.8898 26 1 -0.3633 -0.5135 0.8903 27 1 6.9054 -3.2126 1.7993 28 1 7.0118 -2.5110 -1.1576 29 1 6.8028 -3.9715 -0.1619 30 1 4.9994 -4.7465 -1.6771 31 1 5.2084 -3.2860 -2.6729 32 1 7.2913 -5.8048 -4.3370 33 1 2.4340 -1.6785 -0.9935 34 1 2.0508 -1.9552 0.7382 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604616232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:23 Heat of formation + Delta-G solvation = -104.425431 kcal Electronic energy + Delta-G solvation = -21224.570415 eV Core-core repulsion = 17738.934930 eV Total energy + Delta-G solvation = -3485.635485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19622 -39.87642 -38.28936 -35.95055 -35.30640 -33.50240 -32.14723 -31.42442 -29.75571 -28.26521 -25.23647 -24.79742 -22.88258 -20.77893 -19.64424 -19.42333 -18.02477 -17.56029 -16.74146 -16.07182 -15.81847 -15.61945 -15.24284 -14.86451 -14.23827 -13.97895 -13.76440 -13.34863 -13.08997 -12.87152 -12.80887 -12.58308 -12.24691 -11.97473 -11.80522 -11.54198 -11.29852 -11.17926 -11.05675 -10.57301 -10.42287 -10.40078 -10.29274 -10.06701 -9.40353 -9.13683 -8.55495 -8.08870 -6.92658 -4.25969 2.05617 2.51952 3.06119 3.15556 3.21174 3.28495 3.35417 3.63143 4.04312 4.29258 4.45040 4.70824 4.95985 5.02778 5.31119 5.37343 5.44095 5.47626 5.55221 5.58973 5.78062 5.92035 5.96100 6.04830 6.10138 6.29749 6.46708 6.65791 6.80238 7.32189 7.68638 7.76879 8.11173 8.16743 8.72313 9.17741 9.52777 10.28531 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.007161 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.572052 B = 3909.281859 C = 4902.280709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.073 3.927 3 N -0.301 5.301 4 O -0.178 6.178 5 C 0.050 3.950 6 H 0.107 0.893 7 C 0.470 3.530 8 O -0.582 6.582 9 N -0.436 5.436 10 C -0.463 4.463 11 H 0.091 0.909 12 C 0.027 3.973 13 N -0.837 5.837 14 Si 1.061 2.939 15 H -0.281 1.281 16 H -0.282 1.282 17 H -0.280 1.280 18 C 0.119 3.881 19 C -0.121 4.121 20 C 0.484 3.516 21 O -0.515 6.515 22 O -0.522 6.522 23 C -0.133 4.133 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.284 0.716 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 -2.851 -3.944 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 N -0.042 5.042 4 O -0.197 6.197 5 C -0.012 4.012 6 H 0.125 0.875 7 C 0.258 3.742 8 O -0.466 6.466 9 N -0.157 5.157 10 C -0.588 4.588 11 H 0.109 0.891 12 C -0.186 4.186 13 N -0.466 5.466 14 Si 0.886 3.114 15 H -0.207 1.207 16 H -0.207 1.207 17 H -0.205 1.205 18 C -0.005 4.005 19 C -0.159 4.159 20 C 0.326 3.674 21 O -0.403 6.403 22 O -0.334 6.334 23 C -0.172 4.172 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.261 0.739 33 H 0.116 0.884 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.870 -2.550 -3.313 9.806 hybrid contribution 0.389 0.068 -0.944 1.023 sum -8.481 -2.482 -4.257 9.809 Atomic orbital electron populations 1.20376 0.85668 1.04130 1.03856 1.26286 0.97936 0.92861 0.94947 1.77777 0.90126 1.23675 1.12626 1.91314 1.14148 1.26227 1.87989 1.23229 0.94744 0.82538 1.00667 0.87515 1.19821 0.86424 0.81888 0.86078 1.90599 1.55881 1.64618 1.35501 1.43414 1.32296 1.08560 1.31385 1.20275 0.96271 1.25511 1.16746 0.89126 1.26327 0.96410 1.02560 0.93350 1.70693 1.13682 1.28556 1.33693 0.83640 0.75401 0.75144 0.77215 1.20742 1.20749 1.20522 1.21172 0.90262 0.97480 0.91618 1.21718 0.96036 1.00722 0.97458 1.23670 0.90475 0.75313 0.77950 1.90713 1.23585 1.58961 1.66993 1.84574 1.44773 1.63505 1.40523 1.22971 0.91118 0.98071 1.05068 0.90302 0.89502 0.89419 0.90483 0.90755 0.88369 0.87168 0.88208 0.73869 0.88379 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.49 36.00 0.38 -0.40 16 2 C 0.07 1.10 7.45 -78.58 -0.59 0.51 16 3 N -0.30 -5.68 12.45 35.65 0.44 -5.24 16 4 O -0.18 -4.02 11.84 -30.17 -0.36 -4.38 16 5 C 0.05 1.04 3.32 -26.95 -0.09 0.95 16 6 H 0.11 2.22 7.93 -51.93 -0.41 1.81 16 7 C 0.47 11.22 6.98 -10.99 -0.08 11.14 16 8 O -0.58 -15.66 16.14 -13.26 -0.21 -15.87 16 9 N -0.44 -10.08 2.39 -114.82 -0.27 -10.35 16 10 C -0.46 -10.49 8.31 -14.93 -0.12 -10.61 16 11 H 0.09 1.92 5.33 -52.49 -0.28 1.64 16 12 C 0.03 0.63 4.60 -17.47 -0.08 0.55 16 13 N -0.84 -21.44 12.19 55.50 0.68 -20.77 16 14 Si 1.06 20.44 30.04 -169.99 -5.11 15.34 16 15 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 18 C 0.12 2.67 4.10 -4.05 -0.02 2.65 16 19 C -0.12 -2.24 6.13 -27.88 -0.17 -2.41 16 20 C 0.48 8.53 8.33 36.01 0.30 8.83 16 21 O -0.51 -10.63 16.74 -18.75 -0.31 -10.94 16 22 O -0.52 -7.11 13.42 -39.24 -0.53 -7.64 16 23 C -0.13 -2.17 5.65 -26.47 -0.15 -2.32 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.28 7.57 7.91 -40.82 -0.32 7.25 16 28 H 0.07 1.79 7.32 -51.93 -0.38 1.41 16 29 H 0.10 2.38 5.61 -51.93 -0.29 2.09 16 30 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.40 3.56 9.10 45.56 0.41 3.98 16 33 H 0.10 1.62 7.90 -51.93 -0.41 1.21 16 34 H 0.11 1.60 6.82 -51.93 -0.35 1.25 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -32.17 300.51 -4.70 -36.88 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -2.94 Total: 9.56 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -0.62 Total: 8.89 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.85 Total: -36.35 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.41 Total: -38.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.11 Total: 15.34 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.17 -4.70 -36.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604616232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.550 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds