Wall clock time and date at job start Mon Mar 30 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27642 * 125.77228 * 2 1 4 4 O 1.41376 * 113.17328 * 180.34850 * 3 2 1 5 5 C 1.44253 * 107.50892 * 342.62865 * 4 3 2 6 6 H 1.08992 * 111.01069 * 267.01027 * 5 4 3 7 7 C 1.50694 * 111.01168 * 143.17259 * 5 4 3 8 8 O 1.21289 * 120.00180 * 356.46129 * 7 5 4 9 9 N 1.34780 * 119.99921 * 176.45302 * 7 5 4 10 10 C 1.37096 * 119.99772 * 0.02562 * 9 7 5 11 11 H 1.07997 * 120.00006 * 32.43693 * 10 9 7 12 12 C 1.38951 * 120.00113 * 212.15343 * 10 9 7 13 13 N 1.31412 * 119.99662 * 36.20603 * 12 10 9 14 14 Si 1.86803 * 120.00495 * 216.20733 * 12 10 9 15 15 H 1.48501 * 109.47005 * 90.00233 * 14 12 10 16 16 H 1.48498 * 109.46930 * 210.00077 * 14 12 10 17 17 H 1.48491 * 109.46955 * 330.00161 * 14 12 10 18 18 C 1.46499 * 120.00161 * 179.97438 * 9 7 5 19 19 C 1.52995 * 109.47266 * 268.12633 * 18 9 7 20 20 C 1.50705 * 109.47229 * 180.02562 * 19 18 9 21 21 O 1.20829 * 119.99745 * 359.97438 * 20 19 18 22 22 O 1.34224 * 119.99962 * 179.97438 * 20 19 18 23 23 C 1.51682 * 125.76668 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46892 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47400 * 120.01871 * 1 2 3 26 26 H 1.09005 * 109.47070 * 240.02598 * 1 2 3 27 27 H 0.97004 * 120.00140 * 6.40680 * 13 12 10 28 28 H 1.08997 * 109.46822 * 28.12754 * 18 9 7 29 29 H 1.09001 * 109.47217 * 148.12073 * 18 9 7 30 30 H 1.09004 * 109.47112 * 299.99484 * 19 18 9 31 31 H 1.08999 * 109.47787 * 60.00014 * 19 18 9 32 32 H 0.96710 * 116.99583 * 179.97438 * 22 20 19 33 33 H 1.08997 * 110.81117 * 77.00296 * 23 2 1 34 34 H 1.08998 * 110.80745 * 313.49734 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0356 0.0000 4 8 3.6328 0.7273 -0.0079 5 6 3.7720 -0.6502 0.3973 6 1 3.9333 -0.7269 1.4724 7 6 4.8832 -1.3273 -0.3627 8 8 5.4769 -0.7261 -1.2329 9 7 5.2176 -2.6009 -0.0752 10 6 4.5464 -3.2806 0.9082 11 1 3.5014 -3.0764 1.0888 12 6 5.2090 -4.2362 1.6686 13 7 6.4668 -4.0536 2.0026 14 14 4.3122 -5.7807 2.2161 15 1 4.4802 -6.8408 1.1898 16 1 4.8756 -6.2486 3.5079 17 1 2.8679 -5.4804 2.3858 18 6 6.2975 -3.2594 -0.8144 19 6 5.7136 -3.9980 -2.0204 20 6 6.8245 -4.6759 -2.7804 21 8 7.9662 -4.5779 -2.3970 22 8 6.5456 -5.3886 -3.8831 23 6 2.3935 -1.2308 -0.0006 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5141 -0.8898 26 1 -0.3633 -0.5135 0.8903 27 1 6.9054 -3.2126 1.7993 28 1 7.0118 -2.5110 -1.1576 29 1 6.8028 -3.9715 -0.1619 30 1 4.9994 -4.7465 -1.6771 31 1 5.2084 -3.2860 -2.6729 32 1 7.2913 -5.8048 -4.3370 33 1 2.4340 -1.6785 -0.9935 34 1 2.0508 -1.9552 0.7382 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604616232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:23 Heat of formation + Delta-G solvation = -127.270063 kcal Electronic energy + Delta-G solvation = -21225.561033 eV Core-core repulsion = 17738.934930 eV Total energy + Delta-G solvation = -3486.626102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75580 -41.29156 -39.97441 -37.40218 -37.04721 -34.82537 -33.90911 -33.10388 -31.28530 -29.23802 -26.96253 -26.49264 -24.45353 -22.24343 -21.35859 -20.79823 -19.57497 -19.08278 -18.34357 -17.56890 -17.27911 -17.17720 -16.78173 -16.44161 -15.82525 -15.51510 -15.26047 -14.66125 -14.58394 -14.29098 -14.23434 -13.78017 -13.64156 -13.39425 -13.20733 -13.04481 -12.77809 -12.63200 -12.52463 -12.23465 -11.95519 -11.83040 -11.77004 -11.58539 -11.13158 -10.76735 -10.30700 -9.97141 -8.79924 -6.13190 0.84388 1.10004 1.41212 1.62752 1.71023 1.76078 1.87509 2.11713 2.47951 2.78896 2.97002 3.14353 3.50487 3.64520 3.79344 3.85552 3.95148 4.20388 4.33661 4.47597 4.56799 4.63096 4.70242 4.74321 4.81618 4.87977 4.93438 5.32905 5.46364 5.51297 5.91543 6.18163 6.35972 6.89720 6.91873 7.34674 7.68805 8.38624 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.007161 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.572052 B = 3909.281859 C = 4902.280709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.106 3.894 3 N -0.338 5.338 4 O -0.229 6.229 5 C 0.047 3.953 6 H 0.100 0.900 7 C 0.456 3.544 8 O -0.625 6.625 9 N -0.436 5.436 10 C -0.461 4.461 11 H 0.114 0.886 12 C -0.011 4.011 13 N -0.869 5.869 14 Si 1.110 2.890 15 H -0.273 1.273 16 H -0.296 1.296 17 H -0.244 1.244 18 C 0.122 3.878 19 C -0.112 4.112 20 C 0.495 3.505 21 O -0.552 6.552 22 O -0.504 6.504 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.262 0.738 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.429 0.571 33 H 0.102 0.898 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 -4.764 -4.279 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 N -0.084 5.084 4 O -0.243 6.243 5 C -0.015 4.015 6 H 0.117 0.883 7 C 0.245 3.755 8 O -0.512 6.512 9 N -0.155 5.155 10 C -0.586 4.586 11 H 0.131 0.869 12 C -0.219 4.219 13 N -0.499 5.499 14 Si 0.930 3.070 15 H -0.198 1.198 16 H -0.223 1.223 17 H -0.167 1.167 18 C -0.002 4.002 19 C -0.151 4.151 20 C 0.338 3.662 21 O -0.443 6.443 22 O -0.317 6.317 23 C -0.166 4.166 24 H 0.104 0.896 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.290 0.710 33 H 0.120 0.880 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.527 -4.486 -3.681 13.805 hybrid contribution 1.479 0.650 -0.886 1.842 sum -11.048 -3.836 -4.566 12.555 Atomic orbital electron populations 1.20731 0.80928 1.05632 1.06601 1.27188 1.00126 0.90994 0.90388 1.77838 0.88326 1.25004 1.17223 1.91278 1.17546 1.26792 1.88711 1.23139 0.96132 0.82742 0.99461 0.88262 1.20457 0.87142 0.81840 0.86029 1.90554 1.57583 1.65502 1.37568 1.43614 1.31892 1.08592 1.31440 1.20692 0.97006 1.24576 1.16307 0.86894 1.27781 0.96105 1.05103 0.92866 1.70840 1.15249 1.27652 1.36203 0.83036 0.76117 0.71702 0.76179 1.19832 1.22266 1.16727 1.21003 0.90003 0.96416 0.92826 1.21502 0.96415 1.01018 0.96121 1.23311 0.89304 0.75082 0.78484 1.90716 1.24853 1.60472 1.68269 1.84489 1.45873 1.62526 1.38830 1.23014 0.88652 0.98999 1.05960 0.89556 0.86662 0.86273 0.92780 0.93730 0.90307 0.85367 0.87611 0.70956 0.88002 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.49 71.24 0.75 -0.38 16 2 C 0.11 2.87 7.45 46.90 0.35 3.22 16 3 N -0.34 -12.54 12.45 -40.62 -0.51 -13.04 16 4 O -0.23 -10.67 11.84 -20.30 -0.24 -10.91 16 5 C 0.05 1.98 3.32 30.45 0.10 2.08 16 6 H 0.10 4.21 7.93 -2.39 -0.02 4.19 16 7 C 0.46 22.42 6.98 87.65 0.61 23.03 16 8 O -0.62 -35.29 16.14 14.92 0.24 -35.05 16 9 N -0.44 -20.49 2.39 -635.56 -1.52 -22.00 16 10 C -0.46 -20.43 8.31 84.04 0.70 -19.74 16 11 H 0.11 4.44 5.33 -2.91 -0.02 4.43 16 12 C -0.01 -0.52 4.60 84.93 0.39 -0.13 16 13 N -0.87 -45.62 12.19 21.66 0.26 -45.35 16 14 Si 1.11 39.08 30.04 68.60 2.06 41.14 16 15 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 16 H -0.30 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.24 -7.19 7.11 99.48 0.71 -6.49 16 18 C 0.12 5.66 4.10 86.38 0.35 6.02 16 19 C -0.11 -4.11 6.13 29.85 0.18 -3.93 16 20 C 0.49 17.05 8.33 71.24 0.59 17.64 16 21 O -0.55 -23.09 16.74 21.95 0.37 -22.72 16 22 O -0.50 -12.44 13.42 -51.36 -0.69 -13.13 16 23 C -0.13 -3.84 5.65 30.77 0.17 -3.67 16 24 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.26 14.74 7.91 -92.71 -0.73 14.00 16 28 H 0.04 2.29 7.32 -2.39 -0.02 2.28 16 29 H 0.08 3.99 5.61 -2.39 -0.01 3.97 16 30 H 0.13 4.23 8.14 -2.38 -0.02 4.22 16 31 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 32 H 0.43 6.33 9.10 -74.05 -0.67 5.66 16 33 H 0.10 3.09 7.90 -2.39 -0.02 3.07 16 34 H 0.14 3.41 6.82 -2.39 -0.02 3.40 16 Total: -1.00 -74.87 300.51 4.70 -70.17 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.52 Total: 26.76 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 4.20 Total: 24.13 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -1.76 Total: -80.40 kcal Atomic # 8 Polarization: -81.48 SS G_CDS: -0.32 Total: -81.80 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.06 Total: 41.14 kcal Total: -74.87 4.70 -70.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604616232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.096 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds