Wall clock time and date at job start Mon Mar 30 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00014 * 2 1 4 4 H 1.48506 * 109.47004 * 275.12642 * 3 2 1 5 5 H 1.48499 * 109.47234 * 35.12396 * 3 2 1 6 6 H 1.48495 * 109.47242 * 155.12621 * 3 2 1 7 7 C 1.37875 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 354.45822 * 7 2 1 9 9 C 1.50694 * 120.00121 * 174.45208 * 7 2 1 10 10 C 1.52998 * 113.00157 * 85.43134 * 9 7 2 11 11 O 1.45199 * 109.47078 * 53.89941 * 10 9 7 12 12 C 1.34234 * 116.99979 * 183.68628 * 11 10 9 13 13 O 1.20825 * 120.00102 * 1.44415 * 12 11 10 14 14 C 1.50700 * 119.99939 * 181.44591 * 12 11 10 15 15 H 1.09000 * 115.55159 * 42.90445 * 14 12 11 16 16 C 1.52994 * 117.49742 * 188.57828 * 14 12 11 17 17 C 1.52997 * 60.03326 * 107.49731 * 16 14 12 18 18 H 1.08999 * 117.49466 * 107.50209 * 17 16 14 19 19 C 1.50694 * 117.49978 * 252.51722 * 17 16 14 20 20 O 1.20825 * 120.00140 * 104.62680 * 19 17 16 21 21 O 1.34229 * 120.00318 * 284.63208 * 19 17 16 22 22 C 1.54036 * 113.92867 * 217.36632 * 9 7 2 23 23 O 1.44173 * 85.52280 * 91.65844 * 22 9 7 24 24 C 1.44182 * 93.33876 * 24.19214 * 23 22 9 25 25 H 0.97003 * 120.00219 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46632 * 293.89980 * 10 9 7 27 27 H 1.08999 * 109.47334 * 173.90286 * 10 9 7 28 28 H 1.09008 * 117.49769 * 215.00386 * 16 14 12 29 29 H 1.08997 * 117.50197 * 359.97438 * 16 14 12 30 30 H 0.96702 * 117.00571 * 179.97438 * 21 19 17 31 31 H 1.08998 * 113.86504 * 205.80641 * 22 9 7 32 32 H 1.09000 * 113.86274 * 337.50856 * 22 9 7 33 33 H 1.08996 * 113.86615 * 221.66064 * 24 23 22 34 34 H 1.09000 * 113.86008 * 89.95337 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3883 2.1089 -1.3945 5 1 1.5049 2.6190 0.8055 6 1 3.5966 1.4113 0.5889 7 6 2.0045 -1.1940 0.0005 8 1 1.4682 -2.1271 0.0913 9 6 3.5061 -1.1972 -0.1256 10 6 4.2192 -1.0179 1.2161 11 8 3.7408 -2.0162 2.1557 12 6 4.2137 -1.9485 3.4101 13 8 4.9811 -1.0682 3.7198 14 6 3.7874 -2.9706 4.4322 15 1 3.7601 -4.0025 4.0821 16 6 4.1965 -2.7285 5.8864 17 6 2.7379 -2.5454 5.4622 18 1 2.0203 -3.2975 5.7899 19 6 2.2098 -1.1366 5.3766 20 8 2.0504 -0.6157 4.2981 21 8 1.9166 -0.4603 6.4984 22 6 4.0594 -2.3578 -0.9738 23 8 3.9604 -1.4440 -2.0845 24 6 4.0386 -0.2775 -1.2408 25 1 -0.4850 0.8401 -0.0004 26 1 4.0120 -0.0218 1.6073 27 1 5.2935 -1.1367 1.0754 28 1 4.4384 -3.6012 6.4931 29 1 4.7743 -1.8302 6.1039 30 1 1.5811 0.4405 6.3931 31 1 5.0825 -2.6383 -0.7235 32 1 3.3864 -3.2123 -1.0444 33 1 3.3490 0.5180 -1.5231 34 1 5.0553 0.0772 -1.0719 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:21 Heat of formation + Delta-G solvation = -140.311304 kcal Electronic energy + Delta-G solvation = -21601.185563 eV Core-core repulsion = 18081.701199 eV Total energy + Delta-G solvation = -3519.484364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75187 -39.83135 -39.23727 -36.94122 -35.91593 -35.46749 -32.74888 -30.61841 -26.53972 -25.90803 -25.36478 -24.54170 -23.51442 -21.24844 -19.80284 -19.03876 -18.16932 -17.47689 -16.80809 -16.36547 -16.08784 -15.93526 -15.45104 -15.19822 -14.61577 -14.57042 -14.30510 -13.69585 -13.16208 -12.86777 -12.67592 -12.41338 -12.07711 -11.90439 -11.48353 -11.05777 -10.97550 -10.90089 -10.43925 -10.43767 -10.34189 -10.29493 -10.12536 -9.79453 -9.44798 -9.14477 -8.66744 -8.51247 -6.12349 -4.10475 2.24596 2.37813 2.85605 3.17900 3.19385 3.27892 3.33990 3.56350 4.33539 4.40078 4.44824 4.60021 4.80433 5.10085 5.21906 5.24349 5.42042 5.51432 5.62678 5.77105 5.80042 5.88825 6.01685 6.06490 6.26321 6.37860 6.57140 6.67348 6.97189 7.02356 7.15027 7.61265 7.97122 8.28860 8.45814 8.92003 9.48003 11.00616 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.007485 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.247375 B = 3739.876770 C = 4474.351492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.481 4.481 8 H 0.085 0.915 9 C -0.004 4.004 10 C 0.073 3.927 11 O -0.311 6.311 12 C 0.489 3.511 13 O -0.525 6.525 14 C -0.133 4.133 15 H 0.151 0.849 16 C -0.124 4.124 17 C -0.131 4.131 18 H 0.155 0.845 19 C 0.491 3.509 20 O -0.472 6.472 21 O -0.516 6.516 22 C 0.041 3.959 23 O -0.370 6.370 24 C 0.024 3.976 25 H 0.265 0.735 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.412 0.588 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -5.148 12.283 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.103 0.897 9 C -0.005 4.005 10 C -0.001 4.001 11 O -0.224 6.224 12 C 0.333 3.667 13 O -0.416 6.416 14 C -0.152 4.152 15 H 0.169 0.831 16 C -0.160 4.160 17 C -0.150 4.150 18 H 0.173 0.827 19 C 0.330 3.670 20 O -0.356 6.356 21 O -0.329 6.329 22 C -0.036 4.036 23 O -0.289 6.289 24 C -0.053 4.053 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.271 0.729 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.478 -5.043 11.754 14.815 hybrid contribution 0.122 1.737 0.122 1.746 sum 7.600 -3.306 11.876 14.482 Atomic orbital electron populations 1.69849 1.06090 1.26948 1.49458 1.24901 0.94725 0.98610 0.94064 0.87236 0.80816 0.84522 0.77440 1.20414 1.21787 1.18405 1.20261 0.85959 0.95224 1.50331 0.89654 1.21642 0.98641 0.92223 0.88032 1.23843 0.95720 0.90797 0.89782 1.86518 1.63886 1.53181 1.18858 1.22161 0.77525 0.83569 0.83489 1.90596 1.34824 1.35395 1.80762 1.21923 1.03111 1.00461 0.89690 0.83136 1.23218 0.93586 1.05413 0.93828 1.21705 0.95064 0.93169 1.05096 0.82714 1.22245 0.75240 0.87660 0.81844 1.90974 1.46930 1.68458 1.29224 1.84438 1.78177 1.33008 1.37244 1.23984 0.98352 0.95289 0.86000 1.89561 1.94560 1.16849 1.27916 1.24251 0.98709 0.91283 0.91052 0.92489 0.91243 0.93639 0.85875 0.86708 0.72903 0.92385 0.89387 0.89849 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.08 2.35 5.43 -17.82 -0.10 2.25 16 3 Si 0.87 22.19 23.67 -169.99 -4.02 18.16 16 4 H -0.28 -6.78 6.79 56.52 0.38 -6.40 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.26 -6.22 4.86 56.52 0.27 -5.95 16 7 C -0.48 -13.69 8.62 -34.44 -0.30 -13.98 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.00 -0.10 0.51 -154.58 -0.08 -0.18 16 10 C 0.07 1.65 4.60 37.16 0.17 1.82 16 11 O -0.31 -6.86 9.83 -39.27 -0.39 -7.24 16 12 C 0.49 9.41 5.47 36.01 0.20 9.61 16 13 O -0.52 -11.08 15.99 -18.75 -0.30 -11.38 16 14 C -0.13 -1.76 6.30 -91.74 -0.58 -2.34 16 15 H 0.15 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.12 -1.23 9.74 -26.74 -0.26 -1.49 16 17 C -0.13 -1.57 6.27 -91.74 -0.58 -2.15 16 18 H 0.16 1.30 8.14 -51.93 -0.42 0.88 16 19 C 0.49 7.72 7.66 36.00 0.28 7.99 16 20 O -0.47 -10.15 15.94 -18.75 -0.30 -10.45 16 21 O -0.52 -6.26 13.42 -39.26 -0.53 -6.79 16 22 C 0.04 0.86 8.35 37.61 0.31 1.17 16 23 O -0.37 -8.67 12.40 -35.23 -0.44 -9.11 16 24 C 0.02 0.54 6.52 37.61 0.25 0.79 16 25 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.07 1.73 5.62 -51.93 -0.29 1.43 16 27 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 28 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.11 1.32 7.70 -51.93 -0.40 0.92 16 30 H 0.41 3.61 9.10 45.56 0.41 4.02 16 31 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 32 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 33 H 0.08 2.02 3.83 -51.93 -0.20 1.82 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -37.09 292.77 -4.59 -41.69 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.12 Total: 3.93 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.68 Total: 3.50 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.95 Total: -44.97 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.02 Total: 18.16 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -37.09 -4.59 -41.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.625 kcal (2) G-P(sol) polarization free energy of solvation -37.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds