Wall clock time and date at job start Mon Mar 30 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48502 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47224 * 299.99922 * 3 2 1 6 6 H 1.48496 * 109.47570 * 59.99771 * 3 2 1 7 7 C 1.39580 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00057 * 163.08205 * 7 2 1 9 9 N 1.36122 * 120.00569 * 343.08129 * 7 2 1 10 10 C 1.46497 * 119.99343 * 318.53229 * 9 7 2 11 11 C 1.53006 * 109.47067 * 262.59007 * 10 9 7 12 12 C 1.50701 * 109.47273 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00058 * 359.97438 * 12 11 10 14 14 O 1.34226 * 120.00166 * 179.97438 * 12 11 10 15 15 C 1.34769 * 120.00431 * 138.52557 * 9 7 2 16 16 O 1.21505 * 120.00008 * 174.92808 * 15 9 7 17 17 C 1.48830 * 119.99993 * 355.20300 * 15 9 7 18 18 O 1.21447 * 120.00178 * 354.24309 * 17 15 9 19 19 N 1.34777 * 120.00320 * 174.24574 * 17 15 9 20 20 C 1.46497 * 120.00153 * 179.97438 * 19 17 15 21 21 C 1.53005 * 117.50072 * 223.74360 * 20 19 17 22 22 C 1.53002 * 117.49544 * 155.08476 * 20 19 17 23 23 H 0.97001 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47631 * 22.59252 * 10 9 7 25 25 H 1.09005 * 109.47158 * 142.59067 * 10 9 7 26 26 H 1.09004 * 109.47050 * 300.00220 * 11 10 9 27 27 H 1.08999 * 109.46662 * 60.00136 * 11 10 9 28 28 H 0.96693 * 117.00499 * 179.97438 * 14 12 11 29 29 H 0.97004 * 119.99965 * 359.97438 * 19 17 15 30 30 H 1.08995 * 115.55364 * 9.41785 * 20 19 17 31 31 H 1.09003 * 117.49492 * 0.02562 * 21 20 19 32 32 H 1.08994 * 117.49597 * 145.02276 * 21 20 19 33 33 H 1.08999 * 117.50038 * 214.97793 * 22 20 19 34 34 H 1.08999 * 117.50572 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3965 1.2124 7 6 2.0080 -1.2088 -0.0005 8 1 3.0530 -1.2289 -0.2727 9 7 1.3717 -2.3624 0.3420 10 6 0.4356 -2.3756 1.4687 11 6 1.1507 -2.8895 2.7200 12 6 0.1875 -2.9037 3.8789 13 8 -0.9537 -2.5397 3.7206 14 8 0.5973 -3.3207 5.0871 15 6 1.6029 -3.4922 -0.3554 16 8 1.1072 -4.5411 0.0057 17 6 2.4701 -3.4561 -1.5644 18 8 2.8843 -2.3941 -1.9832 19 7 2.7958 -4.6021 -2.1946 20 6 3.6490 -4.5666 -3.3849 21 6 3.2435 -5.4435 -4.5713 22 6 4.4536 -5.8254 -3.7152 23 1 -0.4850 0.8400 -0.0004 24 1 0.0694 -1.3649 1.6488 25 1 -0.4043 -3.0301 1.2356 26 1 1.5168 -3.9003 2.5399 27 1 1.9905 -2.2349 2.9530 28 1 -0.0562 -3.3116 5.7997 29 1 2.4653 -5.4505 -1.8599 30 1 4.1088 -3.6032 -3.6052 31 1 2.3415 -6.0466 -4.4663 32 1 3.4368 -5.0571 -5.5720 33 1 5.4425 -5.6901 -4.1531 34 1 4.3485 -6.6798 -3.0466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183181.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:15 Heat of formation + Delta-G solvation = -123.492574 kcal Electronic energy + Delta-G solvation = -20866.068593 eV Core-core repulsion = 17379.606295 eV Total energy + Delta-G solvation = -3486.462298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95989 -39.54982 -37.91159 -36.44276 -35.84780 -35.18186 -32.19679 -31.97208 -30.63282 -25.37811 -25.21664 -23.04527 -22.34016 -21.06848 -20.39687 -19.36537 -18.26435 -17.68489 -16.39553 -16.16131 -15.91440 -15.62051 -15.22018 -14.64297 -14.47324 -14.22414 -13.82023 -13.19862 -13.15586 -12.71421 -12.50096 -12.40918 -11.76531 -11.54640 -11.41461 -11.20875 -11.14601 -11.09724 -10.89475 -10.44108 -10.40470 -10.30262 -10.17457 -9.91602 -9.21839 -8.36034 -8.31397 -7.66875 -6.46937 -4.11652 2.49855 2.61826 3.15079 3.18225 3.24416 3.30763 3.51547 3.92202 4.12116 4.39381 4.79236 4.90601 4.96719 5.07422 5.11192 5.51236 5.63812 5.68385 5.76208 5.86834 6.00431 6.10430 6.14751 6.23436 6.67657 6.78634 6.92021 7.16318 7.46848 7.66791 7.89408 8.25189 8.27236 8.75668 8.96744 9.25924 9.65132 10.55824 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.006687 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.007307 B = 4185.993538 C = 5687.946275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.047 3.953 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.328 4.328 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.130 3.870 11 C -0.127 4.127 12 C 0.484 3.516 13 O -0.514 6.514 14 O -0.523 6.523 15 C 0.437 3.563 16 O -0.601 6.601 17 C 0.513 3.487 18 O -0.495 6.495 19 N -0.696 5.696 20 C 0.089 3.911 21 C -0.198 4.198 22 C -0.193 4.193 23 H 0.274 0.726 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.402 0.598 29 H 0.406 0.594 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -6.459 0.675 8.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.162 4.162 3 Si 0.748 3.252 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.456 4.456 8 H 0.128 0.872 9 N -0.102 5.102 10 C 0.006 3.994 11 C -0.166 4.166 12 C 0.327 3.673 13 O -0.401 6.401 14 O -0.335 6.335 15 C 0.223 3.777 16 O -0.489 6.489 17 C 0.296 3.704 18 O -0.366 6.366 19 N -0.350 5.350 20 C -0.018 4.018 21 C -0.237 4.237 22 C -0.232 4.232 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.260 0.740 29 H 0.242 0.758 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.429 -5.879 0.213 8.005 hybrid contribution -0.300 0.383 0.458 0.668 sum 5.129 -5.496 0.671 7.547 Atomic orbital electron populations 1.69758 1.06573 1.28466 1.43746 1.25613 0.95119 1.00430 0.94988 0.85936 0.80293 0.81072 0.77877 1.18791 1.20491 1.20528 1.19897 0.95743 0.83115 1.46887 0.87235 1.43134 1.36328 1.08071 1.22617 1.21262 0.90926 1.04562 0.82616 1.21826 0.98346 1.05351 0.91084 1.23680 0.88233 0.72277 0.83137 1.90715 1.21039 1.44221 1.84171 1.84580 1.48212 1.79855 1.20870 1.19811 0.86988 0.85867 0.85025 1.90608 1.56591 1.30918 1.70789 1.20305 0.81244 0.83460 0.85347 1.90751 1.50854 1.28988 1.66036 1.45234 1.51467 1.10048 1.28237 1.21516 0.96587 0.96744 0.86934 1.23423 0.99044 1.04701 0.96549 1.23361 0.96459 0.99590 1.03764 0.91571 0.86762 0.91272 0.87818 0.87563 0.74024 0.75844 0.84580 0.88583 0.88289 0.88185 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.69 11.57 55.53 0.64 -22.05 16 2 C 0.05 1.20 4.96 -17.40 -0.09 1.11 16 3 Si 0.92 19.98 29.59 -169.99 -5.03 14.95 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.33 -8.45 7.52 -15.15 -0.11 -8.57 16 8 H 0.11 2.87 6.45 -52.48 -0.34 2.54 16 9 N -0.39 -9.59 2.49 -115.58 -0.29 -9.88 16 10 C 0.13 3.03 4.07 -4.04 -0.02 3.01 16 11 C -0.13 -2.41 6.05 -27.88 -0.17 -2.58 16 12 C 0.48 8.56 8.33 36.01 0.30 8.86 16 13 O -0.51 -10.63 16.74 -18.75 -0.31 -10.95 16 14 O -0.52 -7.15 13.42 -39.25 -0.53 -7.67 16 15 C 0.44 10.58 7.60 -11.88 -0.09 10.49 16 16 O -0.60 -14.69 15.92 5.36 0.09 -14.61 16 17 C 0.51 11.44 7.74 -11.88 -0.09 11.34 16 18 O -0.49 -12.15 13.23 5.41 0.07 -12.08 16 19 N -0.70 -12.29 5.56 -54.43 -0.30 -12.60 16 20 C 0.09 1.30 6.43 -67.93 -0.44 0.86 16 21 C -0.20 -2.32 10.46 -26.69 -0.28 -2.60 16 22 C -0.19 -2.13 10.46 -26.69 -0.28 -2.41 16 23 H 0.27 6.87 8.30 -40.82 -0.34 6.53 16 24 H 0.11 2.88 5.73 -51.93 -0.30 2.59 16 25 H 0.07 1.71 7.69 -51.93 -0.40 1.31 16 26 H 0.10 1.93 7.84 -51.93 -0.41 1.52 16 27 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 28 H 0.40 3.55 9.10 45.56 0.41 3.96 16 29 H 0.41 6.63 8.30 -40.82 -0.34 6.29 16 30 H 0.14 2.13 7.40 -51.93 -0.38 1.74 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -31.56 304.98 -5.33 -36.89 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -3.00 Total: 13.87 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: -1.26 Total: 19.52 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.05 Total: -44.52 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.68 Total: -45.31 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.56 -5.33 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183181.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.603 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds