Wall clock time and date at job start Mon Mar 30 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48502 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47224 * 299.99922 * 3 2 1 6 6 H 1.48496 * 109.47570 * 59.99771 * 3 2 1 7 7 C 1.39580 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00057 * 163.08205 * 7 2 1 9 9 N 1.36122 * 120.00569 * 343.08129 * 7 2 1 10 10 C 1.46497 * 119.99343 * 318.53229 * 9 7 2 11 11 C 1.53006 * 109.47067 * 262.59007 * 10 9 7 12 12 C 1.50701 * 109.47273 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00058 * 359.97438 * 12 11 10 14 14 O 1.34226 * 120.00166 * 179.97438 * 12 11 10 15 15 C 1.34769 * 120.00431 * 138.52557 * 9 7 2 16 16 O 1.21505 * 120.00008 * 174.92808 * 15 9 7 17 17 C 1.48830 * 119.99993 * 355.20300 * 15 9 7 18 18 O 1.21447 * 120.00178 * 354.24309 * 17 15 9 19 19 N 1.34777 * 120.00320 * 174.24574 * 17 15 9 20 20 C 1.46497 * 120.00153 * 179.97438 * 19 17 15 21 21 C 1.53005 * 117.50072 * 223.74360 * 20 19 17 22 22 C 1.53002 * 117.49544 * 155.08476 * 20 19 17 23 23 H 0.97001 * 120.00170 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47631 * 22.59252 * 10 9 7 25 25 H 1.09005 * 109.47158 * 142.59067 * 10 9 7 26 26 H 1.09004 * 109.47050 * 300.00220 * 11 10 9 27 27 H 1.08999 * 109.46662 * 60.00136 * 11 10 9 28 28 H 0.96693 * 117.00499 * 179.97438 * 14 12 11 29 29 H 0.97004 * 119.99965 * 359.97438 * 19 17 15 30 30 H 1.08995 * 115.55364 * 9.41785 * 20 19 17 31 31 H 1.09003 * 117.49492 * 0.02562 * 21 20 19 32 32 H 1.08994 * 117.49597 * 145.02276 * 21 20 19 33 33 H 1.08999 * 117.50038 * 214.97793 * 22 20 19 34 34 H 1.08999 * 117.50572 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3965 1.2124 7 6 2.0080 -1.2088 -0.0005 8 1 3.0530 -1.2289 -0.2727 9 7 1.3717 -2.3624 0.3420 10 6 0.4356 -2.3756 1.4687 11 6 1.1507 -2.8895 2.7200 12 6 0.1875 -2.9037 3.8789 13 8 -0.9537 -2.5397 3.7206 14 8 0.5973 -3.3207 5.0871 15 6 1.6029 -3.4922 -0.3554 16 8 1.1072 -4.5411 0.0057 17 6 2.4701 -3.4561 -1.5644 18 8 2.8843 -2.3941 -1.9832 19 7 2.7958 -4.6021 -2.1946 20 6 3.6490 -4.5666 -3.3849 21 6 3.2435 -5.4435 -4.5713 22 6 4.4536 -5.8254 -3.7152 23 1 -0.4850 0.8400 -0.0004 24 1 0.0694 -1.3649 1.6488 25 1 -0.4043 -3.0301 1.2356 26 1 1.5168 -3.9003 2.5399 27 1 1.9905 -2.2349 2.9530 28 1 -0.0562 -3.3116 5.7997 29 1 2.4653 -5.4505 -1.8599 30 1 4.1088 -3.6032 -3.6052 31 1 2.3415 -6.0466 -4.4663 32 1 3.4368 -5.0571 -5.5720 33 1 5.4425 -5.6901 -4.1531 34 1 4.3485 -6.6798 -3.0466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183181.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:15 Heat of formation + Delta-G solvation = -147.157011 kcal Electronic energy + Delta-G solvation = -20867.094760 eV Core-core repulsion = 17379.606295 eV Total energy + Delta-G solvation = -3487.488465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57259 -41.10547 -39.49529 -37.87966 -37.29074 -36.92497 -34.01301 -33.50247 -32.38799 -27.15342 -27.06656 -24.61613 -23.24135 -22.41606 -21.87820 -21.16871 -20.00490 -19.07576 -17.94041 -17.77484 -17.59749 -17.09585 -16.83791 -16.31706 -16.21821 -15.65201 -15.31347 -14.85455 -14.80631 -14.35248 -14.01164 -13.64963 -13.57831 -13.22561 -12.88321 -12.86125 -12.54929 -12.42628 -12.29615 -12.14467 -12.07503 -11.77914 -11.65918 -11.43719 -11.10923 -10.18374 -9.74544 -9.56014 -8.39857 -6.11396 0.69775 1.19716 1.44884 1.45396 1.58352 1.70552 2.14451 2.33580 2.44406 2.99293 3.09328 3.19409 3.81774 3.92487 3.97075 4.10501 4.11803 4.15744 4.48799 4.68911 4.78386 4.82719 4.87495 5.04385 5.24511 5.25680 5.45335 5.56865 5.59798 5.77243 6.24009 6.42444 6.96048 7.01113 7.10096 7.39448 7.72256 8.63456 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.006687 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.007307 B = 4185.993538 C = 5687.946275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.103 0.897 9 N -0.397 5.397 10 C 0.135 3.865 11 C -0.119 4.119 12 C 0.498 3.502 13 O -0.549 6.549 14 O -0.506 6.506 15 C 0.427 3.573 16 O -0.609 6.609 17 C 0.511 3.489 18 O -0.527 6.527 19 N -0.677 5.677 20 C 0.044 3.956 21 C -0.184 4.184 22 C -0.162 4.162 23 H 0.276 0.724 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.428 0.572 29 H 0.413 0.587 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 -7.360 0.668 10.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.199 4.199 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.120 0.880 9 N -0.113 5.113 10 C 0.012 3.988 11 C -0.157 4.157 12 C 0.341 3.659 13 O -0.440 6.440 14 O -0.319 6.319 15 C 0.213 3.787 16 O -0.498 6.498 17 C 0.293 3.707 18 O -0.401 6.401 19 N -0.330 5.330 20 C -0.062 4.062 21 C -0.222 4.222 22 C -0.200 4.200 23 H 0.086 0.914 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.290 0.710 29 H 0.250 0.750 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.971 -6.843 0.227 9.771 hybrid contribution -0.768 0.495 0.438 1.013 sum 6.203 -6.348 0.665 8.900 Atomic orbital electron populations 1.69855 1.07935 1.29317 1.44975 1.26415 0.95771 1.03322 0.94376 0.84999 0.79225 0.77023 0.77929 1.18179 1.20828 1.19303 1.19934 0.95563 0.83695 1.47411 0.87987 1.43312 1.36467 1.08187 1.23355 1.21067 0.90652 1.02921 0.84191 1.21588 0.98471 1.05629 0.90053 1.23217 0.87067 0.71636 0.83936 1.90716 1.22316 1.46008 1.84942 1.84493 1.48731 1.78596 1.20108 1.20285 0.87157 0.85629 0.85588 1.90578 1.57003 1.31012 1.71184 1.20017 0.81180 0.84368 0.85087 1.90726 1.52411 1.30226 1.66772 1.45101 1.50647 1.08777 1.28474 1.21758 0.98885 0.98166 0.87342 1.23519 0.99686 1.02804 0.96199 1.23481 0.97178 0.96962 1.02368 0.91384 0.88855 0.93670 0.87299 0.86134 0.71042 0.75031 0.86090 0.88298 0.86556 0.85884 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.45 11.57 21.76 0.25 -48.20 16 2 C 0.01 0.32 4.96 85.14 0.42 0.74 16 3 Si 0.99 41.24 29.59 68.60 2.03 43.27 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.34 -17.79 7.52 84.35 0.63 -17.15 16 8 H 0.10 5.47 6.45 -2.91 -0.02 5.46 16 9 N -0.40 -20.27 2.49 -637.88 -1.59 -21.86 16 10 C 0.14 6.49 4.07 86.38 0.35 6.84 16 11 C -0.12 -4.49 6.05 29.85 0.18 -4.31 16 12 C 0.50 17.17 8.33 71.24 0.59 17.77 16 13 O -0.55 -22.77 16.74 21.95 0.37 -22.40 16 14 O -0.51 -12.56 13.42 -51.37 -0.69 -13.25 16 15 C 0.43 21.10 7.60 87.08 0.66 21.76 16 16 O -0.61 -30.12 15.92 -3.73 -0.06 -30.18 16 17 C 0.51 23.12 7.74 87.08 0.67 23.79 16 18 O -0.53 -26.48 13.23 -3.55 -0.05 -26.53 16 19 N -0.68 -23.58 5.56 -444.45 -2.47 -26.05 16 20 C 0.04 1.22 6.43 44.99 0.29 1.51 16 21 C -0.18 -3.79 10.46 30.62 0.32 -3.47 16 22 C -0.16 -3.03 10.46 30.62 0.32 -2.71 16 23 H 0.28 14.18 8.30 -92.71 -0.77 13.42 16 24 H 0.09 4.89 5.73 -2.39 -0.01 4.88 16 25 H 0.04 2.33 7.69 -2.38 -0.02 2.31 16 26 H 0.11 4.00 7.84 -2.38 -0.02 3.98 16 27 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 28 H 0.43 6.29 9.10 -74.06 -0.67 5.62 16 29 H 0.41 13.10 8.30 -92.71 -0.77 12.33 16 30 H 0.12 3.77 7.40 -2.39 -0.02 3.75 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.76 304.98 1.97 -67.79 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.28 Total: 32.65 kcal Atomic # 6 Polarization: 40.32 SS G_CDS: 4.45 Total: 44.77 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -3.81 Total: -96.11 kcal Atomic # 8 Polarization: -91.94 SS G_CDS: -0.43 Total: -92.36 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -69.76 1.97 -67.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183181.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.364 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds