Wall clock time and date at job start Mon Mar 30 2020 01:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99482 * 2 1 4 4 H 1.48493 * 109.47419 * 275.70751 * 3 2 1 5 5 H 1.48502 * 109.47078 * 35.70732 * 3 2 1 6 6 H 1.48501 * 109.46908 * 155.70429 * 3 2 1 7 7 C 1.38948 * 120.00434 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00107 * 337.63814 * 7 2 1 9 9 N 1.37095 * 119.99972 * 157.64762 * 7 2 1 10 10 C 1.46500 * 119.99944 * 322.24004 * 9 7 2 11 11 C 1.53001 * 109.47493 * 263.62793 * 10 9 7 12 12 C 1.50697 * 109.47088 * 179.97438 * 11 10 9 13 13 O 1.20831 * 120.00485 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00045 * 179.97438 * 12 11 10 15 15 C 1.34770 * 120.00364 * 142.24716 * 9 7 2 16 16 O 1.21297 * 120.00581 * 179.97438 * 15 9 7 17 17 C 1.50699 * 120.00018 * 0.27132 * 15 9 7 18 18 C 1.53001 * 109.47702 * 179.72402 * 17 15 9 19 19 H 1.09003 * 112.91332 * 43.51164 * 18 17 15 20 20 C 1.53725 * 113.71277 * 174.99699 * 18 17 15 21 21 C 1.51517 * 86.60615 * 114.39970 * 20 18 17 22 22 O 1.21279 * 134.17442 * 180.02562 * 21 20 18 23 23 N 1.35837 * 91.64909 * 0.02562 * 21 20 18 24 24 H 0.96992 * 120.00820 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47069 * 23.62746 * 10 9 7 26 26 H 1.09001 * 109.47434 * 143.62778 * 10 9 7 27 27 H 1.08995 * 109.47280 * 300.00117 * 11 10 9 28 28 H 1.09001 * 109.46938 * 60.00126 * 11 10 9 29 29 H 0.96701 * 117.00258 * 180.02562 * 14 12 11 30 30 H 1.08998 * 109.47219 * 299.72626 * 17 15 9 31 31 H 1.09006 * 109.47250 * 59.72573 * 17 15 9 32 32 H 1.08992 * 113.69559 * 228.83119 * 20 18 17 33 33 H 1.09002 * 113.68864 * 359.88072 * 20 18 17 34 34 H 0.97001 * 132.37794 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.3749 2.1162 -1.3930 5 1 1.5108 2.6149 0.8172 6 1 3.6006 1.4086 0.5761 7 6 2.0089 -1.2033 -0.0005 8 1 1.5300 -2.1035 0.3549 9 7 3.3026 -1.2476 -0.4521 10 6 3.7053 -0.4344 -1.6022 11 6 3.6499 -1.2850 -2.8728 12 6 4.0635 -0.4483 -4.0559 13 8 4.3714 0.7095 -3.8990 14 8 4.0907 -0.9895 -5.2840 15 6 4.2040 -2.0393 0.1619 16 8 5.3485 -2.0788 -0.2378 17 6 3.7884 -2.8805 1.3412 18 6 4.9897 -3.6841 1.8432 19 1 5.9052 -3.0942 1.8903 20 6 4.7053 -4.4868 3.1230 21 6 4.9085 -5.7298 2.2808 22 8 4.8672 -6.9205 2.5077 23 7 5.1552 -4.9856 1.1716 24 1 -0.4851 0.8399 0.0004 25 1 3.0276 0.4135 -1.7028 26 1 4.7220 -0.0711 -1.4523 27 1 4.3275 -2.1328 -2.7723 28 1 2.6332 -1.6483 -3.0228 29 1 4.3629 -0.4136 -6.0116 30 1 3.4251 -2.2332 2.1393 31 1 2.9951 -3.5641 1.0383 32 1 5.4592 -4.3555 3.8991 33 1 3.6877 -4.3702 3.4960 34 1 5.3661 -5.2267 0.2560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:02 Heat of formation + Delta-G solvation = -132.264988 kcal Electronic energy + Delta-G solvation = -20843.010039 eV Core-core repulsion = 17356.167340 eV Total energy + Delta-G solvation = -3486.842698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47773 -40.05498 -38.82010 -36.49942 -35.99970 -35.17810 -32.45197 -31.35726 -29.81356 -27.96680 -25.17696 -24.71784 -22.22989 -20.84883 -19.43913 -19.19308 -18.01079 -17.28041 -17.03049 -16.46677 -16.27313 -16.17660 -15.60868 -15.46008 -14.83181 -14.41638 -13.95136 -13.29732 -13.23929 -12.81826 -12.71567 -12.58496 -12.17401 -12.03456 -11.77888 -11.43257 -11.36466 -11.27036 -11.06203 -10.88921 -10.38286 -10.29608 -10.03864 -9.86480 -9.41369 -9.02555 -8.77830 -8.06403 -6.66492 -4.29385 2.43718 2.64922 3.00151 3.13642 3.18089 3.22732 3.48283 3.56147 3.99834 4.15639 4.22048 4.71340 4.86479 5.07736 5.26712 5.41956 5.45151 5.61071 5.68651 5.85909 5.93194 5.98925 6.08351 6.22388 6.37014 6.43372 6.59082 6.66174 7.08633 7.12152 7.86582 8.02784 8.08522 8.51204 8.74325 9.11808 9.44454 10.42955 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.006237 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.740381 B = 4488.293140 C = 5627.277766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.073 3.927 3 Si 0.867 3.133 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.358 4.358 8 H 0.108 0.892 9 N -0.460 5.460 10 C 0.114 3.886 11 C -0.123 4.123 12 C 0.484 3.516 13 O -0.520 6.520 14 O -0.520 6.520 15 C 0.480 3.520 16 O -0.598 6.598 17 C -0.126 4.126 18 C 0.152 3.848 19 H 0.108 0.892 20 C -0.180 4.180 21 C 0.527 3.473 22 O -0.524 6.524 23 N -0.735 5.735 24 H 0.278 0.722 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.404 0.596 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -1.999 -0.911 5.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.136 4.136 3 Si 0.693 3.307 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.126 0.874 9 N -0.179 5.179 10 C -0.009 4.009 11 C -0.162 4.162 12 C 0.327 3.673 13 O -0.408 6.408 14 O -0.332 6.332 15 C 0.270 3.730 16 O -0.483 6.483 17 C -0.167 4.167 18 C 0.047 3.953 19 H 0.126 0.874 20 C -0.220 4.220 21 C 0.312 3.688 22 O -0.399 6.399 23 N -0.394 5.394 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.743 -2.484 -0.614 6.287 hybrid contribution 0.335 1.371 -1.151 1.822 sum 6.078 -1.112 -1.765 6.426 Atomic orbital electron populations 1.69759 1.06354 1.28602 1.43679 1.25337 0.95027 0.98633 0.94604 0.87070 0.81247 0.83525 0.78815 1.19516 1.21133 1.18282 1.19072 0.86158 0.96867 1.46324 0.87440 1.43717 1.10054 1.39827 1.24351 1.21421 1.01600 0.93480 0.84416 1.21754 1.05043 0.99685 0.89689 1.23707 0.73006 0.86765 0.83838 1.90705 1.45336 1.18958 1.85796 1.84579 1.81498 1.48673 1.18401 1.20374 0.84471 0.83374 0.84788 1.90571 1.19500 1.70149 1.68092 1.21665 0.97393 0.98947 0.98692 1.22279 0.99460 0.85749 0.87776 0.87447 1.24040 1.05631 0.93489 0.98870 1.22113 0.74269 0.88209 0.84187 1.90728 1.53370 1.15668 1.80113 1.48855 1.71127 1.07795 1.11593 0.91184 0.90243 0.90539 0.87437 0.86871 0.73813 0.87098 0.88705 0.87045 0.86650 0.75890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.78 13.96 55.50 0.77 -21.01 16 2 C 0.07 1.78 5.26 -17.47 -0.09 1.69 16 3 Si 0.87 19.43 25.05 -169.99 -4.26 15.17 16 4 H -0.27 -6.12 6.69 56.52 0.38 -5.74 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.36 -8.25 9.06 -14.94 -0.14 -8.39 16 8 H 0.11 2.55 7.23 -52.49 -0.38 2.17 16 9 N -0.46 -9.77 2.18 -114.81 -0.25 -10.02 16 10 C 0.11 2.38 3.22 -4.04 -0.01 2.37 16 11 C -0.12 -2.16 6.09 -27.88 -0.17 -2.33 16 12 C 0.48 8.08 8.33 36.00 0.30 8.38 16 13 O -0.52 -10.18 16.74 -18.75 -0.31 -10.49 16 14 O -0.52 -6.73 13.42 -39.26 -0.53 -7.26 16 15 C 0.48 9.41 7.58 -10.99 -0.08 9.33 16 16 O -0.60 -12.59 15.44 5.54 0.09 -12.51 16 17 C -0.13 -1.97 4.37 -27.88 -0.12 -2.09 16 18 C 0.15 2.02 4.07 -67.23 -0.27 1.75 16 19 H 0.11 1.46 7.67 -51.93 -0.40 1.06 16 20 C -0.18 -1.98 7.92 -27.14 -0.21 -2.20 16 21 C 0.53 7.72 9.85 -10.27 -0.10 7.62 16 22 O -0.52 -9.56 18.03 5.56 0.10 -9.46 16 23 N -0.73 -10.21 7.24 -58.01 -0.42 -10.63 16 24 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.08 1.77 3.61 -51.93 -0.19 1.58 16 26 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 27 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.40 3.30 9.10 45.56 0.41 3.71 16 30 H 0.11 1.62 8.10 -51.93 -0.42 1.20 16 31 H 0.09 1.48 7.66 -51.93 -0.40 1.08 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.12 1.12 8.01 -51.93 -0.42 0.71 16 34 H 0.40 5.43 8.96 -40.82 -0.37 5.07 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -30.84 299.34 -4.17 -35.01 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -2.97 Total: 10.55 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -0.90 Total: 16.13 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.10 Total: -41.66 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.66 Total: -39.72 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.26 Total: 15.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.84 -4.17 -35.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.255 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds